Wall clock time and date at job start Tue Mar 31 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 C 1.53000 * 109.47034 * 120.00057 * 2 1 3 5 5 N 1.46913 * 109.46781 * 63.25777 * 4 2 1 6 6 C 1.46898 * 110.99540 * 200.31962 * 5 4 2 7 7 C 1.50700 * 109.47413 * 66.04420 * 6 5 4 8 8 H 1.07998 * 119.99973 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99705 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00103 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99525 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47113 * 60.00900 * 11 9 7 13 13 H 1.48508 * 109.46883 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47353 * 300.00202 * 11 9 7 15 15 C 1.46897 * 111.00029 * 76.36566 * 5 4 2 16 16 C 1.50697 * 109.47056 * 189.30310 * 15 5 4 17 17 C 1.40306 * 126.64921 * 260.28321 * 16 15 5 18 18 C 1.35165 * 107.12618 * 180.14365 * 17 16 15 19 19 O 1.33903 * 108.78515 * 359.61747 * 18 17 16 20 20 C 1.34940 * 109.38006 * 0.24647 * 19 18 17 21 21 C 1.46467 * 125.99837 * 179.97438 * 20 19 18 22 22 O 1.21620 * 120.00259 * 185.66333 * 21 20 19 23 23 O 1.34903 * 120.00052 * 5.65459 * 21 20 19 24 24 H 1.09004 * 109.46965 * 59.99300 * 1 2 3 25 25 H 1.08991 * 109.47150 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46965 * 299.99755 * 1 2 3 27 27 H 1.08999 * 109.46533 * 240.00463 * 2 1 3 28 28 H 1.09002 * 109.46596 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47240 * 299.99825 * 3 2 1 30 30 H 1.08999 * 109.47099 * 60.00810 * 3 2 1 31 31 H 1.08995 * 109.47227 * 303.25816 * 4 2 1 32 32 H 1.08999 * 109.47110 * 183.25424 * 4 2 1 33 33 H 1.09002 * 109.46885 * 186.04983 * 6 5 4 34 34 H 1.09003 * 109.47132 * 306.03983 * 6 5 4 35 35 H 0.97005 * 119.99547 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47494 * 69.29859 * 15 5 4 37 37 H 1.08999 * 109.46782 * 309.30169 * 15 5 4 38 38 H 1.07999 * 126.43708 * 359.97438 * 17 16 15 39 39 H 1.08007 * 125.60552 * 179.88084 * 18 17 16 40 40 H 0.96700 * 116.99920 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6156 -2.1272 1.2104 6 6 1.6486 -2.7242 2.5522 7 6 0.6127 -2.0608 3.4229 8 1 -0.0077 -1.2741 3.0198 9 6 0.4572 -2.4583 4.7339 10 7 1.2132 -3.4160 5.2248 11 14 -0.8263 -1.6355 5.8132 12 1 -2.1725 -1.8301 5.2174 13 1 -0.7930 -2.2391 7.1697 14 1 -0.5334 -0.1830 5.9110 15 6 2.4384 -2.8997 0.2701 16 6 1.8371 -4.2690 0.0842 17 6 2.2507 -5.4568 0.7060 18 6 1.4443 -6.4436 0.2554 19 8 0.5577 -5.9191 -0.6000 20 6 0.7801 -4.5934 -0.7186 21 6 0.0218 -3.6653 -1.5606 22 8 0.3800 -2.5077 -1.6651 23 8 -1.0739 -4.0944 -2.2203 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6298 -0.2423 2.1382 32 1 3.1285 -0.6710 1.2789 33 1 1.4344 -3.7905 2.4808 34 1 2.6367 -2.5807 2.9896 35 1 1.1039 -3.6953 6.1473 36 1 3.4489 -2.9974 0.6669 37 1 2.4733 -2.3848 -0.6899 38 1 3.0627 -5.5632 1.4101 39 1 1.5027 -7.4833 0.5418 40 1 -1.5412 -3.4454 -2.7639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043416883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:44 Heat of formation + Delta-G solvation = -78.128404 kcal Electronic energy + Delta-G solvation = -23271.131692 eV Core-core repulsion = 19859.669396 eV Total energy + Delta-G solvation = -3411.462295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43906 -39.56067 -37.50206 -35.84818 -34.34126 -32.99712 -31.94396 -30.05067 -27.51224 -26.50089 -26.25590 -24.05737 -23.39344 -21.37530 -20.95130 -19.70765 -18.93068 -18.01801 -17.15190 -16.39529 -16.16443 -15.73897 -14.93366 -14.76001 -14.54512 -14.08570 -13.90634 -13.35704 -13.17860 -13.10956 -12.67348 -12.42253 -12.19617 -11.72265 -11.66274 -11.58019 -11.31929 -11.07880 -10.99114 -10.78697 -10.68392 -10.39037 -10.23889 -10.11444 -9.83087 -9.78976 -9.28939 -9.12756 -8.40949 -8.37927 -7.13353 -5.99344 -3.98914 1.17775 2.59017 2.74850 3.21626 3.35061 3.38623 3.42389 3.58691 4.45940 4.92496 5.03997 5.15820 5.36616 5.48034 5.53114 5.61992 5.77336 5.81477 5.91540 6.00246 6.09868 6.19501 6.26346 6.32051 6.41433 6.44344 6.54845 6.62593 6.64736 6.69572 6.75663 7.09250 7.14928 7.22833 7.38622 7.40555 7.85999 8.11773 8.15624 8.29391 8.61372 9.08872 9.64424 11.11534 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.007476 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.894049 B = 3744.617444 C = 4927.357668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.069 3.931 5 N -0.520 5.520 6 C 0.190 3.810 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.109 3.891 16 C -0.041 4.041 17 C -0.211 4.211 18 C -0.002 4.002 19 O -0.159 6.159 20 C -0.065 4.065 21 C 0.569 3.431 22 O -0.470 6.470 23 O -0.515 6.515 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.035 0.965 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.210 0.790 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -1.734 -13.099 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.059 4.059 5 N -0.245 5.245 6 C 0.065 3.935 7 C -0.541 4.541 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.019 4.019 16 C -0.044 4.044 17 C -0.231 4.231 18 C -0.072 4.072 19 O -0.055 6.055 20 C -0.115 4.115 21 C 0.412 3.588 22 O -0.357 6.357 23 O -0.327 6.327 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.005 0.995 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.175 0.825 39 H 0.226 0.774 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.740 -1.947 -13.032 13.198 hybrid contribution -0.022 0.657 0.996 1.194 sum 0.719 -1.290 -12.036 12.126 Atomic orbital electron populations 1.21565 0.94906 1.02719 0.98816 1.21053 0.96835 0.94118 0.98577 1.21834 1.00158 0.97263 1.01051 1.22053 0.95968 0.89469 0.98402 1.62063 1.50854 1.00843 1.10726 1.19792 0.95538 0.95669 0.82488 1.21137 1.18516 1.19510 0.94922 0.91914 1.24952 0.96288 0.95313 0.97972 1.69945 1.39624 1.29151 1.15197 0.86625 0.82171 0.79595 0.79403 1.20255 1.21438 1.20317 1.20631 0.93646 0.88733 0.98858 1.20558 0.93693 0.96915 0.93237 1.21789 1.04758 0.91803 1.04714 1.24317 0.90162 0.99823 0.92850 1.84083 1.48232 1.20793 1.52380 1.20289 1.01919 0.81636 1.07670 1.18775 0.78189 0.84996 0.76819 1.91000 1.67698 1.16629 1.60394 1.84663 1.40383 1.47492 1.60129 0.95051 0.90906 0.94081 0.91543 0.93538 0.93409 0.92970 0.89649 0.96599 0.94734 0.99495 0.93043 0.94894 0.89530 0.82534 0.77375 0.72986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.63 37.16 0.32 -1.87 16 2 C -0.09 -1.49 2.97 -90.61 -0.27 -1.76 16 3 C -0.15 -2.11 9.19 37.16 0.34 -1.77 16 4 C 0.07 1.38 4.22 -3.82 -0.02 1.36 16 5 N -0.52 -11.25 3.80 -237.51 -0.90 -12.15 16 6 C 0.19 4.91 4.58 -4.98 -0.02 4.88 16 7 C -0.50 -14.09 8.23 -34.44 -0.28 -14.38 16 8 H 0.06 1.76 7.32 -52.49 -0.38 1.38 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.11 2.06 4.50 -4.98 -0.02 2.03 16 16 C -0.04 -0.75 4.76 -104.42 -0.50 -1.25 16 17 C -0.21 -3.41 9.90 -39.90 -0.40 -3.81 16 18 C 0.00 -0.02 12.08 29.64 0.36 0.33 16 19 O -0.16 -2.58 10.67 4.81 0.05 -2.53 16 20 C -0.06 -1.14 7.18 -36.85 -0.26 -1.40 16 21 C 0.57 9.26 8.30 34.04 0.28 9.54 16 22 O -0.47 -8.12 13.48 -19.36 -0.26 -8.38 16 23 O -0.51 -6.69 13.44 -42.43 -0.57 -7.26 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.47 6.28 -51.93 -0.33 1.14 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.16 6.32 -51.93 -0.33 0.83 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.90 6.58 -51.93 -0.34 1.55 16 32 H 0.02 0.31 7.99 -51.93 -0.41 -0.11 16 33 H 0.03 0.95 6.26 -51.93 -0.33 0.62 16 34 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.09 1.56 5.40 -51.93 -0.28 1.28 16 38 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.21 1.89 8.06 -52.48 -0.42 1.46 16 40 H 0.41 3.16 9.11 45.56 0.42 3.58 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -32.42 332.20 -6.45 -38.87 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.92 Total: 1.98 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.57 Total: -6.60 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.17 Total: -37.97 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.78 Total: -18.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.42 -6.45 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.257 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds