Wall clock time and date at job start Tue Mar 31 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 H 1.09003 * 109.47633 * 55.04593 * 3 2 1 5 5 C 1.50705 * 109.47287 * 175.04834 * 3 2 1 6 6 H 1.07999 * 119.99511 * 119.72056 * 5 3 2 7 7 C 1.37871 * 119.99769 * 299.99996 * 5 3 2 8 8 N 1.31511 * 120.00312 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99646 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47434 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47331 * 119.99910 * 9 7 5 12 12 H 1.48498 * 109.47106 * 239.99801 * 9 7 5 13 13 N 1.46901 * 109.46909 * 295.04614 * 3 2 1 14 14 C 1.46906 * 111.00201 * 137.73516 * 13 3 2 15 15 C 1.53005 * 109.46693 * 297.04906 * 14 13 3 16 16 C 1.53002 * 109.46725 * 57.04525 * 14 13 3 17 17 C 1.50693 * 109.47233 * 177.04515 * 14 13 3 18 18 C 1.38238 * 119.99039 * 359.73123 * 17 14 13 19 19 C 1.38215 * 120.01526 * 179.72561 * 18 17 14 20 20 C 1.38350 * 119.98299 * 0.54179 * 19 18 17 21 21 Cl 1.73602 * 120.01054 * 179.70546 * 20 19 18 22 22 C 1.38353 * 119.97674 * 359.73049 * 20 19 18 23 23 C 1.38206 * 119.98452 * 359.97438 * 22 20 19 24 24 H 1.08996 * 109.46954 * 65.11157 * 1 2 3 25 25 H 1.09002 * 109.47101 * 185.11397 * 1 2 3 26 26 H 1.09005 * 109.47213 * 305.11405 * 1 2 3 27 27 H 1.09000 * 109.47294 * 239.99713 * 2 1 3 28 28 H 1.09002 * 109.47101 * 119.99636 * 2 1 3 29 29 H 0.96997 * 119.99901 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00326 * 261.69156 * 13 3 2 31 31 H 1.09000 * 109.47224 * 66.19488 * 15 14 13 32 32 H 1.08999 * 109.46622 * 186.19527 * 15 14 13 33 33 H 1.09000 * 109.47141 * 306.18926 * 15 14 13 34 34 H 1.08998 * 109.47171 * 54.64859 * 16 14 13 35 35 H 1.08999 * 109.46919 * 174.64884 * 16 14 13 36 36 H 1.08999 * 109.47172 * 294.64653 * 16 14 13 37 37 H 1.08008 * 119.98993 * 359.97438 * 18 17 14 38 38 H 1.08002 * 120.00548 * 180.27140 * 19 18 17 39 39 H 1.07998 * 120.00706 * 179.97438 * 22 20 19 40 40 H 1.08005 * 119.99506 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9814 0.8423 5 6 3.5420 1.4444 0.1226 6 1 4.1468 1.8852 -0.6560 7 6 4.1442 0.8782 1.2261 8 7 3.4079 0.3370 2.1719 9 14 6.0060 0.8798 1.3777 10 1 6.5989 1.5442 0.1895 11 1 6.4021 1.6152 2.6056 12 1 6.4973 -0.5192 1.4585 13 7 1.6504 2.0996 -1.2548 14 6 1.1769 3.4681 -1.0075 15 6 -0.0809 3.4231 -0.1375 16 6 2.2676 4.2626 -0.2865 17 6 0.8558 4.1335 -2.3209 18 6 1.0329 3.4445 -3.5062 19 6 0.7332 4.0523 -4.7107 20 6 0.2664 5.3546 -4.7308 21 17 -0.1030 6.1213 -6.2438 22 6 0.0946 6.0456 -3.5446 23 6 0.3889 5.4346 -2.3404 24 1 -0.3633 0.4325 -0.9322 25 1 -0.3633 -1.0236 0.0916 26 1 -0.3634 0.5911 0.8407 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8316 -0.0610 2.9484 30 1 2.4115 2.0945 -1.9172 31 1 0.1748 3.0431 0.8516 32 1 -0.4949 4.4272 -0.0452 33 1 -0.8188 2.7670 -0.5993 34 1 3.1923 4.2147 -0.8615 35 1 1.9547 5.3020 -0.1876 36 1 2.4328 3.8372 0.7034 37 1 1.4019 2.4295 -3.4906 38 1 0.8675 3.5123 -5.6364 39 1 -0.2693 7.0623 -3.5597 40 1 0.2552 5.9741 -1.4143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:11 Heat of formation + Delta-G solvation = 7.275316 kcal Electronic energy + Delta-G solvation = -20395.798476 eV Core-core repulsion = 17428.748729 eV Total energy + Delta-G solvation = -2967.049747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70428 -37.35090 -36.21924 -33.84607 -31.62437 -31.04471 -29.82925 -28.77099 -26.64469 -26.09267 -23.25347 -22.53824 -22.24644 -19.82708 -18.55442 -17.34061 -16.52629 -15.51428 -15.04334 -14.73762 -14.23218 -13.85856 -13.70136 -13.40490 -13.31337 -12.80733 -12.67404 -12.34792 -12.04673 -11.75378 -11.59947 -11.38275 -11.29973 -11.18044 -11.11587 -10.84229 -10.74006 -10.68032 -10.55339 -10.27014 -10.04508 -9.60088 -9.48893 -8.93778 -8.89165 -8.41668 -8.35336 -7.32370 -6.03885 -4.14001 1.30716 1.44588 2.18051 3.23714 3.33069 3.35760 3.79754 4.36780 4.85101 4.98067 5.01385 5.17047 5.27112 5.51384 5.56162 5.68605 5.77045 5.89499 6.09480 6.13915 6.24528 6.28257 6.36586 6.38117 6.46734 6.51388 6.57797 6.69085 6.74644 6.84734 6.94826 7.01878 7.13931 7.17772 7.47649 7.57428 7.75646 8.06183 8.10910 8.31818 8.62335 8.98310 9.52755 10.97758 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.004353 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.005946 B = 6431.219903 C = 6813.490231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.151 3.849 15 C -0.131 4.131 16 C -0.163 4.163 17 C -0.049 4.049 18 C -0.092 4.092 19 C -0.113 4.113 20 C -0.046 4.046 21 Cl -0.088 7.088 22 C -0.115 4.115 23 C -0.107 4.107 24 H 0.046 0.954 25 H 0.023 0.977 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 8.717 -9.308 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.574 4.574 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.310 5.310 14 C 0.059 3.941 15 C -0.188 4.188 16 C -0.222 4.222 17 C -0.050 4.050 18 C -0.110 4.110 19 C -0.132 4.132 20 C -0.072 4.072 21 Cl -0.059 7.059 22 C -0.133 4.133 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.350 8.404 -9.261 14.505 hybrid contribution 1.938 0.496 0.196 2.010 sum -5.413 8.899 -9.065 13.808 Atomic orbital electron populations 1.21729 0.99224 0.98252 1.00160 1.21509 0.91888 0.99463 1.01538 1.19217 0.93086 0.91049 0.86000 0.94509 1.21815 0.92323 1.37972 1.05312 0.92777 1.24894 0.97719 0.95058 0.95839 1.69882 1.34641 1.38340 1.09432 0.86639 0.86301 0.77727 0.77920 1.19944 1.21137 1.21038 1.61127 1.41172 1.13312 1.15395 1.19688 0.94917 0.89743 0.89783 1.21909 0.96489 1.00449 0.99992 1.22506 0.98486 0.98457 1.02778 1.20214 0.95706 0.93351 0.95693 1.21211 0.98372 1.00917 0.90529 1.21072 0.99895 0.93069 0.99145 1.20868 1.05471 0.94496 0.86408 1.98342 1.93432 1.81687 1.32428 1.20919 1.01498 1.00047 0.90870 1.20954 0.99515 0.94855 0.97261 0.93524 0.95819 0.94542 0.95100 0.89357 0.92985 0.85169 0.91541 0.93517 0.92150 0.92855 0.94229 0.90380 0.83713 0.85405 0.85551 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.74 37.16 0.36 -2.32 16 2 C -0.11 -2.40 5.45 -26.73 -0.15 -2.54 16 3 C 0.21 4.81 1.16 -68.86 -0.08 4.73 16 4 H 0.04 0.91 4.99 -51.93 -0.26 0.65 16 5 C -0.54 -13.42 7.49 -34.44 -0.26 -13.67 16 6 H 0.05 1.36 7.48 -52.49 -0.39 0.97 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.68 -12.82 4.61 -95.40 -0.44 -13.26 16 14 C 0.15 2.51 0.78 -132.75 -0.10 2.40 16 15 C -0.13 -2.11 8.20 37.16 0.30 -1.80 16 16 C -0.16 -2.85 7.52 37.16 0.28 -2.57 16 17 C -0.05 -0.73 4.77 -104.62 -0.50 -1.23 16 18 C -0.09 -1.32 9.12 -39.59 -0.36 -1.68 16 19 C -0.11 -1.47 9.83 -39.55 -0.39 -1.86 16 20 C -0.05 -0.59 6.32 -39.50 -0.25 -0.84 16 21 Cl -0.09 -1.01 28.96 -51.86 -1.50 -2.51 16 22 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 23 C -0.11 -1.41 8.58 -39.59 -0.34 -1.75 16 24 H 0.05 0.87 7.89 -51.93 -0.41 0.46 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.27 5.95 -51.93 -0.31 1.97 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.33 6.31 6.64 -39.29 -0.26 6.05 16 31 H 0.07 1.19 6.42 -51.93 -0.33 0.85 16 32 H 0.05 0.64 7.19 -51.93 -0.37 0.27 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.59 7.21 -51.93 -0.37 0.21 16 36 H 0.08 1.57 6.53 -51.93 -0.34 1.23 16 37 H 0.15 2.10 6.33 -52.48 -0.33 1.77 16 38 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 1.50 7.04 -52.48 -0.37 1.13 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -25.49 328.59 -9.19 -34.68 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.85 Total: 7.23 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.96 Total: -23.25 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.19 Total: -36.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -25.49 -9.19 -34.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.957 kcal (2) G-P(sol) polarization free energy of solvation -25.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds