Wall clock time and date at job start Tue Mar 31 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47178 * 2 1 4 4 H 1.09005 * 109.46776 * 54.88652 * 3 2 1 5 5 C 1.50702 * 109.47166 * 174.88447 * 3 2 1 6 6 H 1.07998 * 120.00053 * 119.99719 * 5 3 2 7 7 C 1.37879 * 120.00006 * 300.00188 * 5 3 2 8 8 N 1.31519 * 119.99907 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99936 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47212 * 89.99876 * 9 7 5 11 11 H 1.48503 * 109.46954 * 209.99959 * 9 7 5 12 12 H 1.48498 * 109.47017 * 330.00046 * 9 7 5 13 13 N 1.46898 * 109.47006 * 294.88752 * 3 2 1 14 14 C 1.46898 * 110.99639 * 153.64644 * 13 3 2 15 15 H 1.09001 * 109.47405 * 31.12724 * 14 13 3 16 16 C 1.52999 * 109.47205 * 271.12247 * 14 13 3 17 17 C 1.50707 * 109.46704 * 151.12552 * 14 13 3 18 18 C 1.38259 * 119.98584 * 25.00341 * 17 14 13 19 19 C 1.38199 * 120.00926 * 180.02562 * 18 17 14 20 20 C 1.38372 * 119.98984 * 359.97304 * 19 18 17 21 21 Cl 1.73595 * 120.01413 * 179.97438 * 20 19 18 22 22 C 1.38333 * 119.96993 * 0.02562 * 20 19 18 23 23 C 1.38223 * 119.98337 * 204.72628 * 17 14 13 24 24 C 1.50697 * 119.99649 * 359.97438 * 23 17 14 25 25 H 1.09000 * 109.47057 * 304.13442 * 1 2 3 26 26 H 1.09003 * 109.46694 * 64.13270 * 1 2 3 27 27 H 1.08997 * 109.47289 * 184.13339 * 1 2 3 28 28 H 1.09004 * 109.47189 * 239.99861 * 2 1 3 29 29 H 1.09006 * 109.47071 * 120.00156 * 2 1 3 30 30 H 0.97003 * 119.99346 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00160 * 29.69190 * 13 3 2 32 32 H 1.08998 * 109.47283 * 304.77408 * 16 14 13 33 33 H 1.08997 * 109.46775 * 64.77562 * 16 14 13 34 34 H 1.08997 * 109.47000 * 184.76702 * 16 14 13 35 35 H 1.07994 * 119.99799 * 359.97438 * 18 17 14 36 36 H 1.07995 * 120.00323 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00108 * 179.97438 * 22 20 19 38 38 H 1.08999 * 109.47194 * 89.99968 * 24 23 17 39 39 H 1.09006 * 109.47134 * 210.00505 * 24 23 17 40 40 H 1.09008 * 109.46827 * 329.99642 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9821 0.8407 5 6 3.5417 1.4444 0.1267 6 1 4.1485 1.8884 -0.6486 7 6 4.1410 0.8792 1.2323 8 7 3.4021 0.3389 2.1767 9 14 6.0024 0.8809 1.3890 10 1 6.4389 2.1142 2.0915 11 1 6.4350 -0.3097 2.1641 12 1 6.6130 0.8395 0.0360 13 7 1.6537 2.0984 -1.2564 14 6 1.5434 3.5525 -1.0787 15 1 2.2509 3.8802 -0.3171 16 6 0.1211 3.9061 -0.6396 17 6 1.8529 4.2426 -2.3823 18 6 1.6707 3.5738 -3.5785 19 6 1.9549 4.2060 -4.7741 20 6 2.4213 5.5087 -4.7739 21 17 2.7791 6.3033 -6.2753 22 6 2.6033 6.1773 -3.5766 23 6 2.3133 5.5459 -2.3816 24 6 2.5051 6.2765 -1.0775 25 1 -0.3633 0.5767 0.8506 26 1 -0.3633 0.4484 -0.9247 27 1 -0.3634 -1.0249 0.0741 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8238 -0.0584 2.9547 31 1 0.7942 1.7119 -1.6167 32 1 -0.5920 3.5040 -1.3593 33 1 -0.0731 3.4766 0.3431 34 1 0.0152 4.9898 -0.5897 35 1 1.3071 2.5569 -3.5786 36 1 1.8130 3.6833 -5.7085 37 1 2.9677 7.1940 -3.5758 38 1 3.5192 6.1107 -0.7139 39 1 2.3443 7.3435 -1.2318 40 1 1.7904 5.9037 -0.3437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:33 Heat of formation + Delta-G solvation = -12.484290 kcal Electronic energy + Delta-G solvation = -20160.697907 eV Core-core repulsion = 17192.791320 eV Total energy + Delta-G solvation = -2967.906588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77773 -38.40854 -37.36224 -35.25847 -33.83717 -33.31936 -31.09909 -29.74040 -28.08877 -27.76711 -24.88637 -24.29644 -22.61219 -21.39387 -21.14382 -18.28282 -17.67849 -17.11046 -16.53410 -16.35056 -15.70673 -15.35942 -14.95735 -14.88447 -14.42728 -14.25239 -14.05648 -13.73364 -13.66185 -13.55908 -13.20766 -13.03199 -13.01119 -12.75944 -12.56880 -12.54301 -12.17383 -11.97257 -11.93074 -11.88093 -11.63577 -11.49734 -11.25797 -10.99810 -10.40806 -9.70960 -9.33980 -8.94053 -8.04247 -6.14931 0.27851 0.42976 1.20423 1.39886 1.42368 1.52040 2.44900 2.72108 3.21083 3.58071 3.92262 3.97120 4.02886 4.28958 4.38146 4.42734 4.50828 4.55365 4.60882 4.67139 4.73506 4.74232 4.82854 4.96774 5.00146 5.04469 5.15806 5.21556 5.26866 5.30582 5.35013 5.41863 5.46707 5.64787 5.76037 5.83036 5.94548 5.96984 6.40969 6.57592 6.99267 7.04783 7.54104 8.98304 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.004823 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.038845 B = 5804.468899 C = 6413.110795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.230 3.770 4 H -0.024 1.024 5 C -0.506 4.506 6 H 0.044 0.956 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.126 3.874 15 H 0.066 0.934 16 C -0.164 4.164 17 C -0.066 4.066 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.046 4.046 21 Cl -0.074 7.074 22 C -0.116 4.116 23 C -0.081 4.081 24 C -0.117 4.117 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.259 0.741 31 H 0.330 0.670 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 10.409 -10.554 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.122 3.878 4 H -0.006 1.006 5 C -0.544 4.544 6 H 0.063 0.937 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.773 3.227 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.311 5.311 14 C 0.016 3.984 15 H 0.084 0.916 16 C -0.223 4.223 17 C -0.067 4.067 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.073 4.073 21 Cl -0.046 7.046 22 C -0.135 4.135 23 C -0.082 4.082 24 C -0.174 4.174 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.252 10.402 -10.749 15.853 hybrid contribution 0.417 -0.222 0.787 0.918 sum -4.835 10.180 -9.962 15.042 Atomic orbital electron populations 1.21744 0.96225 1.01033 1.00552 1.21606 0.94223 0.99157 1.01115 1.18882 0.93547 0.90460 0.84905 1.00641 1.21452 0.93024 1.36004 1.03964 0.93731 1.25568 1.01601 0.95532 0.95740 1.69989 1.35953 1.39964 1.09914 0.85737 0.81696 0.77465 0.77791 1.20387 1.20928 1.20066 1.60629 1.37182 1.02172 1.31072 1.20299 0.96257 0.88643 0.93216 0.91607 1.22375 0.96192 1.02621 1.01084 1.20023 0.97820 0.93398 0.95417 1.21037 0.98766 1.00055 0.90831 1.21187 1.00398 0.93196 0.99366 1.20945 1.04824 0.94387 0.87114 1.98341 1.93570 1.80133 1.32513 1.20996 1.01554 1.01062 0.89875 1.19877 0.98575 0.93886 0.95884 1.20894 1.02553 1.00605 0.93310 0.94375 0.92274 0.92691 0.94651 0.91547 0.93177 0.85110 0.91529 0.93456 0.90865 0.84651 0.83860 0.83600 0.91416 0.89234 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.67 71.98 0.70 -4.22 16 2 C -0.12 -5.57 5.35 30.60 0.16 -5.40 16 3 C 0.23 11.02 1.83 44.17 0.08 11.10 16 4 H -0.02 -1.27 7.45 -2.38 -0.02 -1.29 16 5 C -0.51 -27.61 8.59 25.60 0.22 -27.39 16 6 H 0.04 2.53 7.81 -2.91 -0.02 2.50 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -51.94 11.29 21.45 0.24 -51.69 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.68 -26.63 4.97 -477.14 -2.37 -29.00 16 14 C 0.13 4.39 1.89 44.17 0.08 4.47 16 15 H 0.07 2.68 6.51 -2.39 -0.02 2.66 16 16 C -0.16 -4.73 8.92 71.98 0.64 -4.09 16 17 C -0.07 -2.05 5.06 -19.86 -0.10 -2.15 16 18 C -0.09 -2.60 9.32 22.27 0.21 -2.39 16 19 C -0.12 -3.21 9.83 22.29 0.22 -2.99 16 20 C -0.05 -1.18 6.32 22.32 0.14 -1.04 16 21 Cl -0.07 -1.66 28.96 -2.72 -0.08 -1.74 16 22 C -0.12 -2.93 9.49 22.29 0.21 -2.72 16 23 C -0.08 -2.27 5.88 -19.87 -0.12 -2.39 16 24 C -0.12 -2.84 9.22 71.24 0.66 -2.18 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.81 6.57 -2.39 -0.02 1.79 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.03 1.60 8.14 -2.38 -0.02 1.59 16 29 H 0.07 3.48 5.95 -2.38 -0.01 3.47 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.33 11.44 5.77 -89.70 -0.52 10.92 16 32 H 0.07 1.72 8.03 -2.39 -0.02 1.70 16 33 H 0.05 1.48 7.79 -2.39 -0.02 1.46 16 34 H 0.07 1.83 6.99 -2.39 -0.02 1.81 16 35 H 0.14 3.91 7.01 -2.91 -0.02 3.89 16 36 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.65 8.09 -2.38 -0.02 1.63 16 40 H 0.07 1.73 5.46 -2.38 -0.01 1.72 16 Total: -1.00 -58.57 333.16 3.89 -54.69 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.52 Total: 21.78 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 3.55 Total: -40.19 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.13 Total: -80.70 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -58.57 3.89 -54.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.203 kcal (2) G-P(sol) polarization free energy of solvation -58.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds