Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46964 * 2 1 4 4 C 1.53003 * 109.47069 * 239.99996 * 2 1 3 5 5 N 1.46497 * 109.47176 * 184.99913 * 4 2 1 6 6 C 1.46498 * 119.99884 * 270.00018 * 5 4 2 7 7 C 1.36935 * 120.00044 * 90.00029 * 5 4 2 8 8 H 1.08000 * 120.00092 * 22.34191 * 7 5 4 9 9 C 1.38813 * 119.99901 * 202.33738 * 7 5 4 10 10 N 1.31620 * 120.00075 * 11.37092 * 9 7 5 11 11 Si 1.86800 * 119.99876 * 191.36422 * 9 7 5 12 12 H 1.48501 * 109.47166 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47098 * 120.00355 * 11 9 7 14 14 H 1.48504 * 109.47123 * 240.00470 * 11 9 7 15 15 N 1.46499 * 109.47249 * 120.00034 * 2 1 3 16 16 C 1.34778 * 120.00221 * 275.00298 * 15 2 1 17 17 O 1.21534 * 119.99638 * 359.97438 * 16 15 2 18 18 C 1.47997 * 119.99996 * 180.02562 * 16 15 2 19 19 N 1.32809 * 119.75501 * 359.97438 * 18 16 15 20 20 C 1.31431 * 121.67032 * 179.75207 * 19 18 16 21 21 C 1.38679 * 120.97446 * 0.53692 * 20 19 18 22 22 C 1.38452 * 119.40109 * 359.47380 * 21 20 19 23 23 C 1.38964 * 118.46375 * 0.25267 * 22 21 20 24 24 F 1.35099 * 120.50690 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47514 * 60.00164 * 1 2 3 26 26 H 1.09012 * 109.47008 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47138 * 299.99527 * 1 2 3 28 28 H 1.09001 * 109.47004 * 305.00303 * 4 2 1 29 29 H 1.09002 * 109.47075 * 64.99555 * 4 2 1 30 30 H 1.09002 * 109.47007 * 94.22767 * 6 5 4 31 31 H 1.09002 * 109.47533 * 214.21911 * 6 5 4 32 32 H 1.09001 * 109.47400 * 334.22933 * 6 5 4 33 33 H 0.96999 * 119.99950 * 179.97438 * 10 9 7 34 34 H 0.97007 * 119.99795 * 95.00105 * 15 2 1 35 35 H 1.07994 * 119.51133 * 180.28744 * 20 19 18 36 36 H 1.08003 * 120.30298 * 179.75088 * 21 20 19 37 37 H 1.07993 * 120.77129 * 180.27229 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3342 0.2340 -1.7613 7 6 4.0849 -1.9158 -0.6024 8 1 3.5339 -2.8399 -0.5087 9 6 5.3863 -1.8325 -0.1265 10 7 5.9794 -0.6612 -0.0338 11 14 6.2956 -3.3828 0.3826 12 1 5.4147 -4.5615 0.1829 13 1 7.5189 -3.5337 -0.4457 14 1 6.6763 -3.2857 1.8147 15 7 2.0184 -0.6906 1.1961 16 6 2.1470 -0.0183 2.3572 17 8 1.8584 1.1610 2.4116 18 6 2.6409 -0.7159 3.5654 19 7 2.9554 -2.0046 3.5002 20 6 3.4020 -2.6598 4.5483 21 6 3.5523 -2.0284 5.7739 22 6 3.2370 -0.6853 5.8897 23 6 2.7723 -0.0146 4.7649 24 9 2.4529 1.2964 4.8312 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6053 -1.7198 -1.2952 29 1 1.7515 -0.1584 -2.1370 30 1 4.6022 0.9455 -0.9802 31 1 5.2404 -0.2027 -2.1812 32 1 3.7809 0.7484 -2.5471 33 1 6.8886 -0.6030 0.2991 34 1 2.2491 -1.6318 1.1525 35 1 3.6516 -3.7063 4.4548 36 1 3.9164 -2.5783 6.6292 37 1 3.3499 -0.1706 6.8324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -17.137728 kcal Electronic energy + Delta-G solvation = -22799.957686 eV Core-core repulsion = 19299.972591 eV Total energy + Delta-G solvation = -3499.985095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.72228 -40.16029 -38.60909 -36.23597 -33.94120 -32.69296 -31.31351 -30.83613 -29.72786 -26.13469 -25.55755 -24.78627 -23.40631 -21.87512 -20.70044 -19.64763 -17.87443 -17.42635 -16.95517 -16.58964 -15.74646 -15.34529 -15.25827 -14.79134 -14.26930 -13.96011 -13.69726 -13.46321 -13.22797 -13.07479 -12.86275 -12.78706 -12.37314 -12.13401 -11.82808 -11.36023 -11.24816 -10.83169 -10.66344 -10.37447 -10.23041 -9.98539 -9.93834 -9.87262 -9.78020 -9.22087 -8.90556 -8.52385 -8.20559 -6.73265 -5.69077 -3.14651 0.66742 1.07736 3.12802 3.36641 3.43970 3.45717 3.60354 4.06336 4.16951 4.37048 4.51457 4.64835 4.82535 4.94406 5.37745 5.39626 5.55793 5.66729 5.72542 5.77689 5.86241 5.95644 6.02785 6.20672 6.29432 6.48175 6.54394 6.59331 6.78642 6.92229 7.29327 7.42573 7.75431 7.77184 7.84395 8.34423 8.41541 8.91270 9.25630 9.89377 10.38669 11.35512 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.008377 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.162111 B = 3341.688259 C = 4659.957890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.252 4.252 8 H 0.068 0.932 9 C 0.009 3.991 10 N -0.901 5.901 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.292 1.292 14 H -0.292 1.292 15 N -0.661 5.661 16 C 0.566 3.434 17 O -0.545 6.545 18 C 0.066 3.934 19 N -0.418 5.418 20 C 0.087 3.913 21 C -0.130 4.130 22 C -0.123 4.123 23 C 0.102 3.898 24 F -0.108 7.108 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.044 0.956 32 H -0.004 1.004 33 H 0.250 0.750 34 H 0.415 0.585 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -3.186 8.979 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.381 4.381 8 H 0.086 0.914 9 C -0.190 4.190 10 N -0.546 5.546 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.219 1.219 14 H -0.219 1.219 15 N -0.310 5.310 16 C 0.350 3.650 17 O -0.423 6.423 18 C -0.074 4.074 19 N -0.128 5.128 20 C -0.074 4.074 21 C -0.150 4.150 22 C -0.149 4.149 23 C 0.079 3.921 24 F -0.086 7.086 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.060 0.940 34 H 0.253 0.747 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.345 -2.681 8.164 11.305 hybrid contribution 1.043 -0.554 1.349 1.793 sum -6.302 -3.235 9.513 11.861 Atomic orbital electron populations 1.22158 0.96689 1.01368 1.01622 1.21938 0.91964 0.98503 0.86880 0.90382 1.21200 0.86050 0.97953 0.93443 1.43922 0.98874 1.22684 1.66586 1.20795 0.92963 0.90465 0.93822 1.19123 0.97049 0.89414 1.32545 0.91423 1.24966 0.98699 0.96092 0.99242 1.70092 1.13214 1.21572 1.49722 0.86279 0.79873 0.83195 0.77821 1.20165 1.21934 1.21896 1.45565 1.62804 1.14960 1.07646 1.17546 0.78633 0.85952 0.82915 1.90771 1.51814 1.14789 1.84915 1.21641 1.01057 0.90964 0.93737 1.67724 1.07436 1.06614 1.31045 1.22916 0.95858 1.00812 0.87788 1.22233 0.98819 0.94183 0.99781 1.21630 0.99641 0.95409 0.98261 1.18693 0.99043 0.79811 0.94581 1.91600 1.89428 1.30943 1.96660 0.92089 0.92907 0.92943 0.93227 0.92817 0.95458 0.93689 0.98569 0.94001 0.74747 0.81562 0.83572 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 4 C 0.14 2.81 5.36 -4.04 -0.02 2.78 16 5 N -0.60 -14.58 2.82 -181.12 -0.51 -15.09 16 6 C 0.16 4.09 9.01 59.85 0.54 4.62 16 7 C -0.25 -6.57 8.02 -15.06 -0.12 -6.69 16 8 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 9 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 10 N -0.90 -26.18 10.59 55.49 0.59 -25.59 16 11 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 N -0.66 -13.84 4.48 -54.70 -0.24 -14.09 16 16 C 0.57 12.43 7.77 -12.26 -0.10 12.33 16 17 O -0.54 -13.13 14.98 5.34 0.08 -13.05 16 18 C 0.07 1.28 6.75 -82.95 -0.56 0.72 16 19 N -0.42 -7.45 9.54 -9.76 -0.09 -7.54 16 20 C 0.09 1.17 11.18 -17.56 -0.20 0.97 16 21 C -0.13 -1.43 10.11 -39.34 -0.40 -1.82 16 22 C -0.12 -1.54 10.16 -39.23 -0.40 -1.94 16 23 C 0.10 1.74 7.32 -38.82 -0.28 1.46 16 24 F -0.11 -2.02 15.55 2.25 0.04 -1.99 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 29 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 30 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 31 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 32 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.41 8.78 6.73 -40.82 -0.27 8.50 16 35 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 319.41 15.07 4.81 4.81 Total: -1.00 -32.62 319.41 -6.57 -39.19 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.74 Total: 4.38 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -1.47 Total: 12.49 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.26 Total: -62.31 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.62 -6.57 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.048 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds