Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 H 1.08998 * 109.46971 * 305.78447 * 3 2 1 5 5 C 1.50699 * 109.47123 * 185.78564 * 3 2 1 6 6 H 1.08004 * 119.99844 * 245.25561 * 5 3 2 7 7 C 1.37878 * 120.00246 * 65.25897 * 5 3 2 8 8 N 1.31508 * 120.00647 * 186.12869 * 7 5 3 9 9 Si 1.86806 * 119.99830 * 6.13282 * 7 5 3 10 10 H 1.48498 * 109.46721 * 270.00010 * 9 7 5 11 11 H 1.48500 * 109.47094 * 29.99898 * 9 7 5 12 12 H 1.48501 * 109.47244 * 149.99772 * 9 7 5 13 13 N 1.46504 * 109.47226 * 65.78627 * 3 2 1 14 14 C 1.34773 * 119.99519 * 275.00110 * 13 3 2 15 15 O 1.21588 * 120.00804 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99581 * 179.97438 * 14 13 3 17 17 C 1.40056 * 120.00115 * 184.89104 * 16 14 13 18 18 C 1.38876 * 120.01338 * 144.41989 * 17 16 14 19 19 C 1.38204 * 120.09013 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.11594 * 0.02562 * 19 18 17 21 21 F 1.35099 * 119.98664 * 180.02562 * 20 19 18 22 22 C 1.39097 * 120.03051 * 359.97438 * 20 19 18 23 23 N 1.39835 * 120.04878 * 180.02562 * 22 20 19 24 24 C 1.38739 * 120.01078 * 324.15134 * 17 16 14 25 25 H 1.09001 * 109.47404 * 59.99961 * 1 2 3 26 26 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47061 * 300.00074 * 1 2 3 28 28 H 1.08996 * 109.47239 * 239.99762 * 2 1 3 29 29 H 1.09001 * 109.47404 * 120.00039 * 2 1 3 30 30 H 0.97007 * 119.99526 * 354.97847 * 8 7 5 31 31 H 0.96993 * 120.00056 * 94.99697 * 13 3 2 32 32 H 0.97002 * 120.00252 * 4.89220 * 16 14 13 33 33 H 1.08003 * 119.95802 * 0.02562 * 18 17 16 34 34 H 1.08005 * 119.94332 * 180.02562 * 19 18 17 35 35 H 0.97002 * 119.99474 * 359.97438 * 23 22 20 36 36 H 0.97000 * 119.99880 * 180.02562 * 23 22 20 37 37 H 1.07997 * 120.06238 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5946 1.9853 -0.8337 5 6 3.5402 1.4448 -0.1432 6 1 4.1591 1.8084 0.6638 7 6 4.1226 0.9829 -1.3044 8 7 5.4305 0.8716 -1.3851 9 14 3.0539 0.5152 -2.7635 10 1 2.6886 -0.9210 -2.6691 11 1 1.8198 1.3413 -2.7580 12 1 3.8036 0.7537 -4.0229 13 7 1.6687 2.0917 1.2597 14 6 0.4530 2.6581 1.3931 15 8 -0.3358 2.6298 0.4682 16 7 0.1113 3.2549 2.5522 17 6 -1.1860 3.7529 2.7276 18 6 -1.7950 3.6813 3.9736 19 6 -3.0748 4.1726 4.1486 20 6 -3.7533 4.7365 3.0836 21 9 -5.0041 5.2164 3.2577 22 6 -3.1480 4.8107 1.8334 23 7 -3.8335 5.3813 0.7564 24 6 -1.8610 4.3228 1.6579 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.9895 1.1823 -0.6557 31 1 2.2977 2.1140 1.9977 32 1 0.7637 3.3397 3.2650 33 1 -1.2674 3.2418 4.8073 34 1 -3.5460 4.1161 5.1188 35 1 -4.7318 5.7253 0.8808 36 1 -3.4108 5.4323 -0.1152 37 1 -1.3870 4.3835 0.6894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325640721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = -74.696992 kcal Electronic energy + Delta-G solvation = -21898.967355 eV Core-core repulsion = 18396.486304 eV Total energy + Delta-G solvation = -3502.481052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.69026 -41.65292 -39.80259 -37.40123 -36.15323 -34.78652 -34.42887 -33.03108 -30.49505 -29.48735 -28.69018 -24.59014 -24.08559 -23.28783 -22.25181 -21.44930 -20.29110 -19.17874 -18.76968 -18.34007 -17.90254 -17.07232 -16.66298 -16.47197 -16.21807 -15.85466 -15.53171 -15.09894 -14.72306 -14.52503 -14.39795 -14.33315 -14.03514 -13.70184 -13.64209 -13.57930 -12.73186 -12.50063 -12.37123 -12.24648 -12.03442 -11.69294 -11.47888 -11.08732 -10.89878 -10.83036 -10.66914 -9.85360 -9.18060 -8.77522 -8.45382 -6.46118 0.23281 0.50472 1.43044 1.52165 1.69245 1.73159 2.15789 2.40979 2.78677 2.85763 3.04497 3.37746 3.41716 3.89378 4.28228 4.31685 4.35620 4.39672 4.51789 4.60688 4.77074 4.87310 5.08030 5.12375 5.18715 5.27907 5.29536 5.37688 5.47013 5.56869 5.63075 5.66357 5.95250 6.00602 6.17776 6.43391 6.53159 6.83607 7.16451 7.29688 7.63966 8.62379 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.031726 B = 0.004004 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.332085 B = 6990.813942 C = 7297.492055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.265 3.735 4 H 0.027 0.973 5 C -0.603 4.603 6 H 0.042 0.958 7 C -0.009 4.009 8 N -0.936 5.936 9 Si 1.078 2.922 10 H -0.258 1.258 11 H -0.264 1.264 12 H -0.288 1.288 13 N -0.713 5.713 14 C 0.695 3.305 15 O -0.605 6.605 16 N -0.677 5.677 17 C 0.199 3.801 18 C -0.174 4.174 19 C -0.078 4.078 20 C -0.024 4.024 21 F -0.150 7.150 22 C 0.201 3.799 23 N -0.866 5.866 24 C -0.197 4.197 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.401 0.599 32 H 0.422 0.578 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.408 0.592 36 H 0.408 0.592 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 6.463 11.252 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.160 3.840 4 H 0.045 0.955 5 C -0.642 4.642 6 H 0.060 0.940 7 C -0.208 4.208 8 N -0.572 5.572 9 Si 0.902 3.098 10 H -0.183 1.183 11 H -0.189 1.189 12 H -0.215 1.215 13 N -0.365 5.365 14 C 0.395 3.605 15 O -0.484 6.484 16 N -0.326 5.326 17 C 0.102 3.898 18 C -0.196 4.196 19 C -0.097 4.097 20 C -0.049 4.049 21 F -0.129 7.129 22 C 0.093 3.907 23 N -0.406 5.406 24 C -0.223 4.223 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.236 0.764 32 H 0.260 0.740 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.237 0.763 36 H 0.237 0.763 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.517 5.756 8.883 20.466 hybrid contribution 0.831 1.012 1.728 2.168 sum -16.686 6.768 10.611 20.900 Atomic orbital electron populations 1.21738 0.95378 1.00257 1.01495 1.22171 0.95489 0.98472 1.01227 1.18799 0.93297 0.89453 0.82443 0.95515 1.22371 0.91542 1.46964 1.03296 0.93957 1.26795 0.97743 0.93735 1.02558 1.70935 1.05055 1.44907 1.36302 0.83571 0.74403 0.78508 0.73359 1.18335 1.18871 1.21505 1.45226 1.14154 1.59026 1.18064 1.16126 0.82774 0.78540 0.83019 1.90871 1.51606 1.65654 1.40290 1.42524 1.12436 1.60413 1.17235 1.17466 0.84382 0.93512 0.94402 1.20747 0.95482 1.06776 0.96610 1.20965 0.94096 0.96164 0.98500 1.17268 0.82536 1.10890 0.94204 1.91397 1.38476 1.87104 1.95964 1.17651 0.91579 0.93700 0.87737 1.42350 1.19774 1.68336 1.10141 1.20547 0.94803 1.06082 1.00876 0.94203 0.92586 0.93284 0.93051 0.92085 0.93284 0.76408 0.73972 0.82229 0.81756 0.76266 0.76263 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.53 71.98 0.61 -4.38 16 2 C -0.13 -5.66 5.20 30.59 0.16 -5.50 16 3 C 0.27 12.14 1.81 44.24 0.08 12.22 16 4 H 0.03 1.37 6.06 -2.39 -0.01 1.36 16 5 C -0.60 -32.02 9.09 25.60 0.23 -31.78 16 6 H 0.04 2.36 7.95 -2.91 -0.02 2.34 16 7 C -0.01 -0.47 5.43 84.66 0.46 -0.01 16 8 N -0.94 -56.18 13.70 21.45 0.29 -55.89 16 9 Si 1.08 50.17 25.36 68.60 1.74 51.91 16 10 H -0.26 -11.05 6.76 99.48 0.67 -10.37 16 11 H -0.26 -11.81 6.36 99.48 0.63 -11.18 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.71 -26.69 5.03 -461.41 -2.32 -29.01 16 14 C 0.69 24.65 7.01 179.05 1.26 25.91 16 15 O -0.60 -25.23 10.95 -3.99 -0.04 -25.27 16 16 N -0.68 -17.73 5.34 -317.17 -1.70 -19.42 16 17 C 0.20 5.15 6.29 38.10 0.24 5.39 16 18 C -0.17 -3.37 9.96 22.41 0.22 -3.15 16 19 C -0.08 -1.46 10.01 22.27 0.22 -1.24 16 20 C -0.02 -0.56 7.31 22.49 0.16 -0.40 16 21 F -0.15 -3.44 16.63 44.97 0.75 -2.69 16 22 C 0.20 5.07 6.76 38.19 0.26 5.33 16 23 N -0.87 -17.64 9.09 -51.25 -0.47 -18.11 16 24 C -0.20 -5.72 8.54 22.51 0.19 -5.53 16 25 H 0.04 1.60 7.89 -2.39 -0.02 1.58 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.88 5.63 -2.38 -0.01 1.86 16 28 H 0.05 2.24 4.43 -2.39 -0.01 2.23 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 30 H 0.26 15.47 8.72 -92.70 -0.81 14.67 16 31 H 0.40 13.08 8.54 -92.71 -0.79 12.29 16 32 H 0.42 7.99 8.84 -92.71 -0.82 7.17 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.41 6.83 8.31 -92.71 -0.77 6.06 16 36 H 0.41 7.63 8.84 -92.71 -0.82 6.81 16 37 H 0.13 4.27 6.27 -2.91 -0.02 4.25 16 Total: -1.00 -67.06 306.15 0.17 -66.89 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -2.18 Total: 34.75 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.10 Total: -3.15 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -4.19 Total: -122.43 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.04 Total: -25.27 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.75 Total: -2.69 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.74 Total: 51.91 kcal Total: -67.06 0.17 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325640721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.810 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds