Wall clock time and date at job start Tue Mar 31 2020 05:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 H 1.08998 * 109.46971 * 305.78447 * 3 2 1 5 5 C 1.50699 * 109.47123 * 185.78564 * 3 2 1 6 6 H 1.08004 * 119.99844 * 245.25561 * 5 3 2 7 7 C 1.37878 * 120.00246 * 65.25897 * 5 3 2 8 8 N 1.31508 * 120.00647 * 186.12869 * 7 5 3 9 9 Si 1.86806 * 119.99830 * 6.13282 * 7 5 3 10 10 H 1.48498 * 109.46721 * 270.00010 * 9 7 5 11 11 H 1.48500 * 109.47094 * 29.99898 * 9 7 5 12 12 H 1.48501 * 109.47244 * 149.99772 * 9 7 5 13 13 N 1.46504 * 109.47226 * 65.78627 * 3 2 1 14 14 C 1.34773 * 119.99519 * 275.00110 * 13 3 2 15 15 O 1.21588 * 120.00804 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99581 * 179.97438 * 14 13 3 17 17 C 1.40056 * 120.00115 * 184.89104 * 16 14 13 18 18 C 1.38876 * 120.01338 * 144.41989 * 17 16 14 19 19 C 1.38204 * 120.09013 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.11594 * 0.02562 * 19 18 17 21 21 F 1.35099 * 119.98664 * 180.02562 * 20 19 18 22 22 C 1.39097 * 120.03051 * 359.97438 * 20 19 18 23 23 N 1.39835 * 120.04878 * 180.02562 * 22 20 19 24 24 C 1.38739 * 120.01078 * 324.15134 * 17 16 14 25 25 H 1.09001 * 109.47404 * 59.99961 * 1 2 3 26 26 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47061 * 300.00074 * 1 2 3 28 28 H 1.08996 * 109.47239 * 239.99762 * 2 1 3 29 29 H 1.09001 * 109.47404 * 120.00039 * 2 1 3 30 30 H 0.97007 * 119.99526 * 354.97847 * 8 7 5 31 31 H 0.96993 * 120.00056 * 94.99697 * 13 3 2 32 32 H 0.97002 * 120.00252 * 4.89220 * 16 14 13 33 33 H 1.08003 * 119.95802 * 0.02562 * 18 17 16 34 34 H 1.08005 * 119.94332 * 180.02562 * 19 18 17 35 35 H 0.97002 * 119.99474 * 359.97438 * 23 22 20 36 36 H 0.97000 * 119.99880 * 180.02562 * 23 22 20 37 37 H 1.07997 * 120.06238 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5946 1.9853 -0.8337 5 6 3.5402 1.4448 -0.1432 6 1 4.1591 1.8084 0.6638 7 6 4.1226 0.9829 -1.3044 8 7 5.4305 0.8716 -1.3851 9 14 3.0539 0.5152 -2.7635 10 1 2.6886 -0.9210 -2.6691 11 1 1.8198 1.3413 -2.7580 12 1 3.8036 0.7537 -4.0229 13 7 1.6687 2.0917 1.2597 14 6 0.4530 2.6581 1.3931 15 8 -0.3358 2.6298 0.4682 16 7 0.1113 3.2549 2.5522 17 6 -1.1860 3.7529 2.7276 18 6 -1.7950 3.6813 3.9736 19 6 -3.0748 4.1726 4.1486 20 6 -3.7533 4.7365 3.0836 21 9 -5.0041 5.2164 3.2577 22 6 -3.1480 4.8107 1.8334 23 7 -3.8335 5.3813 0.7564 24 6 -1.8610 4.3228 1.6579 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.9895 1.1823 -0.6557 31 1 2.2977 2.1140 1.9977 32 1 0.7637 3.3397 3.2650 33 1 -1.2674 3.2418 4.8073 34 1 -3.5460 4.1161 5.1188 35 1 -4.7318 5.7253 0.8808 36 1 -3.4108 5.4323 -0.1152 37 1 -1.3870 4.3835 0.6894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325640721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:49 Heat of formation + Delta-G solvation = -51.475422 kcal Electronic energy + Delta-G solvation = -21897.960393 eV Core-core repulsion = 18396.486304 eV Total energy + Delta-G solvation = -3501.474089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.72660 -40.36049 -38.62942 -35.88274 -34.89287 -33.64948 -32.47313 -31.44690 -29.40722 -28.32911 -27.02102 -23.31657 -22.49982 -22.09033 -20.90115 -19.79126 -18.65806 -17.88536 -17.53162 -17.15939 -16.75605 -15.61848 -15.55924 -15.32316 -14.90677 -14.74617 -14.07311 -13.59452 -13.38228 -13.21147 -12.97688 -12.68315 -12.58613 -12.50116 -12.28319 -11.88483 -11.37263 -11.01356 -10.95791 -10.72362 -10.49752 -9.92160 -9.80205 -9.66979 -9.52634 -8.91666 -8.57868 -8.28250 -8.02398 -7.51440 -6.59596 -4.27781 1.25361 1.44576 3.00591 3.33930 3.43242 3.48548 3.56812 3.72193 3.88533 4.36325 4.37810 4.71615 4.80523 5.16344 5.16884 5.37949 5.53311 5.71678 6.02123 6.06135 6.13330 6.18338 6.23570 6.38996 6.45491 6.64685 6.73915 6.85227 6.95563 6.99865 7.13579 7.33783 7.36161 7.44432 7.62878 7.70953 8.19546 8.55600 8.68646 9.06267 9.43093 10.81145 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.031726 B = 0.004004 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.332085 B = 6990.813942 C = 7297.492055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.258 3.742 4 H 0.050 0.950 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.904 5.904 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.711 5.711 14 C 0.693 3.307 15 O -0.576 6.576 16 N -0.695 5.695 17 C 0.218 3.782 18 C -0.185 4.185 19 C -0.086 4.086 20 C -0.014 4.014 21 F -0.150 7.150 22 C 0.208 3.792 23 N -0.872 5.872 24 C -0.176 4.176 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.269 0.731 31 H 0.390 0.610 32 H 0.405 0.595 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.399 0.601 36 H 0.404 0.596 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 6.769 9.642 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.154 3.846 4 H 0.068 0.932 5 C -0.649 4.649 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.538 5.538 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.362 5.362 14 C 0.394 3.606 15 O -0.454 6.454 16 N -0.342 5.342 17 C 0.120 3.880 18 C -0.208 4.208 19 C -0.106 4.106 20 C -0.038 4.038 21 F -0.130 7.130 22 C 0.101 3.899 23 N -0.411 5.411 24 C -0.201 4.201 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.223 0.777 32 H 0.240 0.760 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.228 0.772 36 H 0.233 0.767 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.546 6.031 7.213 18.168 hybrid contribution 0.287 0.807 2.127 2.293 sum -15.258 6.838 9.340 19.152 Atomic orbital electron populations 1.21875 0.97021 0.98899 1.02258 1.22271 0.94134 0.99946 1.01308 1.19181 0.95761 0.88300 0.81328 0.93239 1.22170 0.89692 1.48709 1.04286 0.92000 1.25694 0.97555 0.93634 1.00045 1.70836 1.04081 1.42540 1.36300 0.83953 0.75316 0.77232 0.75801 1.20672 1.19807 1.21400 1.45548 1.13193 1.58573 1.18898 1.16110 0.83584 0.78658 0.82248 1.90881 1.50924 1.64718 1.38879 1.42840 1.11705 1.61495 1.18208 1.17223 0.84549 0.92761 0.93452 1.20483 0.95506 1.07771 0.97015 1.20591 0.94430 0.97878 0.97707 1.17056 0.82346 1.10480 0.93940 1.91396 1.38505 1.87063 1.95987 1.17576 0.91865 0.93661 0.86789 1.42339 1.19501 1.68945 1.10364 1.20682 0.93826 1.04145 1.01456 0.92917 0.95097 0.93037 0.92234 0.92764 0.92123 0.77711 0.75983 0.85264 0.84822 0.77219 0.76705 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.53 37.16 0.32 -2.54 16 2 C -0.14 -2.99 5.20 -26.73 -0.14 -3.13 16 3 C 0.26 5.95 1.81 -69.08 -0.13 5.83 16 4 H 0.05 1.26 6.06 -51.93 -0.31 0.95 16 5 C -0.61 -16.06 9.09 -34.44 -0.31 -16.37 16 6 H 0.06 1.70 7.95 -52.48 -0.42 1.28 16 7 C 0.04 1.01 5.43 -17.82 -0.10 0.92 16 8 N -0.90 -26.65 13.70 55.43 0.76 -25.89 16 9 Si 1.05 24.98 25.36 -169.99 -4.31 20.67 16 10 H -0.28 -6.34 6.76 56.52 0.38 -5.96 16 11 H -0.27 -6.27 6.36 56.52 0.36 -5.91 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.71 -13.58 5.03 -59.81 -0.30 -13.88 16 14 C 0.69 12.59 7.01 -86.92 -0.61 11.98 16 15 O -0.58 -12.07 10.95 5.29 0.06 -12.02 16 16 N -0.69 -9.67 5.34 -14.22 -0.08 -9.74 16 17 C 0.22 3.01 6.29 -83.68 -0.53 2.49 16 18 C -0.18 -2.11 9.96 -39.36 -0.39 -2.50 16 19 C -0.09 -0.96 10.01 -39.57 -0.40 -1.36 16 20 C -0.01 -0.17 7.31 -39.24 -0.29 -0.46 16 21 F -0.15 -1.89 16.63 2.25 0.04 -1.85 16 22 C 0.21 2.73 6.76 -83.70 -0.57 2.16 16 23 N -0.87 -9.18 9.09 32.45 0.30 -8.88 16 24 C -0.18 -2.59 8.54 -39.21 -0.33 -2.92 16 25 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.03 5.63 -51.93 -0.29 0.74 16 28 H 0.06 1.35 4.43 -51.93 -0.23 1.12 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.27 7.82 8.72 -40.82 -0.36 7.47 16 31 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 32 H 0.40 4.30 8.84 -40.82 -0.36 3.94 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.40 3.55 8.31 -40.82 -0.34 3.21 16 36 H 0.40 3.80 8.84 -40.82 -0.36 3.44 16 37 H 0.15 2.50 6.27 -52.49 -0.33 2.17 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -30.99 306.15 -6.70 -37.69 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -4.31 Total: 15.19 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.47 Total: -5.91 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.68 Total: -58.39 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.06 Total: -12.02 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.31 Total: 20.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.99 -6.70 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325640721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.785 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds