Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46763 * 239.99813 * 2 1 3 5 5 N 1.46499 * 109.47484 * 65.00226 * 4 2 1 6 6 C 1.36936 * 120.00319 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99630 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00297 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00209 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99695 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47224 * 89.99894 * 10 8 6 12 12 H 1.48504 * 109.46690 * 210.00109 * 10 8 6 13 13 H 1.48496 * 109.47184 * 329.99447 * 10 8 6 14 14 C 1.53001 * 109.46806 * 119.99739 * 2 1 3 15 15 N 1.46493 * 109.47084 * 294.99611 * 14 2 1 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 2 17 17 O 1.21530 * 119.99849 * 359.72910 * 16 15 14 18 18 C 1.47990 * 119.99990 * 179.72738 * 16 15 14 19 19 C 1.39904 * 120.94675 * 0.02562 * 18 16 15 20 20 C 1.38031 * 119.03982 * 180.02562 * 19 18 16 21 21 N 1.31863 * 120.98131 * 0.02562 * 20 19 18 22 22 C 1.31715 * 122.09470 * 359.97438 * 21 20 19 23 23 C 1.38541 * 120.84571 * 359.71648 * 22 21 20 24 24 F 1.35101 * 120.53838 * 180.28715 * 23 22 21 25 25 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47177 * 300.00294 * 1 2 3 27 27 H 1.08996 * 109.46781 * 60.00115 * 1 2 3 28 28 H 1.09007 * 109.47118 * 185.00054 * 4 2 1 29 29 H 1.09002 * 109.47058 * 304.99684 * 4 2 1 30 30 H 0.97000 * 119.99692 * 359.97438 * 5 4 2 31 31 H 0.96999 * 120.00448 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.46593 * 174.99868 * 14 2 1 33 33 H 1.09006 * 109.47216 * 55.00327 * 14 2 1 34 34 H 0.97000 * 120.00740 * 359.72857 * 15 14 2 35 35 H 1.08008 * 120.47874 * 359.97438 * 19 18 16 36 36 H 1.08007 * 119.51087 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.58011 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0019 -0.4204 -3.6855 7 1 2.5629 -1.3378 -3.7864 8 6 1.6343 0.2961 -4.8161 9 7 1.9697 -0.1421 -6.0109 10 14 0.6634 1.8825 -4.6416 11 1 1.6022 3.0271 -4.5252 12 1 -0.1989 2.0689 -5.8362 13 1 -0.1850 1.8123 -3.4249 14 6 2.0400 -0.7212 1.2493 15 7 1.6525 0.0355 2.4423 16 6 1.9965 -0.4129 3.6660 17 8 2.6238 -1.4475 3.7798 18 6 1.6102 0.3546 4.8709 19 6 0.8876 1.5477 4.7629 20 6 0.5485 2.2321 5.9126 21 7 0.8959 1.7774 7.1006 22 6 1.5760 0.6595 7.2506 23 6 1.9532 -0.0955 6.1519 24 9 2.6457 -1.2442 6.3133 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7996 -1.2056 29 1 1.6053 -1.7199 -1.2950 30 1 1.1483 0.8590 -2.3518 31 1 1.7125 0.3584 -6.8010 32 1 3.1264 -0.7994 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.1521 0.8615 2.3516 35 1 0.6000 1.9282 3.7938 36 1 -0.0096 3.1537 5.8381 37 1 1.8396 0.3248 8.2431 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698746553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = -59.227019 kcal Electronic energy + Delta-G solvation = -21020.423702 eV Core-core repulsion = 17518.613478 eV Total energy + Delta-G solvation = -3501.810223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.08318 -41.60222 -40.32376 -38.37434 -36.16187 -34.54934 -33.62082 -32.28194 -31.95910 -28.01940 -27.55182 -25.76268 -24.54798 -23.79469 -22.03007 -21.55283 -19.90033 -19.17561 -18.46468 -18.34617 -17.19163 -17.04858 -16.79645 -16.50153 -16.26492 -15.70946 -15.52420 -15.38998 -15.07176 -14.85418 -14.53541 -14.50974 -14.17937 -13.87573 -13.65166 -13.24499 -13.15816 -12.87025 -12.18391 -12.14844 -12.02852 -11.76608 -11.74803 -11.52470 -11.14089 -10.98170 -10.71007 -10.26396 -10.10213 -9.30308 -8.02386 -5.36983 -0.62295 -0.19866 1.37940 1.43969 1.51238 1.65142 1.81632 2.49737 2.57502 2.82800 3.28757 3.30093 3.39746 3.51105 3.56582 3.65307 3.91634 3.98293 4.10494 4.28593 4.49768 4.50613 4.63194 4.65705 4.74367 4.75747 4.91878 5.00997 5.08640 5.17827 5.30787 5.43161 5.44940 5.75601 6.20975 6.30387 6.65476 6.96770 7.08321 7.82682 8.04010 9.19325 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.003037 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.799515 B = 9217.707687 C = 9895.885750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.094 0.906 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.068 4.068 9 N -0.987 5.987 10 Si 0.961 3.039 11 H -0.276 1.276 12 H -0.298 1.298 13 H -0.243 1.243 14 C 0.135 3.865 15 N -0.697 5.697 16 C 0.552 3.448 17 O -0.567 6.567 18 C -0.140 4.140 19 C -0.097 4.097 20 C 0.092 3.908 21 N -0.457 5.457 22 C 0.075 3.925 23 C 0.077 3.923 24 F -0.127 7.127 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.369 0.631 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.418 0.582 35 H 0.185 0.815 36 H 0.209 0.791 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 8.564 28.454 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.112 0.888 4 C 0.031 3.969 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.069 0.931 8 C -0.259 4.259 9 N -0.637 5.637 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.225 1.225 13 H -0.167 1.167 14 C 0.011 3.989 15 N -0.350 5.350 16 C 0.338 3.662 17 O -0.446 6.446 18 C -0.152 4.152 19 C -0.117 4.117 20 C -0.064 4.064 21 N -0.165 5.165 22 C -0.083 4.083 23 C 0.054 3.946 24 F -0.105 7.105 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.204 0.796 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.257 0.743 35 H 0.202 0.798 36 H 0.226 0.774 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.893 8.095 29.104 30.778 hybrid contribution 0.073 -0.110 -1.506 1.512 sum -5.820 7.984 27.598 29.313 Atomic orbital electron populations 1.21835 0.93446 1.02418 1.02389 1.21405 0.97510 1.00638 0.92102 0.88822 1.20704 0.96993 0.94219 0.84959 1.42598 1.67616 1.27918 1.01801 1.19026 1.28106 1.05750 0.84108 0.93071 1.25615 1.02668 1.03154 0.94487 1.69904 1.53384 1.42390 0.98031 0.85334 0.78779 0.79380 0.77824 1.20227 1.22476 1.16668 1.21233 0.99992 0.95201 0.82501 1.45677 1.56912 1.27973 1.04450 1.18280 0.79435 0.84571 0.83883 1.90848 1.41221 1.25485 1.87037 1.20613 1.03569 0.98792 0.92184 1.22733 0.94133 0.91355 1.03468 1.23524 0.96406 1.00587 0.85864 1.67701 1.08902 1.11546 1.28369 1.23269 0.95685 0.90612 0.98749 1.19270 0.95642 0.84815 0.94842 1.91572 1.76173 1.46672 1.96115 0.92950 0.89822 0.93205 0.95833 0.95857 0.79649 0.93309 0.91736 0.91512 0.74333 0.79787 0.77415 0.78974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.94 71.98 0.64 -2.42 16 2 C -0.10 -2.33 2.46 -10.79 -0.03 -2.35 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.16 5.62 5.65 86.38 0.49 6.11 16 5 N -0.75 -33.49 5.13 -343.45 -1.76 -35.26 16 6 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 7 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 8 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 9 N -0.99 -63.18 13.97 21.65 0.30 -62.88 16 10 Si 0.96 43.66 27.74 68.60 1.90 45.56 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.24 -9.51 6.52 99.48 0.65 -8.86 16 14 C 0.13 3.04 5.06 86.38 0.44 3.48 16 15 N -0.70 -12.21 5.24 -465.83 -2.44 -14.65 16 16 C 0.55 12.70 7.79 86.83 0.68 13.38 16 17 O -0.57 -18.66 15.48 -3.81 -0.06 -18.72 16 18 C -0.14 -2.42 5.91 -19.85 -0.12 -2.54 16 19 C -0.10 -0.81 9.61 22.62 0.22 -0.59 16 20 C 0.09 0.71 11.17 84.64 0.95 1.65 16 21 N -0.46 -5.91 10.33 -195.81 -2.02 -7.93 16 22 C 0.08 1.05 11.17 84.78 0.95 2.00 16 23 C 0.08 1.48 7.33 22.78 0.17 1.65 16 24 F -0.13 -3.20 15.72 44.97 0.71 -2.50 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.13 7.19 -2.39 -0.02 1.11 16 27 H 0.05 1.25 7.18 -2.39 -0.02 1.23 16 28 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.37 15.10 4.71 -92.71 -0.44 14.67 16 31 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.42 4.10 5.80 -92.71 -0.54 3.56 16 35 H 0.18 0.14 6.54 -2.91 -0.02 0.12 16 36 H 0.21 -0.01 8.06 -2.91 -0.02 -0.04 16 37 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -79.45 318.17 2.43 -77.03 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.08 Total: 15.13 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.73 Total: 4.22 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -5.92 Total: -120.72 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.71 Total: -2.50 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Total: -79.45 2.43 -77.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698746553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.799 kcal (2) G-P(sol) polarization free energy of solvation -79.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds