Wall clock time and date at job start Tue Mar 31 2020 05:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47456 * 2 1 4 4 H 1.09004 * 109.46768 * 54.67373 * 3 2 1 5 5 C 1.50692 * 109.47254 * 174.67090 * 3 2 1 6 6 H 1.08006 * 119.99867 * 116.87053 * 5 3 2 7 7 C 1.37878 * 120.00403 * 296.87006 * 5 3 2 8 8 N 1.31512 * 119.99588 * 351.86027 * 7 5 3 9 9 Si 1.86799 * 120.00050 * 171.85391 * 7 5 3 10 10 H 1.48501 * 109.47097 * 180.02562 * 9 7 5 11 11 H 1.48491 * 109.47333 * 300.00170 * 9 7 5 12 12 H 1.48505 * 109.46916 * 60.00611 * 9 7 5 13 13 N 1.46897 * 109.46903 * 294.67563 * 3 2 1 14 14 C 1.46896 * 111.00156 * 142.30340 * 13 3 2 15 15 C 1.53002 * 109.47408 * 294.71883 * 14 13 3 16 16 C 1.53003 * 109.47177 * 54.71871 * 14 13 3 17 17 C 1.50700 * 109.47319 * 174.71761 * 14 13 3 18 18 C 1.38260 * 119.99353 * 359.72358 * 17 14 13 19 19 C 1.38215 * 120.02570 * 179.76329 * 18 17 14 20 20 C 1.38241 * 120.01668 * 0.51368 * 19 18 17 21 21 C 1.38330 * 119.98000 * 359.74343 * 20 19 18 22 22 Cl 1.73601 * 120.00977 * 180.02562 * 21 20 19 23 23 C 1.38200 * 119.99277 * 179.97438 * 17 14 13 24 24 H 1.08993 * 109.46909 * 65.07643 * 1 2 3 25 25 H 1.09000 * 109.47145 * 185.08170 * 1 2 3 26 26 H 1.09007 * 109.46816 * 305.08071 * 1 2 3 27 27 H 1.09000 * 109.47424 * 239.99612 * 2 1 3 28 28 H 1.09003 * 109.47104 * 119.99896 * 2 1 3 29 29 H 0.96996 * 120.00358 * 356.24177 * 8 7 5 30 30 H 1.00898 * 110.99951 * 266.25801 * 13 3 2 31 31 H 1.09006 * 109.46890 * 65.28257 * 15 14 13 32 32 H 1.08997 * 109.47713 * 185.28825 * 15 14 13 33 33 H 1.09000 * 109.47051 * 305.29215 * 15 14 13 34 34 H 1.08991 * 109.47029 * 58.88725 * 16 14 13 35 35 H 1.09001 * 109.47197 * 178.89045 * 16 14 13 36 36 H 1.09003 * 109.46855 * 298.88493 * 16 14 13 37 37 H 1.08001 * 119.98676 * 0.02562 * 18 17 14 38 38 H 1.08005 * 119.99229 * 180.25536 * 19 18 17 39 39 H 1.07999 * 120.00674 * 179.76302 * 20 19 18 40 40 H 1.08000 * 120.00476 * 359.96099 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9831 0.8385 5 6 3.5412 1.4445 0.1320 6 1 4.1528 1.8419 -0.6646 7 6 4.1340 0.9390 1.2695 8 7 3.3935 0.6035 2.3033 9 14 5.9889 0.7304 1.3423 10 1 6.3728 0.1721 2.6637 11 1 6.4253 -0.1971 0.2679 12 1 6.6432 2.0501 1.1530 13 7 1.6582 2.0968 -1.2585 14 6 1.2864 3.4996 -1.0308 15 6 0.0214 3.5591 -0.1721 16 6 2.4273 4.2189 -0.3085 17 6 1.0270 4.1718 -2.3544 18 6 1.1622 3.4576 -3.5306 19 6 0.9198 4.0721 -4.7446 20 6 0.5522 5.4041 -4.7843 21 6 0.4219 6.1206 -3.6082 22 17 -0.0403 7.7932 -3.6570 23 6 0.6591 5.5034 -2.3927 24 1 -0.3633 0.4330 -0.9319 25 1 -0.3633 -1.0236 0.0910 26 1 -0.3633 0.5907 0.8410 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4367 0.7623 2.2864 30 1 2.3968 2.0249 -1.9421 31 1 0.2355 3.1576 0.8184 32 1 -0.3079 4.5941 -0.0813 33 1 -0.7646 2.9676 -0.6417 34 1 3.3335 4.1595 -0.9112 35 1 2.1595 5.2646 -0.1571 36 1 2.6017 3.7450 0.6575 37 1 1.4533 2.4180 -3.5004 38 1 1.0216 3.5126 -5.6628 39 1 0.3665 5.8852 -5.7332 40 1 0.5568 6.0620 -1.4741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:20 Heat of formation + Delta-G solvation = -8.193089 kcal Electronic energy + Delta-G solvation = -20512.030059 eV Core-core repulsion = 17544.309552 eV Total energy + Delta-G solvation = -2967.720508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96436 -38.82877 -37.37021 -35.82962 -33.46380 -32.04855 -31.23666 -30.25948 -28.16567 -27.48418 -24.98282 -24.03064 -23.30885 -21.64851 -20.23726 -19.22440 -18.11233 -16.83835 -16.27036 -15.83560 -15.65608 -15.59263 -15.29086 -14.79872 -14.67033 -14.54247 -14.06760 -13.95905 -13.61250 -13.47076 -13.10551 -12.82151 -12.70982 -12.50772 -12.44138 -12.25904 -12.20134 -12.09750 -12.05136 -11.96409 -11.62931 -11.54673 -11.26944 -10.71193 -10.33778 -9.82129 -9.58270 -9.07842 -8.43541 -6.21901 0.25401 0.34834 1.15717 1.53315 1.58437 1.76964 2.59049 2.71220 3.24414 3.45944 3.67940 3.94594 4.17350 4.18688 4.30540 4.38666 4.49140 4.50967 4.60778 4.69705 4.73023 4.76211 4.87508 4.89258 4.92659 5.04912 5.09687 5.22853 5.26185 5.31600 5.41920 5.43853 5.48797 5.52571 5.68043 5.77155 5.89513 6.03066 6.12096 6.60044 6.65614 6.87370 7.55537 8.86041 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022367 B = 0.004654 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.565341 B = 6014.782715 C = 6382.976440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.211 3.789 4 H 0.009 0.991 5 C -0.614 4.614 6 H 0.041 0.959 7 C -0.020 4.020 8 N -0.933 5.933 9 Si 1.098 2.902 10 H -0.290 1.290 11 H -0.275 1.275 12 H -0.279 1.279 13 N -0.662 5.662 14 C 0.154 3.846 15 C -0.125 4.125 16 C -0.152 4.152 17 C -0.058 4.058 18 C -0.112 4.112 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.041 4.041 22 Cl -0.074 7.074 23 C -0.115 4.115 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 9.419 -12.984 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.102 3.898 4 H 0.027 0.973 5 C -0.653 4.653 6 H 0.059 0.941 7 C -0.220 4.220 8 N -0.571 5.571 9 Si 0.923 3.077 10 H -0.215 1.215 11 H -0.201 1.201 12 H -0.205 1.205 13 N -0.292 5.292 14 C 0.063 3.937 15 C -0.182 4.182 16 C -0.211 4.211 17 C -0.059 4.059 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.068 4.068 22 Cl -0.045 7.045 23 C -0.134 4.134 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.277 8.789 -12.011 16.152 hybrid contribution -0.168 0.933 -0.236 0.977 sum -6.445 9.721 -12.247 16.913 Atomic orbital electron populations 1.21573 0.95788 0.99824 1.01061 1.21434 0.95048 0.98820 0.99029 1.19058 0.92300 0.90770 0.87672 0.97295 1.22813 0.93615 1.44145 1.04753 0.94052 1.26732 1.09417 0.93505 0.92309 1.70889 1.07930 1.46670 1.31592 0.83152 0.71449 0.77069 0.76042 1.21544 1.20081 1.20450 1.60996 1.44563 1.12153 1.11494 1.19643 0.94632 0.88198 0.91247 1.21820 0.96294 1.01677 0.98439 1.22361 0.98199 0.99809 1.00737 1.19782 0.98177 0.93069 0.94886 1.21378 0.98770 1.01047 0.91844 1.21409 0.97978 0.94114 0.98575 1.21291 1.00459 0.94556 0.97397 1.20938 1.04595 0.85976 0.95291 1.98353 1.90873 1.16393 1.98879 1.20867 1.01009 0.94382 0.97175 0.91890 0.93687 0.94782 0.94374 0.94952 0.92803 0.85074 0.94072 0.91258 0.91982 0.94158 0.92272 0.93693 0.84704 0.82525 0.83041 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.74 71.98 0.70 -3.98 16 2 C -0.10 -4.70 5.29 30.59 0.16 -4.54 16 3 C 0.21 9.66 0.86 44.17 0.04 9.70 16 4 H 0.01 0.47 4.56 -2.38 -0.01 0.46 16 5 C -0.61 -31.70 6.89 25.60 0.18 -31.52 16 6 H 0.04 2.14 7.54 -2.91 -0.02 2.12 16 7 C -0.02 -1.06 5.17 84.66 0.44 -0.62 16 8 N -0.93 -54.35 12.78 21.45 0.27 -54.08 16 9 Si 1.10 49.20 29.91 68.60 2.05 51.25 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 13 N -0.66 -25.12 4.69 -455.79 -2.14 -27.25 16 14 C 0.15 5.23 0.78 2.78 0.00 5.23 16 15 C -0.12 -4.05 8.24 71.98 0.59 -3.46 16 16 C -0.15 -5.66 7.37 71.98 0.53 -5.13 16 17 C -0.06 -1.69 4.77 -19.87 -0.09 -1.79 16 18 C -0.11 -2.95 9.11 22.27 0.20 -2.75 16 19 C -0.10 -2.14 10.05 22.26 0.22 -1.92 16 20 C -0.12 -2.42 9.83 22.29 0.22 -2.20 16 21 C -0.04 -0.97 6.32 22.32 0.14 -0.83 16 22 Cl -0.07 -1.57 28.96 -2.72 -0.08 -1.65 16 23 C -0.12 -3.04 8.42 22.29 0.19 -2.85 16 24 H 0.06 2.21 7.90 -2.39 -0.02 2.19 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 1.65 6.16 -2.39 -0.01 1.63 16 29 H 0.26 15.34 6.18 -92.71 -0.57 14.77 16 30 H 0.33 12.73 6.56 -89.70 -0.59 12.14 16 31 H 0.04 1.50 6.45 -2.38 -0.02 1.49 16 32 H 0.07 1.93 7.21 -2.39 -0.02 1.91 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.89 7.35 -2.39 -0.02 1.88 16 36 H 0.04 1.99 6.10 -2.39 -0.01 1.97 16 37 H 0.14 3.67 6.27 -2.91 -0.02 3.65 16 38 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.13 3.31 7.06 -2.91 -0.02 3.29 16 Total: -1.00 -57.25 326.67 4.28 -52.97 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.65 Total: 25.42 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 3.52 Total: -46.66 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -1.86 Total: -81.33 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -57.25 4.28 -52.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.777 kcal (2) G-P(sol) polarization free energy of solvation -57.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds