Wall clock time and date at job start Tue Mar 31 2020 05:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47456 * 2 1 4 4 H 1.09004 * 109.46768 * 54.67373 * 3 2 1 5 5 C 1.50692 * 109.47254 * 174.67090 * 3 2 1 6 6 H 1.08006 * 119.99867 * 116.87053 * 5 3 2 7 7 C 1.37878 * 120.00403 * 296.87006 * 5 3 2 8 8 N 1.31512 * 119.99588 * 351.86027 * 7 5 3 9 9 Si 1.86799 * 120.00050 * 171.85391 * 7 5 3 10 10 H 1.48501 * 109.47097 * 180.02562 * 9 7 5 11 11 H 1.48491 * 109.47333 * 300.00170 * 9 7 5 12 12 H 1.48505 * 109.46916 * 60.00611 * 9 7 5 13 13 N 1.46897 * 109.46903 * 294.67563 * 3 2 1 14 14 C 1.46896 * 111.00156 * 142.30340 * 13 3 2 15 15 C 1.53002 * 109.47408 * 294.71883 * 14 13 3 16 16 C 1.53003 * 109.47177 * 54.71871 * 14 13 3 17 17 C 1.50700 * 109.47319 * 174.71761 * 14 13 3 18 18 C 1.38260 * 119.99353 * 359.72358 * 17 14 13 19 19 C 1.38215 * 120.02570 * 179.76329 * 18 17 14 20 20 C 1.38241 * 120.01668 * 0.51368 * 19 18 17 21 21 C 1.38330 * 119.98000 * 359.74343 * 20 19 18 22 22 Cl 1.73601 * 120.00977 * 180.02562 * 21 20 19 23 23 C 1.38200 * 119.99277 * 179.97438 * 17 14 13 24 24 H 1.08993 * 109.46909 * 65.07643 * 1 2 3 25 25 H 1.09000 * 109.47145 * 185.08170 * 1 2 3 26 26 H 1.09007 * 109.46816 * 305.08071 * 1 2 3 27 27 H 1.09000 * 109.47424 * 239.99612 * 2 1 3 28 28 H 1.09003 * 109.47104 * 119.99896 * 2 1 3 29 29 H 0.96996 * 120.00358 * 356.24177 * 8 7 5 30 30 H 1.00898 * 110.99951 * 266.25801 * 13 3 2 31 31 H 1.09006 * 109.46890 * 65.28257 * 15 14 13 32 32 H 1.08997 * 109.47713 * 185.28825 * 15 14 13 33 33 H 1.09000 * 109.47051 * 305.29215 * 15 14 13 34 34 H 1.08991 * 109.47029 * 58.88725 * 16 14 13 35 35 H 1.09001 * 109.47197 * 178.89045 * 16 14 13 36 36 H 1.09003 * 109.46855 * 298.88493 * 16 14 13 37 37 H 1.08001 * 119.98676 * 0.02562 * 18 17 14 38 38 H 1.08005 * 119.99229 * 180.25536 * 19 18 17 39 39 H 1.07999 * 120.00674 * 179.76302 * 20 19 18 40 40 H 1.08000 * 120.00476 * 359.96099 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9831 0.8385 5 6 3.5412 1.4445 0.1320 6 1 4.1528 1.8419 -0.6646 7 6 4.1340 0.9390 1.2695 8 7 3.3935 0.6035 2.3033 9 14 5.9889 0.7304 1.3423 10 1 6.3728 0.1721 2.6637 11 1 6.4253 -0.1971 0.2679 12 1 6.6432 2.0501 1.1530 13 7 1.6582 2.0968 -1.2585 14 6 1.2864 3.4996 -1.0308 15 6 0.0214 3.5591 -0.1721 16 6 2.4273 4.2189 -0.3085 17 6 1.0270 4.1718 -2.3544 18 6 1.1622 3.4576 -3.5306 19 6 0.9198 4.0721 -4.7446 20 6 0.5522 5.4041 -4.7843 21 6 0.4219 6.1206 -3.6082 22 17 -0.0403 7.7932 -3.6570 23 6 0.6591 5.5034 -2.3927 24 1 -0.3633 0.4330 -0.9319 25 1 -0.3633 -1.0236 0.0910 26 1 -0.3633 0.5907 0.8410 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4367 0.7623 2.2864 30 1 2.3968 2.0249 -1.9421 31 1 0.2355 3.1576 0.8184 32 1 -0.3079 4.5941 -0.0813 33 1 -0.7646 2.9676 -0.6417 34 1 3.3335 4.1595 -0.9112 35 1 2.1595 5.2646 -0.1571 36 1 2.6017 3.7450 0.6575 37 1 1.4533 2.4180 -3.5004 38 1 1.0216 3.5126 -5.6628 39 1 0.3665 5.8852 -5.7332 40 1 0.5568 6.0620 -1.4741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:20 Heat of formation + Delta-G solvation = 4.063216 kcal Electronic energy + Delta-G solvation = -20511.498586 eV Core-core repulsion = 17544.309552 eV Total energy + Delta-G solvation = -2967.189034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77465 -37.44617 -36.32091 -34.20345 -31.62378 -30.85514 -30.03072 -28.89170 -26.66832 -25.71851 -23.28740 -22.69757 -22.23444 -20.03313 -18.79523 -17.48854 -16.76906 -15.58931 -15.18311 -14.48758 -14.12470 -13.86010 -13.77254 -13.63401 -13.37634 -13.09669 -12.63715 -12.26730 -12.14202 -11.97461 -11.71663 -11.56145 -11.30025 -11.21989 -11.03364 -10.86177 -10.75324 -10.73916 -10.43950 -10.21677 -10.13676 -9.84507 -9.62515 -8.87415 -8.75118 -8.52184 -8.31571 -7.38600 -6.36106 -4.11962 1.28657 1.37158 2.13690 3.39519 3.41512 3.59282 3.75100 4.48729 4.74893 4.88138 5.06292 5.18179 5.32038 5.46296 5.50154 5.52765 5.72847 5.84666 5.93929 6.10303 6.17279 6.21560 6.23688 6.25905 6.37663 6.41272 6.45683 6.56807 6.63994 6.75164 6.84361 6.92017 6.93401 7.05197 7.18368 7.32537 7.58194 7.91109 8.00744 8.41187 8.56035 8.80212 9.58573 10.96925 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022367 B = 0.004654 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.565341 B = 6014.782715 C = 6382.976440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.202 3.798 4 H 0.030 0.970 5 C -0.618 4.618 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 1.058 2.942 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.673 5.673 14 C 0.153 3.847 15 C -0.130 4.130 16 C -0.162 4.162 17 C -0.043 4.043 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.035 4.035 22 Cl -0.084 7.084 23 C -0.109 4.109 24 H 0.052 0.948 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.272 0.728 30 H 0.332 0.668 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 8.440 -10.680 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.094 3.906 4 H 0.047 0.953 5 C -0.657 4.657 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.542 5.542 9 Si 0.887 3.113 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.217 1.217 13 N -0.304 5.304 14 C 0.061 3.939 15 C -0.188 4.188 16 C -0.221 4.221 17 C -0.044 4.044 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.062 4.062 22 Cl -0.055 7.055 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.763 7.796 -9.684 13.703 hybrid contribution -0.289 1.149 -0.874 1.472 sum -6.052 8.945 -10.558 15.104 Atomic orbital electron populations 1.21720 0.98457 0.98686 1.00715 1.21562 0.92695 0.99646 1.00862 1.19297 0.94041 0.90427 0.86817 0.95275 1.22523 0.91950 1.45638 1.05548 0.93435 1.25612 1.06319 0.93537 0.92288 1.70794 1.08360 1.44492 1.30550 0.83704 0.75119 0.76421 0.76100 1.20862 1.21515 1.21690 1.61051 1.45214 1.10744 1.13383 1.19656 0.95074 0.89486 0.89712 1.21878 0.96559 1.00459 0.99893 1.22502 0.98000 0.98674 1.02918 1.20028 0.96098 0.92435 0.95859 1.21325 0.98165 1.01148 0.91246 1.21122 0.99448 0.93926 0.98366 1.20949 1.01998 0.94662 0.96725 1.20820 1.04770 0.85332 0.95252 1.98347 1.91009 1.17247 1.98906 1.20864 1.00682 0.94804 0.96419 0.92926 0.95357 0.94435 0.93966 0.91850 0.91646 0.84956 0.91819 0.93316 0.92230 0.92911 0.94355 0.89979 0.84131 0.85427 0.85588 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.74 37.16 0.36 -2.26 16 2 C -0.11 -2.41 5.29 -26.73 -0.14 -2.55 16 3 C 0.20 4.52 0.86 -68.87 -0.06 4.46 16 4 H 0.03 0.71 4.56 -51.93 -0.24 0.48 16 5 C -0.62 -15.60 6.89 -34.44 -0.24 -15.84 16 6 H 0.05 1.22 7.54 -52.48 -0.40 0.82 16 7 C 0.03 0.75 5.17 -17.82 -0.09 0.66 16 8 N -0.91 -25.56 12.78 55.43 0.71 -24.86 16 9 Si 1.06 24.15 29.91 -169.99 -5.08 19.07 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 13 N -0.67 -12.74 4.69 -95.42 -0.45 -13.19 16 14 C 0.15 2.60 0.78 -132.75 -0.10 2.50 16 15 C -0.13 -2.13 8.24 37.16 0.31 -1.83 16 16 C -0.16 -2.98 7.37 37.16 0.27 -2.70 16 17 C -0.04 -0.66 4.77 -104.63 -0.50 -1.16 16 18 C -0.10 -1.42 9.11 -39.58 -0.36 -1.78 16 19 C -0.11 -1.33 10.05 -39.59 -0.40 -1.73 16 20 C -0.12 -1.49 9.83 -39.55 -0.39 -1.88 16 21 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 22 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.50 16 23 C -0.11 -1.53 8.42 -39.55 -0.33 -1.87 16 24 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.57 6.16 -51.93 -0.32 1.25 16 29 H 0.27 7.63 6.18 -40.82 -0.25 7.38 16 30 H 0.33 6.39 6.56 -39.29 -0.26 6.13 16 31 H 0.06 1.14 6.45 -51.93 -0.33 0.81 16 32 H 0.05 0.70 7.21 -51.93 -0.37 0.32 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.61 7.35 -51.93 -0.38 0.23 16 36 H 0.08 1.76 6.10 -51.93 -0.32 1.44 16 37 H 0.14 2.01 6.27 -52.49 -0.33 1.68 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.74 7.06 -52.49 -0.37 1.37 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -26.31 326.67 -9.06 -35.37 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.74 Total: 7.89 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -1.92 Total: -26.70 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.26 Total: -38.04 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.31 -9.06 -35.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.433 kcal (2) G-P(sol) polarization free energy of solvation -26.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds