Wall clock time and date at job start Tue Mar 31 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47078 * 2 1 4 4 H 1.09002 * 109.47419 * 304.99976 * 3 2 1 5 5 C 1.50707 * 109.46932 * 185.00064 * 3 2 1 6 6 H 1.08000 * 119.99561 * 239.99680 * 5 3 2 7 7 C 1.37871 * 120.00071 * 60.00030 * 5 3 2 8 8 N 1.31516 * 120.00220 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00150 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47196 * 59.99793 * 9 7 5 11 11 H 1.48499 * 109.47233 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46943 * 299.99873 * 9 7 5 13 13 N 1.46896 * 109.47249 * 65.00176 * 3 2 1 14 14 C 1.46955 * 111.00233 * 179.97438 * 13 3 2 15 15 C 1.53049 * 109.36962 * 176.80960 * 14 13 3 16 16 N 1.46956 * 109.37889 * 58.38792 * 15 14 13 17 17 C 1.38613 * 110.99910 * 176.82063 * 16 15 14 18 18 N 1.29683 * 124.94924 * 359.70599 * 17 16 15 19 19 C 1.32123 * 116.86933 * 179.80997 * 18 17 16 20 20 C 1.33330 * 114.57530 * 0.46573 * 19 18 17 21 21 S 1.70966 * 124.95103 * 179.97438 * 17 16 15 22 22 C 1.46957 * 110.88202 * 300.71439 * 16 15 14 23 23 C 1.46955 * 111.00423 * 56.19843 * 13 3 2 24 24 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00147 * 1 2 3 26 26 H 1.08997 * 109.46829 * 59.99617 * 1 2 3 27 27 H 1.09000 * 109.47044 * 239.99853 * 2 1 3 28 28 H 1.09003 * 109.46932 * 119.99667 * 2 1 3 29 29 H 0.96995 * 120.00302 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.49150 * 56.83886 * 14 13 3 31 31 H 1.08999 * 109.50586 * 296.79217 * 14 13 3 32 32 H 1.09002 * 109.49200 * 178.36943 * 15 14 13 33 33 H 1.09002 * 109.48985 * 298.41362 * 15 14 13 34 34 H 1.08001 * 122.71141 * 180.22144 * 19 18 17 35 35 H 1.08002 * 125.94979 * 179.74786 * 20 19 18 36 36 H 1.08997 * 109.47347 * 299.31758 * 22 16 15 37 37 H 1.09002 * 109.50396 * 179.27890 * 22 16 15 38 38 H 1.09002 * 109.48806 * 303.15815 * 23 13 3 39 39 H 1.09002 * 109.48581 * 63.19765 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5967 0.1451 -0.2343 11 1 6.3979 0.2155 -2.6498 12 1 6.5006 2.2798 -1.3808 13 7 1.6515 2.0992 1.2552 14 6 2.1260 3.4896 1.2910 15 6 1.6341 4.1609 2.5754 16 7 2.1268 3.4092 3.7381 17 6 1.7597 4.0291 4.9223 18 7 1.0779 5.1292 5.0046 19 6 0.8130 5.5780 6.2187 20 6 1.3016 4.8273 7.2063 21 16 2.1455 3.4584 6.4870 22 6 1.6526 2.0187 3.7020 23 6 2.1450 1.3478 2.4176 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0610 -2.9499 30 1 1.7375 4.0289 0.4270 31 1 3.2157 3.5029 1.2680 32 1 2.0091 5.1835 2.6180 33 1 0.5442 4.1726 2.5852 34 1 0.2497 6.4821 6.3967 35 1 1.1980 5.0241 8.2632 36 1 0.5629 2.0057 3.7249 37 1 2.0408 1.4793 4.5660 38 1 1.7704 0.3250 2.3753 39 1 3.2349 1.3365 2.4072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:43 Heat of formation + Delta-G solvation = 65.555746 kcal Electronic energy + Delta-G solvation = -20492.428292 eV Core-core repulsion = 17562.242231 eV Total energy + Delta-G solvation = -2930.186061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11738 -38.49204 -35.93324 -32.71822 -31.40846 -30.56267 -29.37279 -27.39499 -25.53446 -23.83976 -23.45459 -22.50547 -20.54410 -19.37171 -18.89235 -18.30539 -16.49399 -16.13736 -15.21991 -15.05600 -14.71245 -14.53327 -14.26851 -13.95046 -13.67752 -13.18474 -13.04175 -12.58426 -12.29346 -11.85161 -11.49097 -11.47428 -11.22338 -10.93490 -10.81732 -10.72196 -10.66213 -10.49169 -9.97036 -9.84581 -9.72864 -9.56506 -9.41460 -9.26227 -9.12375 -8.37831 -8.02252 -7.20801 -6.00902 -4.14429 0.80901 1.22168 1.79321 2.84634 3.27639 3.32889 3.36036 3.73722 4.38541 4.60921 4.92546 5.18079 5.22789 5.24094 5.41749 5.50427 5.62085 5.70591 5.91214 5.97416 5.99585 6.17653 6.31861 6.41322 6.50903 6.63176 6.65784 6.75437 6.78959 7.00050 7.06271 7.15888 7.25570 7.58015 7.72160 7.83184 7.91004 8.10039 8.25404 8.40080 8.94617 9.53450 10.98332 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.004643 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.301177 B = 6029.544528 C = 6490.964389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.215 3.785 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.535 5.535 14 C 0.061 3.939 15 C 0.074 3.926 16 N -0.447 5.447 17 C 0.242 3.758 18 N -0.526 5.526 19 C 0.066 3.934 20 C -0.295 4.295 21 S 0.122 5.878 22 C 0.061 3.939 23 C 0.059 3.941 24 H 0.026 0.974 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 4.889 14.828 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.109 3.891 4 H 0.059 0.941 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.068 4.068 15 C -0.054 4.054 16 N -0.168 5.168 17 C -0.127 4.127 18 N -0.248 5.248 19 C -0.086 4.086 20 C -0.436 4.436 21 S 0.373 5.627 22 C -0.066 4.066 23 C -0.070 4.070 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.189 0.811 35 H 0.190 0.810 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.236 4.141 14.467 15.633 hybrid contribution 0.866 0.898 0.047 1.248 sum -3.370 5.039 14.514 15.730 Atomic orbital electron populations 1.21720 0.98796 0.98474 1.00629 1.21677 0.92273 0.99211 1.02169 1.19280 0.93196 0.91060 0.85584 0.94083 1.21688 0.92738 1.38304 1.05614 0.92486 1.24886 0.97786 0.94949 0.95640 1.69855 1.34913 1.38171 1.09414 0.86743 0.86205 0.78261 0.77312 1.20349 1.21281 1.20343 1.62705 1.58120 1.01209 1.03960 1.22021 0.99435 0.90725 0.94660 1.22269 0.98977 0.96705 0.87484 1.59219 1.54167 1.04264 0.99129 1.25347 0.95469 0.95044 0.96871 1.66886 1.17519 1.14096 1.26289 1.21532 1.00316 1.00889 0.85861 1.26706 1.10866 1.01420 1.04592 1.83897 1.53576 1.26520 0.98687 1.22607 0.98976 0.84587 1.00445 1.22046 0.99279 0.97471 0.88163 0.95534 0.93547 0.94074 0.88785 0.94724 0.92814 0.90516 0.93098 0.90075 0.92637 0.81121 0.80987 0.92755 0.90526 0.89641 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 37.16 0.36 -2.34 16 2 C -0.12 -2.59 4.94 -26.73 -0.13 -2.72 16 3 C 0.21 5.05 1.82 -68.87 -0.13 4.93 16 4 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 5 C -0.54 -14.01 7.12 -34.44 -0.25 -14.26 16 6 H 0.06 1.49 5.80 -52.49 -0.30 1.19 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.24 11.29 55.43 0.63 -23.62 16 9 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.54 -10.75 4.19 -227.88 -0.96 -11.71 16 14 C 0.06 1.16 5.25 -3.77 -0.02 1.14 16 15 C 0.07 1.25 4.94 -3.77 -0.02 1.23 16 16 N -0.45 -7.30 4.78 -175.22 -0.84 -8.14 16 17 C 0.24 3.66 6.73 -87.68 -0.59 3.07 16 18 N -0.53 -7.97 9.50 -15.21 -0.14 -8.11 16 19 C 0.07 0.79 11.34 -19.14 -0.22 0.57 16 20 C -0.30 -3.12 11.34 29.02 0.33 -2.79 16 21 S 0.12 1.48 22.33 -107.50 -2.40 -0.92 16 22 C 0.06 0.94 5.46 -3.77 -0.02 0.92 16 23 C 0.06 1.09 4.92 -3.77 -0.02 1.07 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 28 H 0.03 0.75 6.00 -51.93 -0.31 0.44 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.05 1.07 6.58 -51.93 -0.34 0.73 16 32 H 0.08 1.34 7.97 -51.93 -0.41 0.92 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.04 7.44 -51.93 -0.39 0.66 16 38 H 0.09 1.55 5.95 -51.93 -0.31 1.24 16 39 H 0.05 1.04 6.81 -51.93 -0.35 0.69 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -27.46 315.44 -10.42 -37.87 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.65 Total: 1.52 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.79 Total: -7.43 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.31 Total: -51.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.40 Total: -0.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.46 -10.42 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.430 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds