Wall clock time and date at job start Tue Mar 31 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33622 * 125.80819 * 2 1 4 4 C 1.34218 * 110.92866 * 180.15180 * 3 2 1 5 5 C 1.50701 * 125.43091 * 179.87055 * 4 3 2 6 6 N 1.46897 * 109.47424 * 269.69730 * 5 4 3 7 7 C 1.46893 * 111.00087 * 170.00178 * 6 5 4 8 8 C 1.50700 * 109.47102 * 201.04424 * 7 6 5 9 9 H 1.08001 * 120.00256 * 0.84933 * 8 7 6 10 10 C 1.37878 * 120.00153 * 180.84581 * 8 7 6 11 11 N 1.31514 * 119.99728 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00133 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47254 * 89.99980 * 12 10 8 14 14 H 1.48497 * 109.47345 * 210.00128 * 12 10 8 15 15 H 1.48501 * 109.47118 * 329.99900 * 12 10 8 16 16 C 1.46905 * 110.99955 * 293.95504 * 6 5 4 17 17 C 1.52992 * 109.47016 * 170.87557 * 16 6 5 18 18 C 1.53006 * 109.46760 * 290.87457 * 16 6 5 19 19 C 1.34156 * 109.14142 * 359.61287 * 4 3 2 20 20 C 1.36499 * 125.81167 * 179.72336 * 2 1 3 21 21 C 1.47234 * 127.19965 * 359.97438 * 20 2 1 22 22 O 1.21540 * 119.99860 * 359.97438 * 21 20 2 23 23 O 1.34764 * 120.00185 * 179.97438 * 21 20 2 24 24 H 1.08995 * 109.47364 * 270.26508 * 1 2 3 25 25 H 1.08993 * 109.47167 * 30.27777 * 1 2 3 26 26 H 1.09002 * 109.46675 * 150.26893 * 1 2 3 27 27 H 1.09005 * 109.46883 * 149.69366 * 5 4 3 28 28 H 1.09003 * 109.46704 * 29.69566 * 5 4 3 29 29 H 1.09009 * 109.47032 * 321.04070 * 7 6 5 30 30 H 1.08997 * 109.47504 * 81.04314 * 7 6 5 31 31 H 0.97005 * 119.99688 * 179.97438 * 11 10 8 32 32 H 1.09005 * 109.47099 * 50.87016 * 16 6 5 33 33 H 1.09003 * 109.47256 * 186.81748 * 17 16 6 34 34 H 1.08996 * 109.47452 * 306.81522 * 17 16 6 35 35 H 1.08998 * 109.47397 * 66.82090 * 17 16 6 36 36 H 1.08992 * 109.47145 * 299.99826 * 18 16 6 37 37 H 1.09001 * 109.47086 * 60.00195 * 18 16 6 38 38 H 1.09003 * 109.46686 * 180.02562 * 18 16 6 39 39 H 1.07998 * 127.02638 * 180.25003 * 19 4 3 40 40 H 0.96704 * 117.00199 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7390 -0.0033 5 6 4.7456 1.7014 -0.0071 6 7 5.1234 2.0077 -1.3932 7 6 6.0862 3.1159 -1.4439 8 6 6.0619 3.7401 -2.8153 9 1 5.3878 3.3612 -3.5693 10 6 6.9002 4.7951 -3.1076 11 7 7.7213 5.2562 -2.1896 12 14 6.8696 5.5692 -4.8073 13 1 5.8780 6.6744 -4.8301 14 1 8.2159 6.1055 -5.1313 15 1 6.4906 4.5433 -5.8118 16 6 5.6553 0.8168 -2.0693 17 6 5.8234 1.1099 -3.5614 18 6 7.0127 0.4512 -1.4652 19 6 3.6857 -0.5988 0.0030 20 6 2.3057 -1.1069 0.0053 21 6 1.8755 -2.5150 0.0127 22 8 0.6913 -2.7886 0.0150 23 8 2.7947 -3.5004 0.0168 24 1 -0.3634 0.0048 1.0276 25 1 -0.3633 0.8874 -0.5181 26 1 -0.3633 -0.8924 -0.5097 27 1 5.5932 1.2510 0.5095 28 1 4.4564 2.6207 0.5022 29 1 5.8175 3.8650 -0.6990 30 1 7.0868 2.7378 -1.2345 31 1 8.3114 5.9982 -2.3953 32 1 4.9633 -0.0151 -1.9380 33 1 6.1018 0.1939 -4.0826 34 1 4.8839 1.4866 -3.9658 35 1 6.6041 1.8579 -3.6992 36 1 7.7047 1.2830 -1.5965 37 1 6.8929 0.2424 -0.4021 38 1 7.4076 -0.4321 -1.9672 39 1 4.5938 -1.1833 0.0061 40 1 2.4642 -4.4092 0.0212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042529490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:37 Heat of formation + Delta-G solvation = -71.136016 kcal Electronic energy + Delta-G solvation = -22515.108902 eV Core-core repulsion = 19103.949820 eV Total energy + Delta-G solvation = -3411.159082 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.58634 -39.91423 -37.92562 -36.17526 -33.09597 -32.92139 -32.29982 -30.82900 -28.59087 -26.83397 -26.16008 -24.72788 -23.39020 -22.31884 -21.52537 -19.52432 -18.81203 -18.04143 -16.83702 -16.53139 -16.16193 -15.59578 -15.47441 -15.15516 -14.66378 -14.21999 -14.00359 -13.35623 -13.34386 -13.21384 -12.94261 -12.87211 -12.37117 -12.22458 -11.84474 -11.68145 -11.53050 -11.32055 -11.15677 -10.87087 -10.76980 -10.71289 -10.62808 -10.37799 -10.17694 -9.76730 -9.45952 -9.10442 -8.45922 -8.34378 -7.31670 -6.03452 -4.00796 1.13014 2.06509 2.68972 3.03010 3.10537 3.31575 3.38252 3.41522 4.40354 4.48326 4.72555 4.93982 5.13177 5.20730 5.31141 5.36523 5.54340 5.56435 5.60606 5.67478 5.82458 5.84100 6.00027 6.01507 6.06900 6.30160 6.37001 6.41892 6.47644 6.54636 6.66921 6.91665 7.10320 7.20200 7.36231 7.44863 7.80708 7.83187 8.06769 8.13451 8.48912 9.03945 9.59677 11.07009 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.004124 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.232976 B = 6787.075228 C = 7095.579514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.089 3.911 3 O -0.157 6.157 4 C 0.027 3.973 5 C 0.122 3.878 6 N -0.527 5.527 7 C 0.185 3.815 8 C -0.499 4.499 9 H 0.072 0.928 10 C 0.053 3.947 11 N -0.900 5.900 12 Si 0.894 3.106 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.273 1.273 16 C 0.083 3.917 17 C -0.142 4.142 18 C -0.188 4.188 19 C -0.175 4.175 20 C -0.242 4.242 21 C 0.563 3.437 22 O -0.526 6.526 23 O -0.509 6.509 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.158 0.842 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -13.410 5.407 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 O -0.052 6.052 4 C -0.022 4.022 5 C -0.006 4.006 6 N -0.251 5.251 7 C 0.061 3.939 8 C -0.537 4.537 9 H 0.090 0.910 10 C -0.148 4.148 11 N -0.540 5.540 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.026 4.026 17 C -0.199 4.199 18 C -0.246 4.246 19 C -0.195 4.195 20 C -0.244 4.244 21 C 0.409 3.591 22 O -0.418 6.418 23 O -0.320 6.320 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.176 0.824 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.203 -12.463 5.174 16.333 hybrid contribution 0.727 -0.558 -0.422 1.009 sum -8.475 -13.021 4.753 16.247 Atomic orbital electron populations 1.20632 0.83864 1.05244 1.04341 1.22749 0.93988 0.83225 0.96498 1.83806 1.17136 1.34102 1.70137 1.22552 0.82080 0.94649 1.02931 1.20641 0.89681 0.96500 0.93801 1.62413 1.44981 1.07226 1.10522 1.19932 0.88913 0.86800 0.98295 1.21328 1.20330 1.14615 0.97471 0.90989 1.24970 0.95756 0.96879 0.97163 1.69953 1.24008 1.26633 1.33435 0.86562 0.77106 0.79651 0.84520 1.20741 1.21438 1.19780 1.21570 0.93165 0.92218 0.95625 1.22107 1.03782 1.00501 0.93511 1.22498 1.00413 1.02042 0.99683 1.22529 0.96159 0.93269 1.07516 1.19987 0.94370 0.90024 1.20062 1.19681 0.82786 0.85241 0.71343 1.90853 1.18317 1.84539 1.48083 1.84612 1.42001 1.19456 1.85887 0.89252 0.89814 0.87682 0.91785 0.89217 0.95579 0.97069 0.93008 0.91882 0.95133 0.92779 0.88893 0.90567 0.93827 0.93173 0.82426 0.73119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.89 36.01 0.36 -0.53 16 2 C 0.09 1.25 7.38 -34.94 -0.26 0.99 16 3 O -0.16 -2.51 10.52 7.72 0.08 -2.43 16 4 C 0.03 0.43 6.22 -35.75 -0.22 0.21 16 5 C 0.12 2.09 5.34 -4.98 -0.03 2.06 16 6 N -0.53 -10.72 4.46 -229.51 -1.02 -11.75 16 7 C 0.18 4.46 4.52 -4.98 -0.02 4.43 16 8 C -0.50 -13.14 6.71 -34.44 -0.23 -13.37 16 9 H 0.07 1.90 5.78 -52.49 -0.30 1.59 16 10 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 11 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 12 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.08 1.53 2.77 -67.71 -0.19 1.34 16 17 C -0.14 -2.76 7.75 37.15 0.29 -2.47 16 18 C -0.19 -3.20 8.54 37.16 0.32 -2.88 16 19 C -0.17 -2.58 9.29 -37.45 -0.35 -2.92 16 20 C -0.24 -3.48 6.32 -103.30 -0.65 -4.13 16 21 C 0.56 7.41 8.33 34.39 0.29 7.70 16 22 O -0.53 -7.51 15.64 -19.30 -0.30 -7.82 16 23 O -0.51 -5.28 13.34 -40.67 -0.54 -5.82 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 1.13 6.49 -51.93 -0.34 0.80 16 27 H 0.06 1.01 6.36 -51.93 -0.33 0.68 16 28 H 0.09 1.53 7.82 -51.93 -0.41 1.13 16 29 H 0.03 0.68 7.71 -51.92 -0.40 0.28 16 30 H 0.01 0.29 5.38 -51.93 -0.28 0.01 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.10 5.81 -51.93 -0.30 0.80 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 1.09 7.47 -51.93 -0.39 0.70 16 35 H 0.09 2.05 5.72 -51.93 -0.30 1.75 16 36 H 0.08 1.50 5.99 -51.93 -0.31 1.19 16 37 H 0.04 0.67 6.54 -51.93 -0.34 0.33 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.16 2.12 8.05 -52.49 -0.42 1.70 16 40 H 0.41 2.14 9.11 45.56 0.42 2.56 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -30.67 325.69 -6.49 -37.16 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.53 Total: 2.86 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.80 Total: -8.23 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.29 Total: -36.71 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.76 Total: -16.07 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.67 -6.49 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.978 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds