Wall clock time and date at job start Tue Mar 31 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47346 * 2 1 4 4 C 1.53001 * 109.47204 * 120.00389 * 2 1 3 5 5 C 1.52999 * 109.47090 * 185.00196 * 4 2 1 6 6 N 1.46500 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00201 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.47995 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.39903 * 120.94601 * 0.23534 * 9 7 6 11 11 C 1.38041 * 119.03426 * 180.27832 * 10 9 7 12 12 N 1.31859 * 120.98258 * 359.72512 * 11 10 9 13 13 C 1.31716 * 122.09710 * 0.02562 * 12 11 10 14 14 C 1.38538 * 120.84601 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.53935 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47452 * 240.00351 * 2 1 3 17 17 C 1.36935 * 119.99952 * 84.99919 * 16 2 1 18 18 H 1.07997 * 120.00128 * 0.02562 * 17 16 2 19 19 C 1.38811 * 119.99983 * 180.02562 * 17 16 2 20 20 N 1.31621 * 119.99975 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00295 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47002 * 59.99389 * 21 19 17 23 23 H 1.48501 * 109.47309 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46908 * 299.99455 * 21 19 17 25 25 H 1.08998 * 109.47144 * 299.99851 * 1 2 3 26 26 H 1.09003 * 109.47179 * 59.99875 * 1 2 3 27 27 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47038 * 64.99820 * 4 2 1 29 29 H 1.09005 * 109.46976 * 305.00051 * 4 2 1 30 30 H 1.08994 * 109.47487 * 59.99900 * 5 4 2 31 31 H 1.08999 * 109.46833 * 299.99422 * 5 4 2 32 32 H 0.97008 * 119.99993 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.48201 * 0.02562 * 10 9 7 34 34 H 1.08005 * 119.50718 * 179.75268 * 11 10 9 35 35 H 1.07998 * 119.58275 * 180.02562 * 13 12 11 36 36 H 0.96995 * 120.00004 * 265.00308 * 16 2 1 37 37 H 0.97001 * 119.99793 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0531 -1.3035 2.5101 7 6 5.3739 -1.3387 2.7759 8 8 6.1599 -0.7984 2.0228 9 6 5.8672 -2.0364 3.9843 10 6 4.9804 -2.6701 4.8614 11 6 5.4829 -3.3043 5.9799 12 7 6.7785 -3.3234 6.2247 13 6 7.6505 -2.7448 5.4249 14 6 7.2352 -2.0844 4.2801 15 9 8.1351 -1.4927 3.4643 16 7 2.0183 -0.6905 -1.1962 17 6 2.1491 -0.0073 -2.3757 18 1 1.8927 1.0406 -2.4241 19 6 2.6114 -0.6617 -3.5092 20 7 2.9245 -1.9388 -3.4502 21 14 2.7906 0.2704 -5.1182 22 1 3.7465 1.3922 -4.9365 23 1 3.2995 -0.6480 -6.1683 24 1 1.4686 0.8081 -5.5285 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7715 1.2055 29 1 1.6053 -0.2619 2.1370 30 1 3.8531 0.4369 1.3574 31 1 3.9994 -1.0728 0.4259 32 1 3.4256 -1.7345 3.1114 33 1 3.9178 -2.6598 4.6685 34 1 4.8049 -3.7925 6.6643 35 1 8.7028 -2.7858 5.6645 36 1 2.2490 -1.6316 -1.1527 37 1 3.2479 -2.3960 -4.2422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317390951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:03 Heat of formation + Delta-G solvation = -37.007075 kcal Electronic energy + Delta-G solvation = -21147.412539 eV Core-core repulsion = 17646.565845 eV Total energy + Delta-G solvation = -3500.846694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.14111 -40.69874 -39.21159 -36.65236 -34.58413 -33.14311 -32.17659 -31.27844 -29.34866 -28.16360 -25.39983 -24.05229 -23.66329 -22.52527 -20.99691 -19.88110 -18.50402 -17.60269 -17.52309 -17.19079 -16.19564 -15.85526 -15.46925 -15.31957 -14.75800 -14.73240 -14.05050 -14.01544 -13.73517 -13.58214 -13.52032 -13.02095 -12.55660 -12.46719 -12.08147 -11.58997 -11.17008 -10.95217 -10.76556 -10.68943 -10.53250 -10.31454 -10.29802 -10.02866 -9.76802 -9.64517 -9.39271 -9.00623 -8.88841 -6.96754 -5.75631 -3.04706 0.20854 0.47517 2.68069 2.94141 3.36565 3.45802 3.50560 3.51135 3.58702 3.98153 4.18618 4.26736 4.39271 4.60539 4.89083 5.14741 5.24911 5.32720 5.33296 5.35453 5.53154 5.63276 5.82633 6.00646 6.09582 6.13169 6.26705 6.33574 6.37955 6.55713 6.64590 6.82795 7.02899 7.30935 7.40212 7.70990 8.09853 8.42612 9.54027 10.09903 10.44366 11.46879 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.003492 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.514561 B = 8016.417738 C = 8822.805145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.717 5.717 7 C 0.549 3.451 8 O -0.511 6.511 9 C -0.121 4.121 10 C -0.113 4.113 11 C 0.082 3.918 12 N -0.444 5.444 13 C 0.070 3.930 14 C 0.106 3.894 15 F -0.104 7.104 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.383 0.617 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.296 -2.438 21.434 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.368 5.368 7 C 0.333 3.667 8 O -0.386 6.386 9 C -0.133 4.133 10 C -0.133 4.133 11 C -0.074 4.074 12 N -0.153 5.153 13 C -0.089 4.089 14 C 0.083 3.917 15 F -0.082 7.082 16 N -0.366 5.366 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.192 0.808 36 H 0.217 0.783 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.201 -2.307 21.402 21.762 hybrid contribution -0.398 0.424 -1.582 1.685 sum 2.803 -1.883 19.820 20.105 Atomic orbital electron populations 1.22425 0.99068 1.00854 1.00015 1.20147 0.91931 0.95592 0.85934 0.93235 1.22075 0.93572 1.01942 0.99551 1.21562 0.94657 0.97301 0.86600 1.45991 1.06430 1.56710 1.27713 1.17885 0.83209 0.80940 0.84663 1.90897 1.55066 1.44439 1.48198 1.20757 0.93063 1.01596 0.97902 1.22362 1.01005 0.95865 0.94098 1.22815 0.91784 0.97016 0.95811 1.67585 1.03434 1.15084 1.29159 1.23000 1.01187 0.95083 0.89644 1.18943 0.86390 0.95572 0.90827 1.91643 1.65381 1.80490 1.70662 1.42445 1.78133 1.10644 1.05365 1.19171 1.36805 0.93829 0.87338 0.91242 1.24725 1.02037 0.95948 0.98061 1.69642 1.50757 1.08679 1.29009 0.86290 0.77732 0.78687 0.83616 1.21219 1.21729 1.21338 0.94557 0.92670 0.93509 0.91485 0.91812 0.91400 0.89304 0.76951 0.83268 0.81244 0.80823 0.78296 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.49 37.15 0.35 -2.41 16 2 C 0.17 3.23 2.89 -67.93 -0.20 3.04 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.90 4.87 -26.73 -0.13 -2.03 16 5 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 6 N -0.72 -9.16 5.51 -61.20 -0.34 -9.49 16 7 C 0.55 8.24 7.79 -12.26 -0.10 8.15 16 8 O -0.51 -10.16 15.48 5.34 0.08 -10.07 16 9 C -0.12 -1.41 5.91 -104.60 -0.62 -2.03 16 10 C -0.11 -0.87 9.61 -39.03 -0.38 -1.24 16 11 C 0.08 0.59 11.17 -17.61 -0.20 0.39 16 12 N -0.44 -4.09 10.33 -13.24 -0.14 -4.22 16 13 C 0.07 0.65 11.17 -17.49 -0.20 0.46 16 14 C 0.11 1.26 7.33 -38.79 -0.28 0.97 16 15 F -0.10 -1.50 15.72 2.25 0.04 -1.46 16 16 N -0.72 -17.45 4.57 -53.43 -0.24 -17.70 16 17 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 32 H 0.40 3.48 6.61 -40.82 -0.27 3.21 16 33 H 0.15 0.67 6.54 -52.49 -0.34 0.33 16 34 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -34.24 324.66 -6.70 -40.93 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.68 Total: 6.97 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.01 Total: 0.04 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.01 Total: -58.85 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.24 -6.70 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317390951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.925 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds