Wall clock time and date at job start Tue Mar 31 2020 05:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46954 * 2 1 4 4 H 1.08995 * 109.47118 * 303.04108 * 3 2 1 5 5 C 1.50702 * 109.47035 * 183.04544 * 3 2 1 6 6 H 1.08000 * 119.99774 * 240.00417 * 5 3 2 7 7 C 1.37879 * 119.99923 * 59.99619 * 5 3 2 8 8 N 1.31511 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99710 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47149 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47344 * 120.00177 * 9 7 5 12 12 H 1.48500 * 109.46912 * 239.99797 * 9 7 5 13 13 N 1.46894 * 109.47443 * 63.04334 * 3 2 1 14 14 C 1.46899 * 111.00043 * 64.50071 * 13 3 2 15 15 C 1.46901 * 111.00412 * 188.45473 * 13 3 2 16 16 C 1.52992 * 109.47163 * 164.09932 * 15 13 3 17 17 C 1.50700 * 109.47121 * 180.02562 * 16 15 13 18 18 C 1.38273 * 119.99398 * 269.72461 * 17 16 15 19 19 C 1.38213 * 120.02711 * 179.76481 * 18 17 16 20 20 C 1.38238 * 120.01286 * 0.51133 * 19 18 17 21 21 C 1.38329 * 119.98685 * 359.73981 * 20 19 18 22 22 Cl 1.73610 * 120.01329 * 180.02562 * 21 20 19 23 23 C 1.38190 * 119.99864 * 89.99884 * 17 16 15 24 24 H 1.09002 * 109.46986 * 174.80916 * 1 2 3 25 25 H 1.08999 * 109.46930 * 294.80747 * 1 2 3 26 26 H 1.08999 * 109.46825 * 54.81076 * 1 2 3 27 27 H 1.08999 * 109.47395 * 239.99744 * 2 1 3 28 28 H 1.08996 * 109.47243 * 119.99341 * 2 1 3 29 29 H 0.97000 * 119.99784 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47341 * 60.00420 * 14 13 3 31 31 H 1.09007 * 109.47489 * 180.02562 * 14 13 3 32 32 H 1.09002 * 109.47305 * 300.00103 * 14 13 3 33 33 H 1.09001 * 109.47296 * 284.10372 * 15 13 3 34 34 H 1.09000 * 109.46382 * 44.09875 * 15 13 3 35 35 H 1.09001 * 109.47665 * 299.99929 * 16 15 13 36 36 H 1.09000 * 109.47519 * 60.00639 * 16 15 13 37 37 H 1.07997 * 119.97983 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.99411 * 180.25652 * 19 18 17 39 39 H 1.08000 * 120.00591 * 179.72816 * 20 19 18 40 40 H 1.08007 * 120.00298 * 359.95710 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6328 1.9719 -0.8614 5 6 3.5451 1.4433 -0.0755 6 1 4.1252 1.8967 0.7147 7 6 4.1816 0.8649 -1.1532 8 7 3.4752 0.3131 -2.1155 9 14 6.0473 0.8651 -1.2464 10 1 6.6027 1.5429 -0.0474 11 1 6.5407 -0.5346 -1.2961 12 1 6.4817 1.5868 -2.4694 13 7 1.6113 2.1135 1.2344 14 6 2.2283 1.4912 2.4134 15 6 1.9078 3.5514 1.1824 16 6 1.1145 4.2754 2.2720 17 6 1.4182 5.7505 2.2182 18 6 2.4608 6.2693 2.9637 19 6 2.7429 7.6213 2.9112 20 6 1.9762 8.4574 2.1213 21 6 0.9297 7.9399 1.3793 22 17 -0.0333 8.9893 0.3866 23 6 0.6510 6.5855 1.4283 24 1 -0.3633 -1.0235 -0.0930 25 1 -0.3633 0.4312 0.9328 26 1 -0.3633 0.5922 -0.8399 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.9230 -0.0942 -2.8735 30 1 3.3132 1.5621 2.3358 31 1 1.8936 2.0069 3.3136 32 1 1.9355 0.4426 2.4658 33 1 2.9742 3.7086 1.3441 34 1 1.6264 3.9451 0.2057 35 1 0.0481 4.1183 2.1104 36 1 1.3959 3.8817 3.2487 37 1 3.0575 5.6170 3.5840 38 1 3.5600 8.0252 3.4905 39 1 2.1940 9.5146 2.0838 40 1 -0.1657 6.1808 0.8489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:41 Heat of formation + Delta-G solvation = 6.813381 kcal Electronic energy + Delta-G solvation = -19745.163000 eV Core-core repulsion = 16778.093222 eV Total energy + Delta-G solvation = -2967.069778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45533 -37.37275 -36.49364 -33.82469 -32.18403 -31.06635 -30.71629 -28.14053 -26.78202 -25.07651 -23.26195 -22.67509 -21.75824 -20.31995 -18.96693 -16.94953 -16.41315 -15.68067 -15.56344 -15.09094 -14.41641 -14.05020 -13.79094 -13.63157 -13.28263 -13.04877 -12.84400 -12.46331 -11.98613 -11.79666 -11.59594 -11.42575 -11.29506 -11.18929 -11.10867 -10.93852 -10.74982 -10.72668 -10.56285 -10.24465 -9.91711 -9.65205 -9.48171 -9.11347 -8.85962 -8.60432 -8.37475 -7.13892 -5.99418 -4.12537 1.15407 1.26629 2.08863 3.24611 3.33511 3.36063 3.61791 4.38743 4.69963 4.78900 5.01230 5.19950 5.26038 5.29718 5.40281 5.49385 5.74833 5.82278 5.94445 6.13989 6.18944 6.21179 6.27416 6.33448 6.41112 6.46179 6.56814 6.66632 6.69585 6.74123 6.80438 6.85016 7.11753 7.20085 7.35294 7.61496 7.76208 7.96923 8.15692 8.31083 8.46983 8.97513 9.55024 10.99942 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.004195 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.474266 B = 6672.446370 C = 7098.913260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.539 5.539 14 C 0.031 3.969 15 C 0.073 3.927 16 C -0.080 4.080 17 C -0.054 4.054 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.032 4.032 22 Cl -0.079 7.079 23 C -0.107 4.107 24 H 0.024 0.976 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 12.274 8.994 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.262 5.262 14 C -0.118 4.118 15 C -0.055 4.055 16 C -0.118 4.118 17 C -0.055 4.055 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.058 4.058 22 Cl -0.050 7.050 23 C -0.126 4.126 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.109 12.203 8.755 15.864 hybrid contribution 1.984 0.181 -0.372 2.027 sum -3.125 12.384 8.383 15.277 Atomic orbital electron populations 1.21694 0.98846 0.98322 1.00524 1.21596 0.92197 0.99157 1.01974 1.19312 0.92764 0.91056 0.86161 0.94492 1.21775 0.92778 1.37463 1.06126 0.92535 1.24902 0.97852 0.95063 0.95575 1.69882 1.34825 1.37875 1.09770 0.86649 0.86352 0.77718 0.77934 1.19992 1.20989 1.21018 1.62446 1.57859 1.01177 1.04715 1.22240 0.97896 0.99262 0.92408 1.21784 0.96956 0.89680 0.97126 1.20744 1.01862 0.88521 1.00687 1.20027 0.94308 0.96391 0.94744 1.21213 0.97200 0.95240 0.99482 1.21072 0.99234 0.93520 0.98690 1.20970 0.95168 1.00438 0.97666 1.20909 0.95844 0.91491 0.97563 1.98360 1.71078 1.66552 1.69026 1.21012 1.00924 0.91007 0.99657 0.95664 0.93545 0.94205 0.89061 0.94844 0.92957 0.95000 0.94207 0.92239 0.94792 0.91662 0.90399 0.91037 0.85485 0.85357 0.85387 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.72 37.16 0.36 -2.38 16 2 C -0.11 -2.59 5.08 -26.73 -0.14 -2.72 16 3 C 0.21 5.14 1.73 -68.86 -0.12 5.02 16 4 H 0.04 1.00 7.90 -51.93 -0.41 0.59 16 5 C -0.54 -14.25 7.27 -34.44 -0.25 -14.50 16 6 H 0.06 1.50 5.88 -52.49 -0.31 1.19 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.54 -10.91 4.14 -236.29 -0.98 -11.89 16 14 C 0.03 0.58 8.77 60.06 0.53 1.10 16 15 C 0.07 1.35 4.49 -3.83 -0.02 1.33 16 16 C -0.08 -1.16 5.39 -27.89 -0.15 -1.31 16 17 C -0.05 -0.72 5.13 -104.63 -0.54 -1.26 16 18 C -0.11 -1.38 9.70 -39.58 -0.38 -1.76 16 19 C -0.11 -1.16 10.05 -39.59 -0.40 -1.56 16 20 C -0.12 -1.39 9.83 -39.55 -0.39 -1.78 16 21 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 22 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 23 C -0.11 -1.41 9.49 -39.55 -0.38 -1.79 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.88 7.85 -51.93 -0.41 0.48 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 2.40 6.00 -51.93 -0.31 2.08 16 28 H 0.03 0.77 6.37 -51.93 -0.33 0.44 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.03 0.65 6.20 -51.93 -0.32 0.33 16 31 H 0.04 0.63 6.57 -51.93 -0.34 0.29 16 32 H 0.06 1.13 6.36 -51.93 -0.33 0.80 16 33 H 0.03 0.67 7.44 -51.93 -0.39 0.29 16 34 H 0.06 1.28 7.83 -51.93 -0.41 0.87 16 35 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.07 0.97 6.63 -51.93 -0.34 0.63 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -27.22 333.45 -10.05 -37.28 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.99 Total: 0.60 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.21 Total: -20.49 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.35 Total: -35.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.22 -10.05 -37.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.090 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds