Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46897 * 2 1 4 4 H 1.08997 * 109.47394 * 299.93210 * 3 2 1 5 5 C 1.53008 * 109.46729 * 179.97438 * 3 2 1 6 6 N 1.46899 * 109.47112 * 59.93558 * 3 2 1 7 7 C 1.46903 * 111.00125 * 38.90694 * 6 3 2 8 8 C 1.50701 * 109.47188 * 73.37279 * 7 6 3 9 9 H 1.08003 * 119.99413 * 3.70992 * 8 7 6 10 10 C 1.37876 * 120.00109 * 183.70192 * 8 7 6 11 11 N 1.31512 * 120.00005 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99835 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47175 * 89.99619 * 12 10 8 14 14 H 1.48500 * 109.47110 * 209.99496 * 12 10 8 15 15 H 1.48495 * 109.47332 * 329.99609 * 12 10 8 16 16 C 1.46896 * 110.99643 * 274.95594 * 6 3 2 17 17 C 1.50707 * 109.46957 * 286.64317 * 16 6 3 18 18 C 1.38236 * 119.98382 * 96.57045 * 17 16 6 19 19 C 1.38221 * 120.01128 * 180.27477 * 18 17 16 20 20 C 1.38355 * 119.98336 * 359.46887 * 19 18 17 21 21 Cl 1.73595 * 120.01030 * 180.23019 * 20 19 18 22 22 C 1.38352 * 119.97474 * 0.50901 * 20 19 18 23 23 C 1.38211 * 119.98559 * 359.74352 * 22 20 19 24 24 H 1.08999 * 109.47196 * 290.56005 * 1 2 3 25 25 H 1.09000 * 109.47277 * 50.56527 * 1 2 3 26 26 H 1.09004 * 109.47124 * 170.56693 * 1 2 3 27 27 H 1.08998 * 109.47092 * 239.99941 * 2 1 3 28 28 H 1.08999 * 109.46905 * 120.00194 * 2 1 3 29 29 H 1.08999 * 109.47209 * 309.26314 * 5 3 2 30 30 H 1.09001 * 109.47062 * 69.26312 * 5 3 2 31 31 H 1.09000 * 109.46783 * 189.26386 * 5 3 2 32 32 H 1.09001 * 109.46735 * 193.37334 * 7 6 3 33 33 H 1.08998 * 109.46873 * 313.37421 * 7 6 3 34 34 H 0.96995 * 120.00080 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47243 * 166.64845 * 16 6 3 36 36 H 1.09003 * 109.47549 * 46.64376 * 16 6 3 37 37 H 1.08003 * 120.00054 * 359.97438 * 18 17 16 38 38 H 1.07996 * 120.00435 * 179.69294 * 19 18 17 39 39 H 1.07996 * 120.00880 * 179.72765 * 22 20 19 40 40 H 1.08006 * 119.99393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6776 1.9560 -0.8906 5 6 3.5700 1.4425 0.0006 6 7 1.5490 2.1354 1.1986 7 6 1.5725 1.2461 2.3676 8 6 2.9963 1.0489 2.8203 9 1 3.7974 1.5824 2.3304 10 6 3.2762 0.1876 3.8599 11 7 4.5188 0.0152 4.2546 12 14 1.8905 -0.7355 4.7068 13 1 1.6677 -2.0331 4.0199 14 1 2.2546 -0.9823 6.1252 15 1 0.6477 0.0751 4.6487 16 6 0.2023 2.6791 0.9778 17 6 0.2881 3.8813 0.0730 18 6 0.0623 3.7422 -1.2837 19 6 0.1464 4.8434 -2.1150 20 6 0.4458 6.0868 -1.5873 21 17 0.5457 7.4713 -2.6297 22 6 0.6711 6.2253 -0.2293 23 6 0.5919 5.1226 0.6001 24 1 -0.3633 0.3609 0.9622 25 1 -0.3634 0.6528 -0.7937 26 1 -0.3633 -1.0138 -0.1684 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9330 0.7922 0.7965 30 1 3.9337 1.0785 -0.9602 31 1 3.9332 2.4568 0.1661 32 1 0.9928 1.6926 3.1755 33 1 1.1397 0.2823 2.0996 34 1 4.7157 -0.5905 4.9862 35 1 -0.2317 2.9738 1.9333 36 1 -0.4250 1.9185 0.5130 37 1 -0.1750 2.7722 -1.6951 38 1 -0.0251 4.7337 -3.1756 39 1 0.9092 7.1949 0.1826 40 1 0.7674 5.2306 1.6603 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257443024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = 31.627726 kcal Electronic energy + Delta-G solvation = -20436.742143 eV Core-core repulsion = 17470.748396 eV Total energy + Delta-G solvation = -2965.993747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.66573 -38.11002 -36.41932 -32.69078 -32.49241 -31.01798 -30.64946 -29.62712 -27.69677 -24.70007 -22.94041 -22.82832 -21.71283 -20.92736 -18.81045 -17.12197 -16.73065 -15.90417 -15.41716 -15.28843 -14.49881 -14.23220 -13.82398 -13.49843 -13.34275 -13.23249 -12.75376 -12.58957 -12.24939 -11.98379 -11.70369 -11.53936 -11.49316 -11.33558 -11.16591 -10.99212 -10.81301 -10.65794 -10.41609 -10.27517 -10.14365 -9.98257 -9.65594 -9.01673 -8.92060 -8.55046 -8.46966 -7.24886 -6.04001 -3.99410 1.23485 1.38325 2.13861 3.25187 3.34359 3.35263 3.70374 4.41107 4.77058 4.88319 4.92934 5.07536 5.26678 5.37656 5.39393 5.44273 5.55648 5.60476 5.72811 5.75880 5.93302 6.00872 6.06631 6.15254 6.26929 6.29089 6.33141 6.35741 6.48813 6.61069 6.63753 6.75808 6.86457 6.90431 6.95474 7.07876 7.39327 7.67345 7.93411 8.08470 8.68391 9.08090 9.57998 11.08308 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.004386 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.520199 B = 6382.244111 C = 6619.105481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.160 4.160 3 C 0.095 3.905 4 H 0.059 0.941 5 C -0.145 4.145 6 N -0.512 5.512 7 C 0.150 3.850 8 C -0.504 4.504 9 H 0.093 0.907 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.867 3.133 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.269 1.269 16 C 0.061 3.939 17 C -0.052 4.052 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.042 4.042 21 Cl -0.085 7.085 22 C -0.112 4.112 23 C -0.085 4.085 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.006 0.994 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 7.670 -11.558 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C -0.013 4.013 4 H 0.077 0.923 5 C -0.202 4.202 6 N -0.235 5.235 7 C 0.024 3.976 8 C -0.542 4.542 9 H 0.111 0.889 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.694 3.306 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.193 1.193 16 C -0.066 4.066 17 C -0.053 4.053 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.069 4.069 21 Cl -0.056 7.056 22 C -0.131 4.131 23 C -0.103 4.103 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.023 0.977 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.898 8.080 -11.400 17.124 hybrid contribution -1.151 -1.083 0.294 1.608 sum -11.049 6.996 -11.107 17.158 Atomic orbital electron populations 1.22121 0.97334 1.00651 1.01330 1.22251 0.94805 0.99697 1.03077 1.21508 0.96424 0.91193 0.92192 0.92297 1.22054 0.94251 1.02955 1.00977 1.62240 1.19149 1.37733 1.04395 1.20472 0.98889 0.90608 0.87625 1.21235 0.91903 1.24897 1.16183 0.88941 1.24887 0.94980 0.96705 0.96710 1.69879 1.17905 1.37608 1.28596 0.86996 0.83478 0.80705 0.79384 1.20418 1.21323 1.19339 1.21605 0.93155 0.93654 0.98206 1.20105 0.95896 0.95376 0.93891 1.21030 1.00359 0.98047 0.93045 1.20940 1.01118 0.90952 1.00200 1.20853 1.06328 0.88302 0.91408 1.98346 1.96953 1.43054 1.67274 1.21035 1.00790 0.99858 0.91386 1.21064 0.97547 0.91325 1.00396 0.92004 0.93305 0.93478 0.92728 0.89216 0.88743 0.95017 0.92958 0.96188 0.97697 0.92768 0.90563 0.92308 0.85594 0.85473 0.85310 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 7.92 37.16 0.29 -2.00 16 2 C -0.16 -2.71 4.86 -26.73 -0.13 -2.84 16 3 C 0.10 1.69 2.43 -67.71 -0.16 1.53 16 4 H 0.06 0.95 5.73 -51.93 -0.30 0.66 16 5 C -0.15 -2.80 8.19 37.16 0.30 -2.49 16 6 N -0.51 -9.74 4.31 -229.51 -0.99 -10.73 16 7 C 0.15 3.33 2.92 -4.97 -0.01 3.32 16 8 C -0.50 -13.29 7.78 -34.44 -0.27 -13.56 16 9 H 0.09 2.65 5.93 -52.48 -0.31 2.34 16 10 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 11 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 12 Si 0.87 20.69 27.40 -169.99 -4.66 16.03 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.16 6.65 56.52 0.38 -5.78 16 16 C 0.06 0.96 4.57 -4.97 -0.02 0.94 16 17 C -0.05 -0.74 5.01 -104.62 -0.52 -1.26 16 18 C -0.11 -1.35 8.28 -39.59 -0.33 -1.67 16 19 C -0.11 -1.36 9.83 -39.54 -0.39 -1.75 16 20 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 21 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 22 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 23 C -0.08 -1.16 9.73 -39.59 -0.39 -1.55 16 24 H 0.06 0.96 4.96 -51.93 -0.26 0.70 16 25 H 0.05 0.62 7.07 -51.93 -0.37 0.25 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.81 5.95 -51.93 -0.31 1.50 16 29 H 0.09 2.14 5.46 -51.93 -0.28 1.86 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.46 7.00 -51.93 -0.36 0.10 16 33 H 0.01 0.12 3.42 -51.93 -0.18 -0.06 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.08 1.19 7.66 -51.93 -0.40 0.79 16 36 H 0.06 0.85 3.75 -51.93 -0.19 0.66 16 37 H 0.13 1.43 7.43 -52.48 -0.39 1.04 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -27.99 318.02 -9.41 -37.40 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.47 Total: 2.95 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.36 Total: -22.14 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.22 Total: -36.58 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.66 Total: 16.03 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.99 -9.41 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257443024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.027 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds