Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 119.99999 * 2 1 4 4 C 1.53004 * 109.47258 * 270.00101 * 3 2 1 5 5 N 1.46497 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.36940 * 120.00005 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00017 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00019 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47212 * 89.99392 * 10 8 6 12 12 H 1.48492 * 109.46943 * 209.99936 * 10 8 6 13 13 H 1.48505 * 109.47042 * 329.99745 * 10 8 6 14 14 C 1.34778 * 120.00092 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00276 * 179.97438 * 14 2 1 16 16 C 1.50694 * 120.00045 * 359.97438 * 14 2 1 17 17 C 1.50698 * 109.47675 * 180.02562 * 16 14 2 18 18 C 1.38232 * 119.59260 * 124.99570 * 17 16 14 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 305.02401 * 17 16 14 24 24 H 1.08999 * 109.47359 * 269.99869 * 1 2 3 25 25 H 1.08999 * 109.47303 * 29.99938 * 1 2 3 26 26 H 1.08999 * 109.47058 * 149.99701 * 1 2 3 27 27 H 1.09001 * 109.47439 * 29.99979 * 3 2 1 28 28 H 1.08996 * 109.47350 * 150.00409 * 3 2 1 29 29 H 1.09000 * 109.47309 * 300.00186 * 4 3 2 30 30 H 1.09000 * 109.47099 * 60.00176 * 4 3 2 31 31 H 0.97001 * 119.99736 * 359.97438 * 5 4 3 32 32 H 0.97000 * 120.00325 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.47563 * 59.99977 * 16 14 2 34 34 H 1.09001 * 109.46967 * 300.00081 * 16 14 2 35 35 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 36 36 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1844 2.9794 -1.4425 6 6 3.5262 3.5727 -2.6285 7 1 3.2565 3.1049 -3.5637 8 6 4.2202 4.7750 -2.6284 9 7 4.5493 5.3448 -1.4886 10 14 4.6871 5.5839 -4.2462 11 1 3.5982 6.4982 -4.6748 12 1 5.9420 6.3576 -4.0686 13 1 4.8921 4.5389 -5.2812 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 6 2.3646 -3.6178 -0.0005 18 6 2.2842 -4.5846 0.9842 19 6 3.1893 -5.6341 0.9765 20 6 4.1512 -5.6695 -0.0247 21 9 5.0571 -6.6708 -0.0686 22 6 4.1664 -4.6676 -0.9797 23 7 3.2878 -3.6850 -0.9395 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5137 29 1 3.0415 0.9508 -1.9564 30 1 1.5000 1.8408 -1.9563 31 1 3.4263 3.3998 -0.6025 32 1 5.0340 6.1851 -1.4885 33 1 0.7584 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8897 35 1 1.5253 -4.5229 1.7501 36 1 3.1504 -6.4035 1.7335 37 1 4.9086 -4.6886 -1.7640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753203953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -24.265449 kcal Electronic energy + Delta-G solvation = -21019.709056 eV Core-core repulsion = 17519.414880 eV Total energy + Delta-G solvation = -3500.294176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.20903 -40.64240 -39.34423 -35.85781 -34.32263 -33.02076 -32.73355 -31.32430 -28.93265 -27.64270 -26.21402 -24.26184 -23.77148 -22.59931 -21.36491 -19.15932 -17.89656 -17.64497 -17.17092 -16.84806 -16.54056 -16.00132 -15.75172 -15.22583 -14.55672 -14.30751 -14.15460 -13.99281 -13.56639 -13.26586 -13.23809 -13.05625 -12.97651 -12.78218 -12.37572 -12.29457 -12.07039 -11.20027 -10.95290 -10.84581 -10.63396 -10.20180 -10.07138 -9.82304 -9.71632 -9.58682 -9.05104 -8.82632 -8.45494 -6.88366 -5.71845 -3.00715 0.62329 0.85931 2.78693 3.03218 3.44833 3.47554 3.52630 3.55093 3.72563 4.02082 4.26053 4.46275 4.51444 4.65195 4.68595 5.00231 5.02777 5.09401 5.24578 5.35038 5.44498 5.55216 5.55900 5.63904 5.64953 5.70485 5.89042 6.08570 6.17461 6.33371 6.60848 6.79899 6.98144 7.52870 7.68113 7.75030 8.35687 8.46986 9.57655 10.14311 10.49385 11.51222 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.003219 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.757742 B = 8696.267623 C = 9560.040104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.109 3.891 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.514 3.486 15 O -0.515 6.515 16 C -0.090 4.090 17 C 0.135 3.865 18 C -0.139 4.139 19 C -0.110 4.110 20 C 0.041 3.959 21 F -0.132 7.132 22 C 0.085 3.915 23 N -0.425 5.425 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.024 0.976 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 -22.794 7.401 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C -0.013 4.013 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.301 3.699 15 O -0.389 6.389 16 C -0.131 4.131 17 C -0.004 4.004 18 C -0.159 4.159 19 C -0.137 4.137 20 C 0.019 3.981 21 F -0.111 7.111 22 C -0.075 4.075 23 N -0.133 5.133 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.076 -22.139 6.589 25.200 hybrid contribution 0.425 -0.171 0.038 0.460 sum -9.651 -22.310 6.627 25.195 Atomic orbital electron populations 1.21823 0.79777 1.03502 1.01580 1.47789 1.06828 1.06268 1.74028 1.21684 0.97401 0.83082 0.99137 1.20910 0.95067 0.89372 0.93235 1.42215 1.67180 1.21596 1.06559 1.19220 1.29293 1.02265 0.85997 0.91195 1.24746 1.01296 0.98097 0.96921 1.69659 1.45166 1.19546 1.23946 0.86159 0.77648 0.79231 0.83004 1.21736 1.21737 1.20724 1.20155 0.88127 0.84643 0.77018 1.90775 1.13580 1.86813 1.47711 1.20655 0.96815 0.90084 1.05502 1.20717 0.94005 0.94499 0.91139 1.21849 1.00107 0.94328 0.99574 1.21587 0.94280 0.99734 0.98053 1.18876 0.91128 0.89078 0.98997 1.91520 1.64991 1.58453 1.96146 1.22961 0.97995 0.88867 0.97662 1.67551 1.01757 1.20307 1.23669 0.92635 0.90489 0.91282 0.90544 0.89803 0.95794 0.96510 0.78306 0.93521 0.86765 0.87246 0.83718 0.83538 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.24 59.84 0.61 1.29 16 2 N -0.61 -8.48 2.87 -181.58 -0.52 -9.01 16 3 C 0.11 1.91 5.52 -4.04 -0.02 1.89 16 4 C 0.14 3.10 6.58 -4.04 -0.03 3.08 16 5 N -0.73 -19.56 5.60 -59.91 -0.34 -19.89 16 6 C -0.24 -6.94 9.99 -15.05 -0.15 -7.09 16 7 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 10 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.51 7.60 7.61 -10.99 -0.08 7.51 16 15 O -0.51 -10.22 14.91 5.56 0.08 -10.13 16 16 C -0.09 -0.86 4.65 -29.04 -0.14 -1.00 16 17 C 0.13 1.53 5.76 -82.59 -0.48 1.05 16 18 C -0.14 -1.16 9.71 -39.45 -0.38 -1.55 16 19 C -0.11 -0.94 10.16 -39.21 -0.40 -1.34 16 20 C 0.04 0.43 7.35 -39.28 -0.29 0.14 16 21 F -0.13 -1.40 17.28 2.25 0.04 -1.36 16 22 C 0.08 1.01 11.17 -17.47 -0.20 0.81 16 23 N -0.43 -5.95 9.22 -9.42 -0.09 -6.04 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.08 1.65 7.42 -51.93 -0.39 1.26 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 32 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.11 0.89 7.40 -51.93 -0.38 0.51 16 34 H 0.11 0.62 7.83 -51.93 -0.41 0.22 16 35 H 0.15 0.70 7.95 -52.49 -0.42 0.29 16 36 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -37.03 325.61 -6.60 -43.63 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.74 Total: 3.89 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.64 Total: 4.26 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.22 Total: -63.26 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.03 -6.60 -43.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753203953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.362 kcal (2) G-P(sol) polarization free energy of solvation -37.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds