Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46897 * 2 1 4 4 H 1.08997 * 109.47394 * 299.93210 * 3 2 1 5 5 C 1.53008 * 109.46729 * 179.97438 * 3 2 1 6 6 N 1.46899 * 109.47112 * 59.93558 * 3 2 1 7 7 C 1.46903 * 111.00125 * 38.90694 * 6 3 2 8 8 C 1.50701 * 109.47188 * 73.37279 * 7 6 3 9 9 H 1.08003 * 119.99413 * 3.70992 * 8 7 6 10 10 C 1.37876 * 120.00109 * 183.70192 * 8 7 6 11 11 N 1.31512 * 120.00005 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99835 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47175 * 89.99619 * 12 10 8 14 14 H 1.48500 * 109.47110 * 209.99496 * 12 10 8 15 15 H 1.48495 * 109.47332 * 329.99609 * 12 10 8 16 16 C 1.46896 * 110.99643 * 274.95594 * 6 3 2 17 17 C 1.50707 * 109.46957 * 286.64317 * 16 6 3 18 18 C 1.38236 * 119.98382 * 96.57045 * 17 16 6 19 19 C 1.38221 * 120.01128 * 180.27477 * 18 17 16 20 20 C 1.38355 * 119.98336 * 359.46887 * 19 18 17 21 21 Cl 1.73595 * 120.01030 * 180.23019 * 20 19 18 22 22 C 1.38352 * 119.97474 * 0.50901 * 20 19 18 23 23 C 1.38211 * 119.98559 * 359.74352 * 22 20 19 24 24 H 1.08999 * 109.47196 * 290.56005 * 1 2 3 25 25 H 1.09000 * 109.47277 * 50.56527 * 1 2 3 26 26 H 1.09004 * 109.47124 * 170.56693 * 1 2 3 27 27 H 1.08998 * 109.47092 * 239.99941 * 2 1 3 28 28 H 1.08999 * 109.46905 * 120.00194 * 2 1 3 29 29 H 1.08999 * 109.47209 * 309.26314 * 5 3 2 30 30 H 1.09001 * 109.47062 * 69.26312 * 5 3 2 31 31 H 1.09000 * 109.46783 * 189.26386 * 5 3 2 32 32 H 1.09001 * 109.46735 * 193.37334 * 7 6 3 33 33 H 1.08998 * 109.46873 * 313.37421 * 7 6 3 34 34 H 0.96995 * 120.00080 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47243 * 166.64845 * 16 6 3 36 36 H 1.09003 * 109.47549 * 46.64376 * 16 6 3 37 37 H 1.08003 * 120.00054 * 359.97438 * 18 17 16 38 38 H 1.07996 * 120.00435 * 179.69294 * 19 18 17 39 39 H 1.07996 * 120.00880 * 179.72765 * 22 20 19 40 40 H 1.08006 * 119.99393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6776 1.9560 -0.8906 5 6 3.5700 1.4425 0.0006 6 7 1.5490 2.1354 1.1986 7 6 1.5725 1.2461 2.3676 8 6 2.9963 1.0489 2.8203 9 1 3.7974 1.5824 2.3304 10 6 3.2762 0.1876 3.8599 11 7 4.5188 0.0152 4.2546 12 14 1.8905 -0.7355 4.7068 13 1 1.6677 -2.0331 4.0199 14 1 2.2546 -0.9823 6.1252 15 1 0.6477 0.0751 4.6487 16 6 0.2023 2.6791 0.9778 17 6 0.2881 3.8813 0.0730 18 6 0.0623 3.7422 -1.2837 19 6 0.1464 4.8434 -2.1150 20 6 0.4458 6.0868 -1.5873 21 17 0.5457 7.4713 -2.6297 22 6 0.6711 6.2253 -0.2293 23 6 0.5919 5.1226 0.6001 24 1 -0.3633 0.3609 0.9622 25 1 -0.3634 0.6528 -0.7937 26 1 -0.3633 -1.0138 -0.1684 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9330 0.7922 0.7965 30 1 3.9337 1.0785 -0.9602 31 1 3.9332 2.4568 0.1661 32 1 0.9928 1.6926 3.1755 33 1 1.1397 0.2823 2.0996 34 1 4.7157 -0.5905 4.9862 35 1 -0.2317 2.9738 1.9333 36 1 -0.4250 1.9185 0.5130 37 1 -0.1750 2.7722 -1.6951 38 1 -0.0251 4.7337 -3.1756 39 1 0.9092 7.1949 0.1826 40 1 0.7674 5.2306 1.6603 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257443024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = 16.467974 kcal Electronic energy + Delta-G solvation = -20437.399519 eV Core-core repulsion = 17470.748396 eV Total energy + Delta-G solvation = -2966.651124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83022 -39.37099 -37.36379 -34.69022 -33.73491 -32.16486 -31.88465 -31.05137 -29.36680 -26.07988 -24.36412 -23.85991 -23.32429 -22.02195 -20.30388 -18.89862 -17.93372 -17.33350 -16.67913 -16.40920 -16.00826 -15.81319 -15.11368 -14.56800 -14.53971 -14.32865 -14.31830 -14.06192 -13.60294 -13.42530 -13.23795 -12.99153 -12.81367 -12.59572 -12.52738 -12.30375 -12.16991 -11.87074 -11.85763 -11.68049 -11.65293 -11.52659 -11.27791 -10.92080 -10.64283 -9.90747 -9.49711 -8.72056 -8.16584 -6.15096 0.22582 0.41483 1.20045 1.35498 1.38402 1.47005 2.40283 2.67453 3.16663 3.44495 3.86862 3.94492 4.03476 4.08007 4.26203 4.30539 4.38862 4.45452 4.62409 4.66850 4.71298 4.82603 4.85506 4.89697 4.95600 5.03501 5.07346 5.12736 5.21020 5.29630 5.31573 5.33108 5.36635 5.55757 5.67344 5.73401 5.76602 5.91501 6.17541 6.57073 6.80482 6.93071 7.46027 8.99075 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.004386 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.520199 B = 6382.244111 C = 6619.105481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.097 3.903 4 H 0.085 0.915 5 C -0.138 4.138 6 N -0.528 5.528 7 C 0.160 3.840 8 C -0.495 4.495 9 H 0.056 0.944 10 C 0.008 3.992 11 N -0.952 5.952 12 Si 0.930 3.070 13 H -0.270 1.270 14 H -0.291 1.291 15 H -0.250 1.250 16 C 0.065 3.935 17 C -0.067 4.067 18 C -0.104 4.104 19 C -0.112 4.112 20 C -0.048 4.048 21 Cl -0.075 7.075 22 C -0.116 4.116 23 C -0.098 4.098 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.015 0.985 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 7.767 -13.553 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C -0.011 4.011 4 H 0.102 0.898 5 C -0.196 4.196 6 N -0.251 5.251 7 C 0.034 3.966 8 C -0.534 4.534 9 H 0.074 0.926 10 C -0.188 4.188 11 N -0.594 5.594 12 Si 0.755 3.245 13 H -0.195 1.195 14 H -0.217 1.217 15 H -0.174 1.174 16 C -0.062 4.062 17 C -0.068 4.068 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.075 4.075 21 Cl -0.047 7.047 22 C -0.135 4.135 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.509 8.195 -13.416 20.090 hybrid contribution -0.275 -0.986 0.796 1.296 sum -12.784 7.209 -12.620 19.356 Atomic orbital electron populations 1.22077 0.95009 1.02282 1.01667 1.22168 0.96850 0.98526 1.02048 1.21534 0.94917 0.92180 0.92484 0.89751 1.21933 0.96092 1.00917 1.00647 1.62060 1.21933 1.37169 1.03981 1.20213 0.95744 0.91735 0.88940 1.21495 0.93410 1.23306 1.15174 0.92553 1.25689 0.97219 0.98071 0.97807 1.70042 1.20355 1.39254 1.29770 0.85967 0.80973 0.79757 0.77811 1.19519 1.21700 1.17359 1.21612 0.91264 0.94567 0.98784 1.20032 0.97475 0.94728 0.94529 1.21208 0.99680 0.99173 0.92244 1.21210 1.00083 0.90411 1.01303 1.21023 1.05920 0.89026 0.91511 1.98352 1.96877 1.42585 1.66838 1.21173 1.00556 1.00103 0.91640 1.21123 0.98221 0.91910 1.00463 0.93108 0.90721 0.91995 0.91043 0.93009 0.92916 0.92568 0.94597 0.96704 0.96697 0.92982 0.91008 0.90439 0.83674 0.83233 0.84128 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 7.92 71.98 0.57 -3.35 16 2 C -0.16 -5.02 4.86 30.59 0.15 -4.88 16 3 C 0.10 3.30 2.43 44.92 0.11 3.41 16 4 H 0.08 2.46 5.73 -2.39 -0.01 2.45 16 5 C -0.14 -5.40 8.19 71.98 0.59 -4.81 16 6 N -0.53 -19.71 4.31 -880.04 -3.79 -23.50 16 7 C 0.16 7.10 2.92 85.56 0.25 7.35 16 8 C -0.50 -27.01 7.78 25.60 0.20 -26.81 16 9 H 0.06 3.42 5.93 -2.91 -0.02 3.41 16 10 C 0.01 0.47 5.47 84.65 0.46 0.93 16 11 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 12 Si 0.93 43.07 27.40 68.60 1.88 44.95 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 15 H -0.25 -10.71 6.65 99.48 0.66 -10.05 16 16 C 0.06 1.90 4.57 85.56 0.39 2.29 16 17 C -0.07 -1.76 5.01 -19.86 -0.10 -1.86 16 18 C -0.10 -2.29 8.28 22.27 0.18 -2.11 16 19 C -0.11 -2.31 9.83 22.29 0.22 -2.09 16 20 C -0.05 -1.08 6.32 22.32 0.14 -0.94 16 21 Cl -0.08 -1.53 28.96 -2.72 -0.08 -1.61 16 22 C -0.12 -2.74 9.83 22.29 0.22 -2.53 16 23 C -0.10 -2.60 9.73 22.26 0.22 -2.38 16 24 H 0.05 1.42 4.96 -2.39 -0.01 1.41 16 25 H 0.07 1.53 7.07 -2.39 -0.02 1.51 16 26 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.06 5.95 -2.39 -0.01 2.04 16 29 H 0.05 2.50 5.46 -2.39 -0.01 2.49 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.01 0.68 7.00 -2.39 -0.02 0.66 16 33 H 0.02 0.66 3.42 -2.39 -0.01 0.65 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.07 2.15 7.66 -2.39 -0.02 2.13 16 36 H 0.08 1.99 3.75 -2.39 -0.01 1.98 16 37 H 0.15 2.59 7.43 -2.91 -0.02 2.57 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -62.41 318.02 2.90 -59.50 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.00 Total: 16.79 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.60 Total: -37.77 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.50 Total: -81.87 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -62.41 2.90 -59.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257443024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.973 kcal (2) G-P(sol) polarization free energy of solvation -62.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds