Wall clock time and date at job start Tue Mar 31 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47178 * 2 1 4 4 H 1.09005 * 109.46776 * 54.88652 * 3 2 1 5 5 C 1.50702 * 109.47166 * 174.88447 * 3 2 1 6 6 H 1.07998 * 120.00053 * 119.99719 * 5 3 2 7 7 C 1.37879 * 120.00006 * 300.00188 * 5 3 2 8 8 N 1.31519 * 119.99907 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99936 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47212 * 89.99876 * 9 7 5 11 11 H 1.48503 * 109.46954 * 209.99959 * 9 7 5 12 12 H 1.48498 * 109.47017 * 330.00046 * 9 7 5 13 13 N 1.46898 * 109.47006 * 294.88752 * 3 2 1 14 14 C 1.46898 * 110.99639 * 153.64644 * 13 3 2 15 15 H 1.09001 * 109.47405 * 31.12724 * 14 13 3 16 16 C 1.52999 * 109.47205 * 271.12247 * 14 13 3 17 17 C 1.50707 * 109.46704 * 151.12552 * 14 13 3 18 18 C 1.38259 * 119.98584 * 25.00341 * 17 14 13 19 19 C 1.38199 * 120.00926 * 180.02562 * 18 17 14 20 20 C 1.38372 * 119.98984 * 359.97304 * 19 18 17 21 21 Cl 1.73595 * 120.01413 * 179.97438 * 20 19 18 22 22 C 1.38333 * 119.96993 * 0.02562 * 20 19 18 23 23 C 1.38223 * 119.98337 * 204.72628 * 17 14 13 24 24 C 1.50697 * 119.99649 * 359.97438 * 23 17 14 25 25 H 1.09000 * 109.47057 * 304.13442 * 1 2 3 26 26 H 1.09003 * 109.46694 * 64.13270 * 1 2 3 27 27 H 1.08997 * 109.47289 * 184.13339 * 1 2 3 28 28 H 1.09004 * 109.47189 * 239.99861 * 2 1 3 29 29 H 1.09006 * 109.47071 * 120.00156 * 2 1 3 30 30 H 0.97003 * 119.99346 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00160 * 29.69190 * 13 3 2 32 32 H 1.08998 * 109.47283 * 304.77408 * 16 14 13 33 33 H 1.08997 * 109.46775 * 64.77562 * 16 14 13 34 34 H 1.08997 * 109.47000 * 184.76702 * 16 14 13 35 35 H 1.07994 * 119.99799 * 359.97438 * 18 17 14 36 36 H 1.07995 * 120.00323 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00108 * 179.97438 * 22 20 19 38 38 H 1.08999 * 109.47194 * 89.99968 * 24 23 17 39 39 H 1.09006 * 109.47134 * 210.00505 * 24 23 17 40 40 H 1.09008 * 109.46827 * 329.99642 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 0.8407 5 6 3.5417 1.4444 0.1267 6 1 4.1485 1.8884 -0.6486 7 6 4.1410 0.8792 1.2323 8 7 3.4021 0.3389 2.1767 9 14 6.0024 0.8809 1.3890 10 1 6.4389 2.1142 2.0915 11 1 6.4350 -0.3097 2.1641 12 1 6.6130 0.8395 0.0360 13 7 1.6537 2.0984 -1.2564 14 6 1.5434 3.5525 -1.0787 15 1 2.2509 3.8802 -0.3171 16 6 0.1211 3.9061 -0.6396 17 6 1.8529 4.2426 -2.3823 18 6 1.6707 3.5738 -3.5785 19 6 1.9549 4.2060 -4.7741 20 6 2.4213 5.5087 -4.7739 21 17 2.7791 6.3033 -6.2753 22 6 2.6033 6.1773 -3.5766 23 6 2.3133 5.5459 -2.3816 24 6 2.5051 6.2765 -1.0775 25 1 -0.3633 0.5767 0.8506 26 1 -0.3633 0.4484 -0.9247 27 1 -0.3634 -1.0249 0.0741 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8238 -0.0584 2.9547 31 1 0.7942 1.7119 -1.6167 32 1 -0.5920 3.5040 -1.3593 33 1 -0.0731 3.4766 0.3431 34 1 0.0152 4.9898 -0.5897 35 1 1.3071 2.5569 -3.5786 36 1 1.8130 3.6833 -5.7085 37 1 2.9677 7.1940 -3.5758 38 1 3.5192 6.1107 -0.7139 39 1 2.3443 7.3435 -1.2318 40 1 1.7904 5.9037 -0.3437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:33 Heat of formation + Delta-G solvation = 0.307674 kcal Electronic energy + Delta-G solvation = -20160.143206 eV Core-core repulsion = 17192.791320 eV Total energy + Delta-G solvation = -2967.351887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.60817 -36.96804 -36.17671 -33.68452 -32.54441 -31.61313 -29.77148 -28.34143 -26.87119 -26.07348 -23.43066 -22.76235 -21.42169 -19.91880 -19.58673 -16.57446 -16.21912 -15.74693 -15.16380 -14.71383 -14.24563 -13.88915 -13.76405 -13.46714 -13.07299 -12.94379 -12.67430 -12.57461 -12.39457 -12.15988 -11.93964 -11.70799 -11.43351 -11.23362 -11.01881 -10.87979 -10.80965 -10.67242 -10.61506 -10.39975 -9.96827 -9.72348 -9.62221 -9.11860 -8.61292 -8.36946 -8.18857 -7.29306 -5.98363 -4.02146 1.41120 1.53563 2.25861 3.31195 3.38349 3.43667 3.85478 4.43865 4.88180 5.04940 5.08261 5.26030 5.32137 5.36516 5.55722 5.66790 5.70660 5.76811 5.80782 5.92837 6.03680 6.12102 6.13358 6.14829 6.28438 6.37644 6.39131 6.43903 6.49190 6.62553 6.80312 6.95579 7.05264 7.09587 7.14492 7.47544 7.75305 7.90871 8.25923 8.36998 8.71188 9.06484 9.63215 11.06872 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.004823 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.038845 B = 5804.468899 C = 6413.110795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.122 3.878 15 H 0.096 0.904 16 C -0.173 4.173 17 C -0.047 4.047 18 C -0.078 4.078 19 C -0.122 4.122 20 C -0.042 4.042 21 Cl -0.089 7.089 22 C -0.116 4.116 23 C -0.075 4.075 24 C -0.118 4.118 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.259 0.741 31 H 0.318 0.682 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 9.379 -9.183 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.011 3.989 15 H 0.114 0.886 16 C -0.232 4.232 17 C -0.048 4.048 18 C -0.097 4.097 19 C -0.140 4.140 20 C -0.068 4.068 21 Cl -0.060 7.060 22 C -0.135 4.135 23 C -0.075 4.075 24 C -0.175 4.175 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.878 9.361 -9.365 14.112 hybrid contribution 0.290 0.042 0.435 0.524 sum -4.589 9.403 -8.930 13.756 Atomic orbital electron populations 1.21884 0.99620 0.99685 0.99523 1.21782 0.91172 1.00415 1.03139 1.19173 0.95354 0.89868 0.84250 0.97801 1.21217 0.91218 1.36278 1.04365 0.92086 1.24937 0.97984 0.95636 0.95866 1.69871 1.34686 1.39447 1.09635 0.86589 0.85982 0.77335 0.78056 1.20903 1.21388 1.19925 1.60779 1.36252 1.00776 1.33155 1.20415 0.95467 0.90141 0.92876 0.88587 1.22488 0.97645 1.01408 1.01672 1.20084 0.96065 0.92546 0.96062 1.20989 0.98206 0.99965 0.90519 1.21010 1.00922 0.92963 0.99140 1.20790 1.05394 0.94290 0.86348 1.98334 1.93728 1.80474 1.33509 1.20762 1.02210 1.00185 0.90348 1.19683 0.98896 0.94223 0.94744 1.20873 1.03198 0.99143 0.94247 0.93898 0.94650 0.94423 0.94048 0.88232 0.93114 0.86368 0.92931 0.92078 0.92673 0.84538 0.85603 0.85638 0.90614 0.91867 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.67 37.16 0.36 -2.38 16 2 C -0.13 -2.85 5.35 -26.73 -0.14 -2.99 16 3 C 0.22 5.16 1.83 -68.86 -0.13 5.03 16 4 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 5 C -0.49 -13.09 8.59 -34.44 -0.30 -13.39 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -24.82 11.29 55.43 0.63 -24.20 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.24 4.97 -102.16 -0.51 -13.74 16 14 C 0.12 2.11 1.89 -68.86 -0.13 1.98 16 15 H 0.10 1.88 6.51 -51.93 -0.34 1.55 16 16 C -0.17 -2.56 8.92 37.16 0.33 -2.23 16 17 C -0.05 -0.74 5.06 -104.62 -0.53 -1.27 16 18 C -0.08 -1.19 9.32 -39.59 -0.37 -1.56 16 19 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 16 20 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 21 Cl -0.09 -1.10 28.96 -51.86 -1.50 -2.60 16 22 C -0.12 -1.59 9.49 -39.55 -0.38 -1.96 16 23 C -0.07 -1.09 5.88 -104.63 -0.62 -1.70 16 24 C -0.12 -1.49 9.22 36.00 0.33 -1.16 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.32 5.64 5.77 -39.29 -0.23 5.42 16 32 H 0.05 0.72 8.03 -51.93 -0.42 0.31 16 33 H 0.06 0.96 7.79 -51.93 -0.40 0.55 16 34 H 0.05 0.72 6.99 -51.93 -0.36 0.36 16 35 H 0.14 2.03 7.01 -52.49 -0.37 1.67 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.07 0.94 5.46 -51.92 -0.28 0.66 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -27.12 333.16 -9.62 -36.73 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.94 Total: 5.72 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.29 Total: -23.14 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.12 Total: -37.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.12 -9.62 -36.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.040 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds