Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 119.99999 * 2 1 4 4 C 1.53004 * 109.47258 * 270.00101 * 3 2 1 5 5 N 1.46497 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.36940 * 120.00005 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00017 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99874 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00019 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47212 * 89.99392 * 10 8 6 12 12 H 1.48492 * 109.46943 * 209.99936 * 10 8 6 13 13 H 1.48505 * 109.47042 * 329.99745 * 10 8 6 14 14 C 1.34778 * 120.00092 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00276 * 179.97438 * 14 2 1 16 16 C 1.50694 * 120.00045 * 359.97438 * 14 2 1 17 17 C 1.50698 * 109.47675 * 180.02562 * 16 14 2 18 18 C 1.38232 * 119.59260 * 124.99570 * 17 16 14 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 305.02401 * 17 16 14 24 24 H 1.08999 * 109.47359 * 269.99869 * 1 2 3 25 25 H 1.08999 * 109.47303 * 29.99938 * 1 2 3 26 26 H 1.08999 * 109.47058 * 149.99701 * 1 2 3 27 27 H 1.09001 * 109.47439 * 29.99979 * 3 2 1 28 28 H 1.08996 * 109.47350 * 150.00409 * 3 2 1 29 29 H 1.09000 * 109.47309 * 300.00186 * 4 3 2 30 30 H 1.09000 * 109.47099 * 60.00176 * 4 3 2 31 31 H 0.97001 * 119.99736 * 359.97438 * 5 4 3 32 32 H 0.97000 * 120.00325 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.47563 * 59.99977 * 16 14 2 34 34 H 1.09001 * 109.46967 * 300.00081 * 16 14 2 35 35 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 36 36 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 7 3.1844 2.9794 -1.4425 6 6 3.5262 3.5727 -2.6285 7 1 3.2565 3.1049 -3.5637 8 6 4.2202 4.7750 -2.6284 9 7 4.5493 5.3448 -1.4886 10 14 4.6871 5.5839 -4.2462 11 1 3.5982 6.4982 -4.6748 12 1 5.9420 6.3576 -4.0686 13 1 4.8921 4.5389 -5.2812 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 6 2.3646 -3.6178 -0.0005 18 6 2.2842 -4.5846 0.9842 19 6 3.1893 -5.6341 0.9765 20 6 4.1512 -5.6695 -0.0247 21 9 5.0571 -6.6708 -0.0686 22 6 4.1664 -4.6676 -0.9797 23 7 3.2878 -3.6850 -0.9395 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5137 29 1 3.0415 0.9508 -1.9564 30 1 1.5000 1.8408 -1.9563 31 1 3.4263 3.3998 -0.6025 32 1 5.0340 6.1851 -1.4885 33 1 0.7584 -2.5299 -0.8903 34 1 0.7591 -2.5302 0.8897 35 1 1.5253 -4.5229 1.7501 36 1 3.1504 -6.4035 1.7335 37 1 4.9086 -4.6886 -1.7640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753203953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -51.057863 kcal Electronic energy + Delta-G solvation = -21020.870862 eV Core-core repulsion = 17519.414880 eV Total energy + Delta-G solvation = -3501.455982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.00886 -41.50605 -40.38713 -37.34831 -36.03652 -34.00099 -33.47071 -33.20509 -30.33098 -28.69331 -27.32729 -25.64444 -24.93918 -23.77722 -22.88773 -20.30214 -19.20170 -18.65999 -18.46010 -17.88146 -17.51716 -17.00824 -16.80569 -16.37306 -16.31804 -15.38180 -15.32788 -15.11942 -14.90146 -14.83837 -14.53937 -14.00453 -13.88624 -13.85054 -13.22964 -13.14054 -13.06650 -12.94063 -12.85213 -12.59930 -12.30889 -12.14321 -11.88972 -10.99674 -10.93901 -10.85307 -10.49557 -9.84499 -9.62183 -9.08385 -7.99607 -5.30485 -0.14027 0.15581 1.44589 1.47790 1.56330 1.71083 2.01207 2.53898 2.64863 2.97812 3.28575 3.33464 3.58793 3.71256 3.79494 3.93360 4.07325 4.17587 4.25968 4.33201 4.40714 4.48690 4.57413 4.63655 4.75769 4.84159 4.88358 4.96726 5.03360 5.05079 5.10650 5.41457 5.57395 5.62577 6.22154 6.48674 6.90993 7.27488 7.28498 7.99894 8.25521 9.23839 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.003219 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.757742 B = 8696.267623 C = 9560.040104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.613 5.613 3 C 0.124 3.876 4 C 0.150 3.850 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.273 1.273 14 C 0.504 3.496 15 O -0.579 6.579 16 C -0.079 4.079 17 C 0.110 3.890 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.031 3.969 21 F -0.137 7.137 22 C 0.058 3.942 23 N -0.472 5.472 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.054 0.946 29 H -0.006 1.006 30 H 0.030 0.970 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.191 0.809 36 H 0.180 0.820 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 -24.019 8.221 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.347 5.347 3 C 0.000 4.000 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.198 1.198 14 C 0.293 3.707 15 O -0.457 6.457 16 C -0.118 4.118 17 C -0.028 4.028 18 C -0.143 4.143 19 C -0.131 4.131 20 C 0.010 3.990 21 F -0.116 7.116 22 C -0.100 4.100 23 N -0.181 5.181 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.048 0.952 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.153 0.847 34 H 0.178 0.822 35 H 0.208 0.792 36 H 0.198 0.802 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.837 -23.403 7.399 27.699 hybrid contribution 1.225 0.161 -0.191 1.250 sum -11.613 -23.242 7.208 26.963 Atomic orbital electron populations 1.22202 0.76179 1.04957 1.04006 1.47910 1.08877 1.04585 1.73289 1.21265 0.97264 0.85656 0.95819 1.20950 0.94137 0.86573 0.96157 1.42405 1.67725 1.22997 1.05569 1.19594 1.29259 1.02645 0.86936 0.91049 1.25638 1.01527 0.98809 1.00573 1.69815 1.45983 1.19871 1.26131 0.85071 0.77217 0.78198 0.78842 1.20571 1.21849 1.19809 1.21189 0.87782 0.86346 0.75363 1.90752 1.16631 1.87803 1.50552 1.20794 0.96275 0.85922 1.08837 1.21212 0.94050 0.95938 0.91608 1.22298 1.00292 0.92657 0.99016 1.22026 0.93039 1.00438 0.97626 1.18997 0.91788 0.88711 0.99536 1.91504 1.65333 1.58493 1.96226 1.23006 0.98531 0.89691 0.98792 1.67478 1.03270 1.21426 1.25883 0.89650 0.90967 0.88014 0.88599 0.92756 0.98796 0.95166 0.79263 0.93728 0.84673 0.82190 0.79154 0.80227 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.24 127.77 1.31 2.24 16 2 N -0.61 -16.00 2.87 -846.78 -2.43 -18.43 16 3 C 0.12 4.37 5.52 86.38 0.48 4.85 16 4 C 0.15 6.65 6.58 86.38 0.57 7.22 16 5 N -0.74 -40.85 5.60 -343.45 -1.92 -42.77 16 6 C -0.25 -15.06 9.99 84.04 0.84 -14.22 16 7 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.38 5.50 84.87 0.47 -3.91 16 9 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 10 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.50 14.42 7.61 87.65 0.67 15.09 16 15 O -0.58 -23.84 14.91 -3.03 -0.05 -23.88 16 16 C -0.08 -1.25 4.65 29.10 0.14 -1.11 16 17 C 0.11 2.30 5.76 42.55 0.25 2.55 16 18 C -0.12 -1.63 9.71 22.35 0.22 -1.41 16 19 C -0.11 -1.51 10.16 22.51 0.23 -1.28 16 20 C 0.03 0.64 7.35 22.47 0.17 0.81 16 21 F -0.14 -2.89 17.28 44.97 0.78 -2.11 16 22 C 0.06 1.47 11.17 84.73 0.95 2.42 16 23 N -0.47 -13.52 9.22 -183.71 -1.69 -15.21 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 26 H 0.10 0.76 6.44 -2.39 -0.02 0.75 16 27 H 0.10 2.98 8.07 -2.39 -0.02 2.96 16 28 H 0.05 2.24 7.42 -2.39 -0.02 2.22 16 29 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.38 21.47 7.67 -92.71 -0.71 20.76 16 32 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.14 1.58 7.40 -2.38 -0.02 1.56 16 34 H 0.16 0.86 7.83 -2.39 -0.02 0.84 16 35 H 0.19 0.67 7.95 -2.91 -0.02 0.65 16 36 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -85.58 325.61 3.64 -81.94 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.38 Total: 18.27 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.27 Total: 13.24 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -5.77 Total: -137.26 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -85.58 3.64 -81.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753203953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.887 kcal (2) G-P(sol) polarization free energy of solvation -85.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds