Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46500 * 109.47170 * 175.00049 * 4 2 1 6 6 C 1.36937 * 120.00196 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99412 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 120.00351 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47308 * 89.99659 * 10 8 6 12 12 H 1.48499 * 109.47402 * 209.99959 * 10 8 6 13 13 H 1.48506 * 109.47175 * 330.00158 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 C 1.34769 * 119.99686 * 84.99974 * 14 2 1 16 16 O 1.21275 * 120.00678 * 0.02562 * 15 14 2 17 17 C 1.50701 * 119.99690 * 179.97438 * 15 14 2 18 18 C 1.50704 * 109.47153 * 179.97438 * 17 15 14 19 19 C 1.38236 * 119.58826 * 124.72701 * 18 17 15 20 20 C 1.38583 * 119.19016 * 179.77366 * 19 18 17 21 21 C 1.38882 * 118.39820 * 0.49436 * 20 19 18 22 22 F 1.35105 * 120.44241 * 179.77313 * 21 20 19 23 23 C 1.38418 * 119.11279 * 359.75002 * 21 20 19 24 24 N 1.31844 * 119.59369 * 305.00212 * 18 17 15 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 0.97004 * 120.00188 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99644 * 180.02562 * 9 8 6 32 32 H 0.97000 * 119.99634 * 265.00306 * 14 2 1 33 33 H 1.08996 * 109.47353 * 300.00507 * 17 15 14 34 34 H 1.09006 * 109.47337 * 60.00072 * 17 15 14 35 35 H 1.08007 * 120.40116 * 0.02562 * 19 18 17 36 36 H 1.08003 * 120.80169 * 180.22172 * 20 19 18 37 37 H 1.07998 * 119.63750 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2074 7 1 3.6467 -1.8430 3.0522 8 6 5.5672 -1.5380 2.1515 9 7 6.2243 -2.1262 3.1286 10 14 6.4961 -0.8379 0.6900 11 1 6.8578 0.5760 0.9644 12 1 7.7316 -1.6298 0.4632 13 1 5.6373 -0.9032 -0.5198 14 7 2.0184 -0.6906 -1.1962 15 6 2.1472 -0.0183 -2.3570 16 8 1.8592 1.1585 -2.4115 17 6 2.6501 -0.7285 -3.5873 18 6 2.7001 0.2396 -4.7412 19 6 3.8849 0.4196 -5.4303 20 6 3.9203 1.3084 -6.4930 21 6 2.7580 1.9953 -6.8186 22 9 2.7473 2.8751 -7.8439 23 6 1.6107 1.7662 -6.0790 24 7 1.6148 0.9085 -5.0774 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -0.1583 2.1369 29 1 1.6053 -1.7198 1.2952 30 1 3.9825 -0.4622 0.4320 31 1 7.1910 -2.1958 3.0897 32 1 2.2491 -1.6318 -1.1525 33 1 3.6494 -1.1204 -3.3977 34 1 1.9779 -1.5509 -3.8325 35 1 4.7710 -0.1289 -5.1465 36 1 4.8310 1.4665 -7.0516 37 1 0.7022 2.2961 -6.3246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754273434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = -59.176063 kcal Electronic energy + Delta-G solvation = -21366.301166 eV Core-core repulsion = 17864.493152 eV Total energy + Delta-G solvation = -3501.808014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01827 -41.48229 -40.37923 -37.76651 -35.47044 -33.94053 -33.49865 -33.20402 -31.75849 -28.82761 -27.61302 -25.01075 -24.28073 -23.74577 -22.26006 -21.34082 -19.77548 -18.70523 -18.48442 -17.85491 -17.58085 -16.84018 -16.72447 -16.65922 -16.08250 -15.75842 -15.14697 -15.00151 -14.91509 -14.73079 -14.34234 -14.00895 -13.97521 -13.85564 -13.68909 -13.35354 -13.02815 -12.90831 -12.87461 -12.54021 -12.14731 -11.87638 -11.70316 -11.05605 -10.95885 -10.86510 -10.54138 -10.02284 -9.85678 -9.30699 -8.01683 -5.35671 -0.16446 0.11881 1.35695 1.42402 1.48602 1.73709 2.19101 2.48893 2.66611 2.95673 3.24544 3.30562 3.56295 3.60724 3.76565 3.84267 3.92961 4.05086 4.28703 4.32357 4.43925 4.49068 4.61001 4.74083 4.82446 4.85552 4.87792 4.95225 4.95937 5.13899 5.32120 5.58708 5.61194 5.77279 6.21623 6.64137 6.85543 7.08009 7.34528 7.82938 8.02300 9.19653 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.004226 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.863006 B = 6623.356338 C = 7757.664708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.140 3.860 3 H 0.063 0.937 4 C 0.149 3.851 5 N -0.756 5.756 6 C -0.233 4.233 7 H 0.060 0.940 8 C -0.061 4.061 9 N -0.983 5.983 10 Si 0.951 3.049 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.242 1.242 14 N -0.714 5.714 15 C 0.514 3.486 16 O -0.572 6.572 17 C -0.091 4.091 18 C 0.117 3.883 19 C -0.134 4.134 20 C -0.106 4.106 21 C 0.032 3.968 22 F -0.135 7.135 23 C 0.066 3.934 24 N -0.461 5.461 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.365 0.635 31 H 0.258 0.742 32 H 0.413 0.587 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.324 3.093 -21.838 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.081 0.919 4 C 0.022 3.978 5 N -0.402 5.402 6 C -0.364 4.364 7 H 0.078 0.922 8 C -0.253 4.253 9 N -0.633 5.633 10 Si 0.778 3.222 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.166 1.166 14 N -0.367 5.367 15 C 0.301 3.699 16 O -0.450 6.450 17 C -0.130 4.130 18 C -0.022 4.022 19 C -0.154 4.154 20 C -0.132 4.132 21 C 0.011 3.989 22 F -0.114 7.114 23 C -0.093 4.093 24 N -0.169 5.169 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.199 0.801 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.194 0.806 36 H 0.193 0.807 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.308 3.707 -21.226 23.471 hybrid contribution 1.644 0.424 -0.849 1.898 sum -7.664 4.131 -22.075 23.730 Atomic orbital electron populations 1.21983 0.93006 1.03100 1.02406 1.21060 0.95312 0.96264 0.83874 0.91860 1.21106 0.82854 0.98558 0.95234 1.42667 1.03143 1.70914 1.23458 1.19041 0.90084 1.28273 0.99028 0.92190 1.25473 0.97283 1.01714 1.00826 1.69882 1.07489 1.50810 1.35166 0.85475 0.78465 0.77290 0.80957 1.21851 1.21888 1.16634 1.46009 1.66912 1.14795 1.08946 1.20804 0.77051 0.87068 0.84989 1.90698 1.51237 1.17716 1.85395 1.20744 1.06723 0.97530 0.88049 1.21011 0.89631 0.95592 0.95924 1.22250 0.99473 0.98647 0.94991 1.21968 0.98349 0.95099 0.97811 1.18966 0.97048 0.93473 0.89444 1.91508 1.97166 1.66384 1.56336 1.23109 0.98200 0.96625 0.91383 1.67470 1.30907 1.05819 1.12725 0.90842 0.90561 0.93092 0.94240 0.93596 0.80125 0.93344 0.75076 0.84245 0.84280 0.80592 0.80749 0.80665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.48 71.98 0.68 -2.84 16 2 C 0.14 4.13 2.73 44.99 0.12 4.25 16 3 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 4 C 0.15 5.16 5.82 86.38 0.50 5.66 16 5 N -0.76 -33.18 5.24 -343.45 -1.80 -34.98 16 6 C -0.23 -12.78 10.47 84.03 0.88 -11.89 16 7 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 8 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 9 N -0.98 -61.56 13.97 21.65 0.30 -61.26 16 10 Si 0.95 43.72 27.74 68.60 1.90 45.62 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.24 -9.56 6.52 99.48 0.65 -8.91 16 14 N -0.71 -18.78 4.52 -442.54 -2.00 -20.78 16 15 C 0.51 14.17 7.73 87.66 0.68 14.85 16 16 O -0.57 -20.64 15.00 -3.01 -0.05 -20.68 16 17 C -0.09 -1.69 6.10 29.10 0.18 -1.51 16 18 C 0.12 2.55 5.76 42.56 0.25 2.79 16 19 C -0.13 -2.22 9.71 22.35 0.22 -2.01 16 20 C -0.11 -1.71 10.16 22.51 0.23 -1.48 16 21 C 0.03 0.64 7.35 22.47 0.17 0.80 16 22 F -0.14 -2.70 17.28 44.97 0.78 -1.92 16 23 C 0.07 1.46 11.17 84.73 0.95 2.41 16 24 N -0.46 -11.94 9.22 -183.71 -1.69 -13.63 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.37 15.58 5.20 -92.71 -0.48 15.10 16 31 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.41 9.36 8.60 -92.71 -0.80 8.56 16 33 H 0.14 1.84 7.87 -2.39 -0.02 1.82 16 34 H 0.14 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.18 1.76 7.95 -2.91 -0.02 1.74 16 36 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -75.13 324.21 2.52 -72.61 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.23 Total: 27.02 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.31 Total: 7.99 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -5.19 Total: -130.65 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.90 Total: 45.62 kcal Total: -75.13 2.52 -72.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754273434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.435 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds