Wall clock time and date at job start Tue Mar 31 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47467 * 2 1 4 4 H 1.09001 * 109.47010 * 56.78220 * 3 2 1 5 5 C 1.50702 * 109.47102 * 176.78288 * 3 2 1 6 6 H 1.07999 * 119.99606 * 120.00077 * 5 3 2 7 7 C 1.37877 * 120.00127 * 299.99763 * 5 3 2 8 8 N 1.31510 * 119.99942 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99702 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47123 * 90.00536 * 9 7 5 11 11 H 1.48499 * 109.47181 * 209.99793 * 9 7 5 12 12 H 1.48493 * 109.47563 * 330.00248 * 9 7 5 13 13 N 1.46899 * 109.46656 * 296.78389 * 3 2 1 14 14 C 1.46906 * 110.99847 * 295.66187 * 13 3 2 15 15 C 1.46904 * 111.00010 * 171.71265 * 13 3 2 16 16 C 1.52991 * 109.47433 * 199.22572 * 15 13 3 17 17 C 1.50699 * 109.47615 * 179.97438 * 16 15 13 18 18 C 1.38236 * 119.98701 * 269.73007 * 17 16 15 19 19 C 1.38223 * 120.01285 * 179.72289 * 18 17 16 20 20 C 1.38357 * 119.98276 * 0.54360 * 19 18 17 21 21 Cl 1.73596 * 120.01251 * 179.70403 * 20 19 18 22 22 C 1.38350 * 119.97310 * 359.73089 * 20 19 18 23 23 C 1.38212 * 119.98835 * 359.97438 * 22 20 19 24 24 H 1.09000 * 109.46347 * 55.42592 * 1 2 3 25 25 H 1.08997 * 109.47379 * 175.42359 * 1 2 3 26 26 H 1.08997 * 109.47064 * 295.42885 * 1 2 3 27 27 H 1.08992 * 109.47269 * 239.99051 * 2 1 3 28 28 H 1.09004 * 109.46939 * 119.99461 * 2 1 3 29 29 H 0.96996 * 119.99763 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46917 * 296.04522 * 14 13 3 31 31 H 1.08999 * 109.46959 * 56.05465 * 14 13 3 32 32 H 1.09006 * 109.46711 * 176.04972 * 14 13 3 33 33 H 1.08997 * 109.47205 * 79.22212 * 15 13 3 34 34 H 1.09001 * 109.46602 * 319.22494 * 15 13 3 35 35 H 1.08998 * 109.47490 * 299.99983 * 16 15 13 36 36 H 1.09007 * 109.47307 * 59.99682 * 16 15 13 37 37 H 1.08002 * 119.99613 * 359.97438 * 18 17 16 38 38 H 1.07998 * 120.00772 * 180.27549 * 19 18 17 39 39 H 1.08003 * 120.00293 * 179.97438 * 22 20 19 40 40 H 1.07999 * 119.99452 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6305 1.9727 0.8597 5 6 3.5450 1.4431 0.0797 6 1 4.1273 1.8958 -0.7092 7 6 4.1784 0.8659 1.1598 8 7 5.4917 0.8669 1.2296 9 14 3.1711 0.0837 2.5247 10 1 2.9401 -1.3492 2.2105 11 1 3.9069 0.1961 3.8097 12 1 1.8657 0.7821 2.6390 13 7 1.6149 2.1121 -1.2364 14 6 2.2322 1.4859 -2.4133 15 6 1.9149 3.5493 -1.1867 16 6 1.0632 4.2843 -2.2236 17 6 1.3705 5.7587 -2.1722 18 6 0.6447 6.5870 -1.3367 19 6 0.9298 7.9385 -1.2848 20 6 1.9344 8.4641 -2.0778 21 17 2.2881 10.1626 -2.0190 22 6 2.6567 7.6355 -2.9180 23 6 2.3746 6.2833 -2.9644 24 1 -0.3632 0.5832 -0.8462 25 1 -0.3634 -1.0243 -0.0820 26 1 -0.3633 0.4413 0.9281 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 5.9372 0.4605 1.9893 30 1 3.3135 1.6160 -2.3688 31 1 1.9943 0.4223 -2.4257 32 1 1.8467 1.9550 -3.3186 33 1 2.9708 3.7079 -1.4055 34 1 1.6883 3.9335 -0.1921 35 1 1.2898 3.9001 -3.2181 36 1 0.0072 4.1257 -2.0047 37 1 -0.1427 6.1774 -0.7212 38 1 0.3657 8.5848 -0.6287 39 1 3.4407 8.0453 -3.5375 40 1 2.9381 5.6364 -3.6205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:22 Heat of formation + Delta-G solvation = 14.703615 kcal Electronic energy + Delta-G solvation = -19725.246416 eV Core-core repulsion = 16758.518784 eV Total energy + Delta-G solvation = -2966.727632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46843 -37.60828 -36.55170 -33.84273 -32.14239 -31.47972 -31.08439 -28.09924 -27.27623 -25.10057 -23.02881 -22.84896 -21.88968 -20.45411 -19.18970 -17.12155 -16.81736 -15.79206 -15.58066 -15.13787 -14.37604 -14.12036 -13.82626 -13.57937 -13.49399 -13.32523 -12.99608 -12.55238 -12.27145 -11.96826 -11.77873 -11.75336 -11.45609 -11.31143 -11.13700 -11.05732 -10.91426 -10.87170 -10.47107 -10.20656 -10.08811 -9.67683 -9.57561 -9.24651 -9.06239 -8.59833 -8.49834 -7.22350 -6.13734 -4.14513 1.13348 1.27322 2.07128 3.24053 3.35255 3.37087 3.60826 4.35573 4.71647 4.73771 4.84500 5.18057 5.21757 5.27483 5.33699 5.57340 5.64413 5.82021 5.92246 5.94504 6.00894 6.10380 6.13633 6.18691 6.21337 6.24640 6.30490 6.45910 6.61137 6.66938 6.69301 6.71999 6.81763 6.85280 6.92006 7.08657 7.22392 7.53779 8.05386 8.11504 8.42896 8.88254 9.49839 10.99123 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021812 B = 0.003818 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.412546 B = 7330.962960 C = 7805.098854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.531 5.531 14 C 0.029 3.971 15 C 0.072 3.928 16 C -0.080 4.080 17 C -0.062 4.062 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.045 4.045 21 Cl -0.082 7.082 22 C -0.109 4.109 23 C -0.104 4.104 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 11.230 -7.418 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.254 5.254 14 C -0.119 4.119 15 C -0.057 4.057 16 C -0.117 4.117 17 C -0.063 4.063 18 C -0.123 4.123 19 C -0.128 4.128 20 C -0.071 4.071 21 Cl -0.053 7.053 22 C -0.128 4.128 23 C -0.122 4.122 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.995 11.269 -7.342 16.757 hybrid contribution 0.721 -0.260 0.963 1.230 sum -9.275 11.009 -6.379 15.745 Atomic orbital electron populations 1.21741 0.97374 0.99514 1.01532 1.21930 0.94056 0.99328 1.00621 1.19733 0.94312 0.90472 0.88146 0.94525 1.21629 0.90441 1.38505 1.07781 0.90604 1.24980 0.94685 0.95366 0.97832 1.69911 1.07927 1.44819 1.30890 0.86860 0.80418 0.79903 0.81112 1.20531 1.22606 1.18897 1.62335 1.57618 1.01540 1.03896 1.22275 0.98217 0.99286 0.92153 1.21818 0.97116 0.88964 0.97768 1.20710 1.01447 0.88798 1.00784 1.20157 0.94700 0.96570 0.94877 1.21072 1.00166 0.92332 0.98710 1.21022 0.97038 0.95809 0.98963 1.20878 0.99949 0.84770 1.01497 1.98353 1.94531 1.14570 1.97883 1.21022 0.99620 0.93398 0.98715 1.21076 0.97400 0.94189 0.99574 0.91711 0.94822 0.94110 0.92217 0.93636 0.92662 0.94471 0.92120 0.93851 0.94186 0.91597 0.91096 0.90448 0.84990 0.85225 0.85212 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.84 37.16 0.37 -2.19 16 2 C -0.12 -2.57 4.76 -26.73 -0.13 -2.70 16 3 C 0.18 4.08 1.31 -68.86 -0.09 3.99 16 4 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 5 C -0.55 -14.59 7.91 -34.44 -0.27 -14.86 16 6 H 0.08 2.22 6.18 -52.49 -0.32 1.89 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 9 Si 0.89 21.66 24.40 -169.99 -4.15 17.51 16 10 H -0.28 -6.66 6.84 56.52 0.39 -6.27 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 13 N -0.53 -10.18 3.96 -236.28 -0.93 -11.11 16 14 C 0.03 0.53 8.74 60.07 0.52 1.06 16 15 C 0.07 1.27 4.46 -3.83 -0.02 1.25 16 16 C -0.08 -1.08 5.44 -27.89 -0.15 -1.24 16 17 C -0.06 -0.80 5.13 -104.62 -0.54 -1.34 16 18 C -0.10 -1.25 9.70 -39.59 -0.38 -1.63 16 19 C -0.11 -1.26 9.83 -39.54 -0.39 -1.65 16 20 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 21 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.41 16 22 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 23 C -0.10 -1.28 9.70 -39.59 -0.38 -1.67 16 24 H 0.06 1.10 7.57 -51.93 -0.39 0.70 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.25 6.27 -51.93 -0.33 0.92 16 28 H 0.05 1.03 3.23 -51.93 -0.17 0.87 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.04 0.77 6.31 -51.93 -0.33 0.44 16 31 H 0.06 1.10 6.17 -51.93 -0.32 0.78 16 32 H 0.04 0.66 6.86 -51.93 -0.36 0.31 16 33 H 0.04 0.79 7.47 -51.93 -0.39 0.40 16 34 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 35 H 0.07 0.92 6.86 -51.93 -0.36 0.57 16 36 H 0.08 1.01 8.08 -51.92 -0.42 0.59 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -28.78 326.72 -8.95 -37.73 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.86 Total: 0.99 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -2.20 Total: -21.43 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.16 Total: -37.32 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.15 Total: 17.51 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.78 -8.95 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.433 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds