Wall clock time and date at job start Tue Mar 31 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.36937 * 120.00196 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99412 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 120.00351 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47308 * 89.99659 * 10 8 6 12 12 H 1.48499 * 109.47402 * 209.99959 * 10 8 6 13 13 H 1.48506 * 109.47175 * 330.00158 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 C 1.34769 * 119.99686 * 84.99974 * 14 2 1 16 16 O 1.21275 * 120.00678 * 0.02562 * 15 14 2 17 17 C 1.50701 * 119.99690 * 179.97438 * 15 14 2 18 18 C 1.50704 * 109.47153 * 179.97438 * 17 15 14 19 19 C 1.38236 * 119.58826 * 124.72701 * 18 17 15 20 20 C 1.38583 * 119.19016 * 179.77366 * 19 18 17 21 21 C 1.38882 * 118.39820 * 0.49436 * 20 19 18 22 22 F 1.35105 * 120.44241 * 179.77313 * 21 20 19 23 23 C 1.38418 * 119.11279 * 359.75002 * 21 20 19 24 24 N 1.31844 * 119.59369 * 305.00212 * 18 17 15 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99644 * 180.02562 * 9 8 6 32 32 H 0.97000 * 119.99634 * 265.00306 * 14 2 1 33 33 H 1.08996 * 109.47353 * 300.00507 * 17 15 14 34 34 H 1.09006 * 109.47337 * 60.00072 * 17 15 14 35 35 H 1.08007 * 120.40116 * 0.02562 * 19 18 17 36 36 H 1.08003 * 120.80169 * 180.22172 * 20 19 18 37 37 H 1.07998 * 119.63750 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6467 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2243 -2.1262 3.1286 10 14 6.4961 -0.8379 0.6900 11 1 6.8578 0.5760 0.9644 12 1 7.7316 -1.6298 0.4632 13 1 5.6373 -0.9032 -0.5198 14 7 2.0184 -0.6906 -1.1962 15 6 2.1472 -0.0183 -2.3570 16 8 1.8592 1.1585 -2.4115 17 6 2.6501 -0.7285 -3.5873 18 6 2.7001 0.2396 -4.7412 19 6 3.8849 0.4196 -5.4303 20 6 3.9203 1.3084 -6.4930 21 6 2.7580 1.9953 -6.8186 22 9 2.7473 2.8751 -7.8439 23 6 1.6107 1.7662 -6.0790 24 7 1.6148 0.9085 -5.0774 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -0.1583 2.1369 29 1 1.6053 -1.7198 1.2952 30 1 3.9825 -0.4622 0.4320 31 1 7.1910 -2.1958 3.0897 32 1 2.2491 -1.6318 -1.1525 33 1 3.6494 -1.1204 -3.3977 34 1 1.9779 -1.5509 -3.8325 35 1 4.7710 -0.1289 -5.1465 36 1 4.8310 1.4665 -7.0516 37 1 0.7022 2.2961 -6.3246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754273434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:29 Heat of formation + Delta-G solvation = -34.678706 kcal Electronic energy + Delta-G solvation = -21365.238881 eV Core-core repulsion = 17864.493152 eV Total energy + Delta-G solvation = -3500.745729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.22268 -40.60385 -39.29382 -36.32767 -33.74313 -33.01625 -32.73032 -31.45487 -30.36896 -27.96412 -25.97569 -24.23187 -23.11300 -22.19000 -21.00004 -20.18195 -17.97989 -17.81060 -17.59053 -16.78081 -16.56926 -16.01432 -15.65408 -15.13485 -14.67195 -14.31557 -14.19555 -14.02961 -13.92940 -13.33464 -13.09310 -12.92915 -12.68860 -12.43441 -12.39438 -12.31329 -11.96100 -11.81242 -11.10736 -10.93102 -10.52342 -10.19689 -10.17600 -9.85328 -9.66325 -9.63627 -9.06247 -8.97852 -8.80787 -7.31105 -5.82944 -3.19096 0.62583 0.86264 2.83026 3.17895 3.28880 3.35461 3.39951 3.55218 3.72587 4.02241 4.32578 4.46214 4.52875 4.59207 4.88180 5.04305 5.13933 5.19012 5.29448 5.35471 5.45294 5.50996 5.57376 5.57665 5.68126 5.82277 5.93694 6.05899 6.32117 6.33891 6.38062 6.58509 6.83630 7.64118 7.74455 7.92793 8.35718 8.44141 9.14555 9.86641 10.06383 11.35345 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.004226 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.863006 B = 6623.356338 C = 7757.664708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.086 0.914 4 C 0.149 3.851 5 N -0.755 5.755 6 C -0.246 4.246 7 H 0.091 0.909 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.885 3.115 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.278 1.278 14 N -0.717 5.717 15 C 0.519 3.481 16 O -0.530 6.530 17 C -0.096 4.096 18 C 0.138 3.862 19 C -0.137 4.137 20 C -0.109 4.109 21 C 0.040 3.960 22 F -0.133 7.133 23 C 0.081 3.919 24 N -0.428 5.428 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.362 0.638 31 H 0.260 0.740 32 H 0.404 0.596 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 3.344 -19.700 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.401 5.401 6 C -0.376 4.376 7 H 0.109 0.891 8 C -0.190 4.190 9 N -0.580 5.580 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.205 1.205 14 N -0.369 5.369 15 C 0.303 3.697 16 O -0.406 6.406 17 C -0.137 4.137 18 C 0.000 4.000 19 C -0.157 4.157 20 C -0.135 4.135 21 C 0.018 3.982 22 F -0.112 7.112 23 C -0.078 4.078 24 N -0.136 5.136 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.195 0.805 31 H 0.070 0.930 32 H 0.239 0.761 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.450 3.970 -19.056 21.638 hybrid contribution 1.798 0.336 -1.584 2.420 sum -7.652 4.307 -20.640 22.430 Atomic orbital electron populations 1.22080 0.95160 1.02010 1.02284 1.21283 0.93801 0.97850 0.84415 0.89631 1.20971 0.85406 0.97648 0.93863 1.42703 1.01367 1.71473 1.24602 1.19062 0.89891 1.29576 0.99088 0.89115 1.24670 0.96173 1.00541 0.97618 1.69702 1.07360 1.48432 1.32525 0.86556 0.79713 0.79005 0.83230 1.21119 1.21681 1.20481 1.46026 1.67096 1.14439 1.09351 1.20113 0.77984 0.87440 0.84135 1.90712 1.49435 1.15731 1.84711 1.20653 1.04914 0.97578 0.90522 1.20679 0.89063 0.95119 0.95149 1.21926 0.99292 0.98877 0.95558 1.21608 0.97893 0.96040 0.97984 1.18858 0.96615 0.93223 0.89476 1.91516 1.97129 1.66250 1.56275 1.22892 0.97196 0.96440 0.91315 1.67506 1.29573 1.04717 1.11757 0.92453 0.91611 0.92280 0.94017 0.94892 0.80472 0.93001 0.76143 0.86895 0.86691 0.83538 0.83482 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.13 2.04 2.73 -67.93 -0.19 1.86 16 3 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 4 C 0.15 2.70 5.82 -4.04 -0.02 2.67 16 5 N -0.76 -17.18 5.24 -59.91 -0.31 -17.49 16 6 C -0.25 -6.77 10.47 -15.06 -0.16 -6.93 16 7 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 8 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 9 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 10 Si 0.88 21.62 27.74 -169.99 -4.71 16.90 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 14 N -0.72 -10.29 4.52 -53.80 -0.24 -10.54 16 15 C 0.52 7.70 7.73 -10.99 -0.08 7.61 16 16 O -0.53 -9.81 15.00 5.56 0.08 -9.72 16 17 C -0.10 -1.05 6.10 -29.03 -0.18 -1.23 16 18 C 0.14 1.67 5.76 -82.59 -0.48 1.19 16 19 C -0.14 -1.35 9.71 -39.45 -0.38 -1.74 16 20 C -0.11 -1.03 10.16 -39.22 -0.40 -1.43 16 21 C 0.04 0.42 7.35 -39.28 -0.29 0.13 16 22 F -0.13 -1.41 17.28 2.25 0.04 -1.37 16 23 C 0.08 0.92 11.17 -17.47 -0.20 0.73 16 24 N -0.43 -5.75 9.22 -9.42 -0.09 -5.84 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.36 8.19 5.20 -40.82 -0.21 7.97 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.40 5.20 8.60 -40.82 -0.35 4.85 16 33 H 0.11 1.01 7.87 -51.93 -0.41 0.60 16 34 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.15 1.08 7.95 -52.48 -0.42 0.66 16 36 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -34.26 324.21 -6.44 -40.70 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.76 Total: 9.17 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.11 Total: 1.27 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.13 Total: -61.84 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.26 -6.44 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754273434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.022 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds