Wall clock time and date at job start Tue Mar 31 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 H 1.09003 * 109.47633 * 55.04593 * 3 2 1 5 5 C 1.50705 * 109.47287 * 175.04834 * 3 2 1 6 6 H 1.07999 * 119.99511 * 119.72056 * 5 3 2 7 7 C 1.37871 * 119.99769 * 299.99996 * 5 3 2 8 8 N 1.31511 * 120.00312 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99646 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47434 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47331 * 119.99910 * 9 7 5 12 12 H 1.48498 * 109.47106 * 239.99801 * 9 7 5 13 13 N 1.46901 * 109.46909 * 295.04614 * 3 2 1 14 14 C 1.46906 * 111.00201 * 137.73516 * 13 3 2 15 15 C 1.53005 * 109.46693 * 297.04906 * 14 13 3 16 16 C 1.53002 * 109.46725 * 57.04525 * 14 13 3 17 17 C 1.50693 * 109.47233 * 177.04515 * 14 13 3 18 18 C 1.38238 * 119.99039 * 359.73123 * 17 14 13 19 19 C 1.38215 * 120.01526 * 179.72561 * 18 17 14 20 20 C 1.38350 * 119.98299 * 0.54179 * 19 18 17 21 21 Cl 1.73602 * 120.01054 * 179.70546 * 20 19 18 22 22 C 1.38353 * 119.97674 * 359.73049 * 20 19 18 23 23 C 1.38206 * 119.98452 * 359.97438 * 22 20 19 24 24 H 1.08996 * 109.46954 * 65.11157 * 1 2 3 25 25 H 1.09002 * 109.47101 * 185.11397 * 1 2 3 26 26 H 1.09005 * 109.47213 * 305.11405 * 1 2 3 27 27 H 1.09000 * 109.47294 * 239.99713 * 2 1 3 28 28 H 1.09002 * 109.47101 * 119.99636 * 2 1 3 29 29 H 0.96997 * 119.99901 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00326 * 261.69156 * 13 3 2 31 31 H 1.09000 * 109.47224 * 66.19488 * 15 14 13 32 32 H 1.08999 * 109.46622 * 186.19527 * 15 14 13 33 33 H 1.09000 * 109.47141 * 306.18926 * 15 14 13 34 34 H 1.08998 * 109.47171 * 54.64859 * 16 14 13 35 35 H 1.08999 * 109.46919 * 174.64884 * 16 14 13 36 36 H 1.08999 * 109.47172 * 294.64653 * 16 14 13 37 37 H 1.08008 * 119.98993 * 359.97438 * 18 17 14 38 38 H 1.08002 * 120.00548 * 180.27140 * 19 18 17 39 39 H 1.07998 * 120.00706 * 179.97438 * 22 20 19 40 40 H 1.08005 * 119.99506 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9814 0.8423 5 6 3.5420 1.4444 0.1226 6 1 4.1468 1.8852 -0.6560 7 6 4.1442 0.8782 1.2261 8 7 3.4079 0.3370 2.1719 9 14 6.0060 0.8798 1.3777 10 1 6.5989 1.5442 0.1895 11 1 6.4021 1.6152 2.6056 12 1 6.4973 -0.5192 1.4585 13 7 1.6504 2.0996 -1.2548 14 6 1.1769 3.4681 -1.0075 15 6 -0.0809 3.4231 -0.1375 16 6 2.2676 4.2626 -0.2865 17 6 0.8558 4.1335 -2.3209 18 6 1.0329 3.4445 -3.5062 19 6 0.7332 4.0523 -4.7107 20 6 0.2664 5.3546 -4.7308 21 17 -0.1030 6.1213 -6.2438 22 6 0.0946 6.0456 -3.5446 23 6 0.3889 5.4346 -2.3404 24 1 -0.3633 0.4325 -0.9322 25 1 -0.3633 -1.0236 0.0916 26 1 -0.3634 0.5911 0.8407 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8316 -0.0610 2.9484 30 1 2.4115 2.0945 -1.9172 31 1 0.1748 3.0431 0.8516 32 1 -0.4949 4.4272 -0.0452 33 1 -0.8188 2.7670 -0.5993 34 1 3.1923 4.2147 -0.8615 35 1 1.9547 5.3020 -0.1876 36 1 2.4328 3.8372 0.7034 37 1 1.4019 2.4295 -3.4906 38 1 0.8675 3.5123 -5.6364 39 1 -0.2693 7.0623 -3.5597 40 1 0.2552 5.9741 -1.4143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:11 Heat of formation + Delta-G solvation = -4.058704 kcal Electronic energy + Delta-G solvation = -20396.289956 eV Core-core repulsion = 17428.748729 eV Total energy + Delta-G solvation = -2967.541227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86666 -38.67594 -37.28350 -35.48696 -33.45924 -32.14275 -31.18398 -30.07222 -28.16165 -27.77580 -24.86453 -23.80255 -23.40616 -21.40086 -20.01046 -18.85367 -17.98100 -16.84402 -16.59735 -16.14742 -15.50825 -15.34897 -15.04874 -14.65385 -14.43694 -14.41040 -14.01808 -13.72626 -13.57070 -13.17720 -13.05104 -13.01043 -12.85206 -12.59457 -12.48263 -12.34384 -12.28256 -12.00206 -11.95714 -11.63218 -11.55748 -11.37810 -11.23795 -10.78118 -10.37259 -9.89562 -9.44382 -8.95105 -8.01753 -6.18287 0.26296 0.43924 1.21675 1.37678 1.42358 1.50223 2.43267 2.75463 3.20868 3.59520 3.83453 3.98360 4.05659 4.28497 4.41609 4.50722 4.58920 4.68887 4.80894 4.83169 4.84653 4.91281 4.99027 5.04306 5.08112 5.12714 5.24609 5.32858 5.37538 5.40962 5.51305 5.54565 5.64102 5.67027 5.76685 5.89545 5.93865 6.17391 6.30156 6.50384 6.90339 7.11515 7.51380 8.96858 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.004353 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.005946 B = 6431.219903 C = 6813.490231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H 0.016 0.984 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.672 5.672 14 C 0.152 3.848 15 C -0.125 4.125 16 C -0.155 4.155 17 C -0.063 4.063 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.050 4.050 21 Cl -0.076 7.076 22 C -0.111 4.111 23 C -0.106 4.106 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 10.249 -10.706 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.034 0.966 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.301 5.301 14 C 0.060 3.940 15 C -0.183 4.183 16 C -0.214 4.214 17 C -0.063 4.063 18 C -0.121 4.121 19 C -0.133 4.133 20 C -0.077 4.077 21 Cl -0.047 7.047 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.031 9.945 -10.674 16.653 hybrid contribution 2.119 0.081 0.552 2.191 sum -5.913 10.026 -10.122 15.425 Atomic orbital electron populations 1.21566 0.96698 0.99204 1.00493 1.21388 0.94131 0.99120 0.99560 1.18932 0.91531 0.91036 0.86837 0.96646 1.22107 0.93831 1.37032 1.04837 0.93299 1.25526 1.01138 0.95205 0.95889 1.70002 1.35880 1.39295 1.09843 0.85781 0.82267 0.77452 0.77729 1.19602 1.21120 1.21078 1.61042 1.40591 1.15050 1.13466 1.19698 0.94690 0.88349 0.91230 1.21852 0.96148 1.01900 0.98384 1.22386 0.98367 1.00025 1.00609 1.20031 0.97502 0.94305 0.94499 1.21179 0.99075 1.00794 0.91072 1.21198 0.99485 0.93421 0.99175 1.21025 1.04928 0.94489 0.87213 1.98350 1.93281 1.81380 1.31668 1.21176 1.00538 1.00971 0.90239 1.21102 0.98891 0.94067 0.98418 0.92491 0.94418 0.94891 0.95799 0.92476 0.93192 0.85338 0.93929 0.90824 0.92351 0.94155 0.91513 0.93725 0.84552 0.84009 0.83226 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 9.74 71.98 0.70 -4.06 16 2 C -0.10 -4.79 5.45 30.60 0.17 -4.62 16 3 C 0.23 10.36 1.16 44.17 0.05 10.41 16 4 H 0.02 0.80 4.99 -2.39 -0.01 0.79 16 5 C -0.54 -27.57 7.49 25.60 0.19 -27.38 16 6 H 0.05 2.50 7.48 -2.91 -0.02 2.48 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.56 11.29 21.44 0.24 -50.32 16 9 Si 0.94 42.62 29.54 68.60 2.03 44.65 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.67 -25.45 4.61 -455.75 -2.10 -27.55 16 14 C 0.15 4.96 0.78 2.78 0.00 4.96 16 15 C -0.13 -3.92 8.20 71.98 0.59 -3.33 16 16 C -0.15 -5.36 7.52 71.98 0.54 -4.82 16 17 C -0.06 -1.75 4.77 -19.86 -0.09 -1.85 16 18 C -0.10 -2.81 9.12 22.26 0.20 -2.60 16 19 C -0.11 -2.73 9.83 22.29 0.22 -2.51 16 20 C -0.05 -1.14 6.32 22.32 0.14 -1.00 16 21 Cl -0.08 -1.54 28.96 -2.72 -0.08 -1.62 16 22 C -0.11 -2.36 9.83 22.29 0.22 -2.14 16 23 C -0.11 -2.49 8.58 22.26 0.19 -2.30 16 24 H 0.06 2.08 7.89 -2.39 -0.02 2.06 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 3.03 5.95 -2.39 -0.01 3.01 16 29 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.33 12.67 6.64 -89.70 -0.60 12.07 16 31 H 0.04 1.53 6.42 -2.39 -0.02 1.51 16 32 H 0.07 1.87 7.19 -2.39 -0.02 1.85 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.89 7.21 -2.39 -0.02 1.87 16 36 H 0.04 1.83 6.53 -2.39 -0.02 1.81 16 37 H 0.14 3.89 6.33 -2.91 -0.02 3.87 16 38 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 40 H 0.14 2.85 7.04 -2.91 -0.02 2.83 16 Total: -1.00 -54.69 328.59 4.10 -50.59 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.44 Total: 23.87 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.57 Total: -39.62 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -1.86 Total: -77.87 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -54.69 4.10 -50.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.535 kcal (2) G-P(sol) polarization free energy of solvation -54.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds