Wall clock time and date at job start Tue Mar 31 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40314 * 126.64908 * 2 1 4 4 C 1.35168 * 107.12424 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.60661 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47545 * 81.72026 * 5 4 3 7 7 C 1.46900 * 111.00219 * 202.50582 * 6 5 4 8 8 C 1.50698 * 109.47373 * 164.44105 * 7 6 5 9 9 H 1.08003 * 120.00048 * 4.64654 * 8 7 6 10 10 C 1.37876 * 119.99989 * 184.65198 * 8 7 6 11 11 N 1.31509 * 120.00292 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99870 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47544 * 59.99276 * 12 10 8 14 14 H 1.48495 * 109.47191 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46776 * 299.99383 * 12 10 8 16 16 C 1.46892 * 110.99931 * 78.54782 * 6 5 4 17 17 C 1.53004 * 109.47569 * 285.97364 * 16 6 5 18 18 C 1.53002 * 109.47163 * 45.97981 * 16 6 5 19 19 O 1.33912 * 108.78320 * 0.26187 * 4 3 2 20 20 C 1.34937 * 109.38006 * 359.56637 * 19 4 3 21 21 C 1.46474 * 125.99593 * 180.12928 * 20 19 4 22 22 O 1.21619 * 119.99982 * 180.34859 * 21 20 19 23 23 O 1.34896 * 119.99712 * 0.35504 * 21 20 19 24 24 H 1.08996 * 109.47810 * 89.99111 * 1 2 3 25 25 H 1.08998 * 109.47091 * 210.00352 * 1 2 3 26 26 H 1.09005 * 109.47143 * 329.99851 * 1 2 3 27 27 H 1.07999 * 126.43655 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47327 * 201.71915 * 5 4 3 29 29 H 1.09009 * 109.47046 * 321.71755 * 5 4 3 30 30 H 1.09001 * 109.46945 * 284.44384 * 7 6 5 31 31 H 1.09000 * 109.46888 * 44.43953 * 7 6 5 32 32 H 0.96998 * 120.00533 * 180.02562 * 11 10 8 33 33 H 1.09002 * 109.47091 * 165.97532 * 16 6 5 34 34 H 1.09004 * 109.46562 * 72.15531 * 17 16 6 35 35 H 1.08996 * 109.47403 * 192.15564 * 17 16 6 36 36 H 1.08999 * 109.46633 * 312.16469 * 17 16 6 37 37 H 1.08991 * 109.47241 * 50.96235 * 18 16 6 38 38 H 1.09001 * 109.47074 * 170.96240 * 18 16 6 39 39 H 1.08998 * 109.46684 * 290.96228 * 18 16 6 40 40 H 0.96705 * 116.99434 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6185 0.6740 0.0006 5 6 4.8549 1.5355 0.0013 6 7 5.1420 1.9789 1.3721 7 6 5.9630 3.1971 1.3703 8 6 5.9206 3.8335 2.7356 9 1 5.4040 3.3401 3.5456 10 6 6.5413 5.0457 2.9507 11 7 7.1708 5.6464 1.9646 12 14 6.4894 5.8342 4.6434 13 1 7.1235 4.9259 5.6324 14 1 7.2264 7.1230 4.6120 15 1 5.0773 6.0803 5.0317 16 6 5.7870 0.9105 2.1467 17 6 4.7502 -0.1553 2.5074 18 6 6.9011 0.2763 1.3115 19 8 3.6012 -0.6650 -0.0049 20 6 2.3226 -1.0963 0.0006 21 6 1.8856 -2.4943 0.0000 22 8 0.6989 -2.7605 -0.0011 23 8 2.7995 -3.4866 0.0007 24 1 -0.3634 0.0002 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 2.0303 2.1590 -0.0004 28 1 5.6990 0.9600 -0.3786 29 1 4.6921 2.4053 -0.6353 30 1 6.9926 2.9410 1.1205 31 1 5.5732 3.8968 0.6310 32 1 7.6078 6.4990 2.1160 33 1 6.2108 1.3288 3.0597 34 1 4.4851 -0.7212 1.6143 35 1 5.1677 -0.8302 3.2546 36 1 3.8592 0.3264 2.9101 37 1 7.5520 1.0582 0.9204 38 1 7.4825 -0.4018 1.9362 39 1 6.4623 -0.2794 0.4827 40 1 2.4631 -4.3932 0.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042529515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:46 Heat of formation + Delta-G solvation = -68.680568 kcal Electronic energy + Delta-G solvation = -22717.013485 eV Core-core repulsion = 19305.960879 eV Total energy + Delta-G solvation = -3411.052606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.74044 -39.98685 -37.84832 -36.35527 -34.05984 -32.89131 -31.84199 -30.38987 -27.91955 -27.56466 -26.73985 -25.19643 -22.73781 -22.15197 -21.35106 -19.90077 -18.84443 -18.40131 -17.49124 -16.63486 -16.28577 -15.54990 -15.25194 -14.97644 -14.66524 -14.09701 -13.76905 -13.54437 -13.21425 -13.11025 -13.01699 -12.69455 -12.56118 -12.24661 -12.03490 -11.80024 -11.75989 -11.48670 -11.15620 -11.00029 -10.79464 -10.78646 -10.60121 -10.54256 -10.06908 -9.86520 -9.48846 -9.34621 -8.50114 -8.38789 -7.39919 -6.07641 -4.08771 0.85934 2.36779 2.48138 2.87233 3.25282 3.31447 3.35665 3.38948 4.38851 4.71073 4.78336 4.86929 5.12800 5.28760 5.43627 5.52122 5.53270 5.61013 5.66078 5.74306 5.81939 5.87704 5.92117 6.05679 6.08349 6.13453 6.25873 6.27336 6.36677 6.48061 6.52785 6.76958 6.81339 7.04811 7.18266 7.26419 7.72285 7.72921 7.98280 8.09698 8.42624 8.97826 9.55388 11.02904 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.004248 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.571342 B = 6589.586948 C = 6959.435428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.059 4.059 3 C -0.216 4.216 4 C 0.081 3.919 5 C 0.108 3.892 6 N -0.522 5.522 7 C 0.193 3.807 8 C -0.506 4.506 9 H 0.063 0.937 10 C 0.057 3.943 11 N -0.899 5.899 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.080 3.920 17 C -0.157 4.157 18 C -0.182 4.182 19 O -0.149 6.149 20 C -0.102 4.102 21 C 0.574 3.426 22 O -0.504 6.504 23 O -0.506 6.506 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.160 0.840 28 H 0.061 0.939 29 H 0.104 0.896 30 H -0.003 1.003 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 -13.647 -5.265 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.061 4.061 3 C -0.235 4.235 4 C 0.028 3.972 5 C -0.020 4.020 6 N -0.247 5.247 7 C 0.069 3.931 8 C -0.544 4.544 9 H 0.081 0.919 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.029 4.029 17 C -0.214 4.214 18 C -0.241 4.241 19 O -0.045 6.045 20 C -0.152 4.152 21 C 0.420 3.580 22 O -0.395 6.395 23 O -0.318 6.318 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.178 0.822 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -8.161 -13.226 -5.075 16.349 hybrid contribution 0.544 -0.148 0.557 0.793 sum -7.616 -13.374 -4.518 16.040 Atomic orbital electron populations 1.20475 0.88333 1.03752 1.02847 1.20630 0.97274 0.90871 0.97295 1.21464 0.91194 1.00109 1.10758 1.23167 0.98160 0.79537 0.96373 1.20883 0.90634 0.95944 0.94537 1.62320 1.48564 1.05642 1.08161 1.19821 0.90189 0.84634 0.98486 1.21070 1.33330 1.04517 0.95527 0.91894 1.24951 0.95378 0.96985 0.97099 1.69929 1.35428 1.17011 1.31468 0.86562 0.78222 0.78429 0.84215 1.20291 1.21369 1.20154 1.21649 0.92280 0.91049 0.97934 1.22190 0.99612 0.98197 1.01418 1.22444 0.99888 1.01060 1.00671 1.84142 1.27290 1.22606 1.70463 1.20152 0.82718 0.90999 1.21291 1.18891 0.83119 0.83618 0.72352 1.90940 1.17289 1.83342 1.47900 1.84704 1.41815 1.19508 1.85758 0.90656 0.89888 0.90860 0.82210 0.92093 0.87789 0.98550 0.94736 0.92811 0.88890 0.91853 0.93465 0.92411 0.92124 0.92807 0.92945 0.72738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.81 36.00 0.35 -0.78 16 2 C -0.06 -0.83 6.20 -104.42 -0.65 -1.48 16 3 C -0.22 -3.21 10.72 -39.89 -0.43 -3.64 16 4 C 0.08 1.28 5.23 -35.40 -0.18 1.10 16 5 C 0.11 1.81 5.25 -4.98 -0.03 1.78 16 6 N -0.52 -10.46 4.34 -229.52 -1.00 -11.45 16 7 C 0.19 4.65 4.64 -4.98 -0.02 4.63 16 8 C -0.51 -13.56 8.43 -34.44 -0.29 -13.85 16 9 H 0.06 1.69 7.50 -52.48 -0.39 1.30 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 12 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.08 1.48 2.76 -67.71 -0.19 1.30 16 17 C -0.16 -2.64 8.36 37.16 0.31 -2.33 16 18 C -0.18 -3.01 8.05 37.16 0.30 -2.71 16 19 O -0.15 -2.35 7.94 4.74 0.04 -2.31 16 20 C -0.10 -1.52 7.18 -36.84 -0.26 -1.78 16 21 C 0.57 7.64 8.30 34.05 0.28 7.93 16 22 O -0.50 -7.19 15.53 -19.36 -0.30 -7.49 16 23 O -0.51 -5.36 13.44 -42.47 -0.57 -5.93 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.01 6.45 -51.93 -0.33 0.68 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.06 0.97 5.29 -51.93 -0.27 0.70 16 29 H 0.10 1.66 7.60 -51.92 -0.39 1.26 16 30 H 0.00 -0.08 6.66 -51.93 -0.35 -0.43 16 31 H 0.03 0.88 7.67 -51.93 -0.40 0.48 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.09 1.94 6.94 -51.93 -0.36 1.58 16 34 H 0.06 1.05 4.15 -51.93 -0.22 0.84 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.08 6.73 -51.93 -0.35 0.73 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.81 6.42 -51.93 -0.33 0.48 16 40 H 0.41 2.08 9.11 45.56 0.42 2.50 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -30.46 327.37 -6.74 -37.20 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.66 Total: 2.26 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.90 Total: -8.37 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.26 Total: -36.42 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.83 Total: -15.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.46 -6.74 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042529515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.484 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds