Wall clock time and date at job start Tue Mar 31 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 C 1.52999 * 109.46999 * 119.99234 * 2 1 3 5 5 N 1.46902 * 109.47367 * 177.00117 * 4 2 1 6 6 C 1.46898 * 111.00036 * 288.52578 * 5 4 2 7 7 C 1.50698 * 109.46877 * 160.44773 * 6 5 4 8 8 H 1.08000 * 120.00727 * 4.71000 * 7 6 5 9 9 C 1.37880 * 119.99804 * 184.71283 * 7 6 5 10 10 N 1.31515 * 119.99735 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00321 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46897 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47333 * 119.99538 * 11 9 7 14 14 H 1.48504 * 109.46863 * 239.99887 * 11 9 7 15 15 C 1.46898 * 111.00065 * 164.56363 * 5 4 2 16 16 C 1.50695 * 109.47490 * 293.95937 * 15 5 4 17 17 O 1.33627 * 125.80471 * 270.32457 * 16 15 5 18 18 C 1.34221 * 110.92176 * 180.13225 * 17 16 15 19 19 C 1.34150 * 109.14624 * 359.58546 * 18 17 16 20 20 C 1.36496 * 125.81285 * 90.00165 * 16 15 5 21 21 C 1.47228 * 127.19603 * 0.03368 * 20 16 15 22 22 O 1.21535 * 120.00335 * 359.97438 * 21 20 16 23 23 O 1.34773 * 119.99869 * 179.97438 * 21 20 16 24 24 H 1.08996 * 109.47788 * 300.00051 * 1 2 3 25 25 H 1.08994 * 109.46951 * 60.01357 * 1 2 3 26 26 H 1.09006 * 109.46354 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47406 * 239.99097 * 2 1 3 28 28 H 1.09001 * 109.47640 * 59.99201 * 3 2 1 29 29 H 1.09000 * 109.47238 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46847 * 299.99212 * 3 2 1 31 31 H 1.09007 * 109.47421 * 57.00137 * 4 2 1 32 32 H 1.09006 * 109.47203 * 297.00437 * 4 2 1 33 33 H 1.09002 * 109.46651 * 280.44575 * 6 5 4 34 34 H 1.08994 * 109.47201 * 40.44796 * 6 5 4 35 35 H 0.97008 * 119.99721 * 180.02562 * 10 9 7 36 36 H 1.09008 * 109.46969 * 173.95347 * 15 5 4 37 37 H 1.08995 * 109.46869 * 53.96291 * 15 5 4 38 38 H 1.08001 * 125.42705 * 179.85719 * 18 17 16 39 39 H 1.07996 * 127.02827 * 180.27981 * 19 18 17 40 40 H 0.96703 * 117.00377 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5072 -0.7842 1.2138 6 6 3.9687 -1.7316 0.1904 7 6 5.4047 -1.4352 -0.1574 8 1 5.9461 -0.6747 0.3857 9 6 6.0276 -2.1349 -1.1692 10 7 5.3685 -3.0613 -1.8303 11 14 7.8078 -1.7680 -1.6000 12 1 8.3195 -0.6912 -0.7146 13 1 8.6251 -2.9936 -1.4126 14 1 7.8938 -1.3272 -3.0155 15 6 4.0515 -1.1287 2.5340 16 6 3.7641 -0.0110 3.5031 17 8 4.5517 1.0428 3.7369 18 6 4.0077 1.8526 4.6588 19 6 2.8290 1.3450 5.0497 20 6 2.6522 0.1003 4.2869 21 6 1.5139 -0.8311 4.3543 22 8 1.5026 -1.8283 3.6597 23 8 0.4844 -0.5777 5.1864 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5136 -0.8901 26 1 -0.3632 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.6765 1.9565 0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6334 -1.7321 1.2768 32 1 1.7211 -0.1770 2.1385 33 1 3.8905 -2.7485 0.5751 34 1 3.3508 -1.6321 -0.7019 35 1 5.8068 -3.5538 -2.5419 36 1 5.1291 -1.2740 2.4561 37 1 3.5859 -2.0474 2.8904 38 1 4.4466 2.7692 5.0241 39 1 2.1488 1.7650 5.7758 40 1 -0.2404 -1.2179 5.1957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044420202.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:34 Heat of formation + Delta-G solvation = -79.225860 kcal Electronic energy + Delta-G solvation = -23198.281878 eV Core-core repulsion = 19786.771994 eV Total energy + Delta-G solvation = -3411.509884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50364 -39.78812 -37.52334 -35.90609 -34.14075 -32.91463 -32.44034 -30.31602 -27.20613 -26.65443 -26.49258 -24.29614 -23.40399 -21.59164 -21.15056 -19.58167 -19.03499 -18.07202 -17.20314 -16.60231 -16.13464 -15.62054 -15.19328 -14.75800 -14.71813 -14.36235 -14.07852 -13.55111 -13.40283 -12.86280 -12.73884 -12.69211 -12.31803 -12.03778 -11.81542 -11.54784 -11.34791 -11.20952 -11.07594 -10.75010 -10.61666 -10.44234 -10.34964 -10.17123 -10.08204 -9.79032 -9.57279 -9.20315 -8.56131 -8.39997 -7.26978 -6.00403 -4.01689 1.33193 2.06352 2.84192 3.18474 3.28716 3.32603 3.40251 3.45211 4.44409 4.60467 4.85097 5.01850 5.18118 5.35590 5.44307 5.47813 5.53581 5.74803 5.79284 5.93050 6.00607 6.03940 6.15428 6.24330 6.28290 6.30441 6.37104 6.38345 6.55038 6.58593 6.70479 6.93562 7.02331 7.13678 7.25863 7.36319 7.82984 8.02364 8.09048 8.16300 8.52688 9.05950 9.62375 11.10047 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.005952 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.159615 B = 4702.889518 C = 5376.051122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.131 4.131 4 C 0.063 3.937 5 N -0.524 5.524 6 C 0.193 3.807 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.117 3.883 16 C 0.138 3.862 17 O -0.158 6.158 18 C -0.048 4.048 19 C -0.174 4.174 20 C -0.253 4.253 21 C 0.554 3.446 22 O -0.506 6.506 23 O -0.515 6.515 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.055 0.945 33 H -0.007 1.007 34 H 0.042 0.958 35 H 0.260 0.740 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.206 0.794 39 H 0.157 0.843 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 8.206 12.758 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.189 4.189 4 C -0.065 4.065 5 N -0.249 5.249 6 C 0.069 3.931 7 C -0.544 4.544 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.010 4.010 16 C 0.083 3.917 17 O -0.053 6.053 18 C -0.114 4.114 19 C -0.193 4.193 20 C -0.257 4.257 21 C 0.400 3.600 22 O -0.395 6.395 23 O -0.327 6.327 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.011 0.989 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.175 0.825 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.292 8.613 12.148 16.581 hybrid contribution -0.089 -0.941 0.122 0.953 sum -7.381 7.672 12.270 16.245 Atomic orbital electron populations 1.21790 0.96325 1.01064 1.00769 1.21149 0.93861 0.97146 0.99304 1.21648 1.02938 0.94999 0.99276 1.22225 0.88988 0.98439 0.96884 1.62162 1.06821 1.53059 1.02847 1.19819 0.96298 0.88054 0.88942 1.21212 0.96183 1.19661 1.17353 0.91783 1.24975 0.98222 0.95179 0.96160 1.69971 1.36729 1.23903 1.23166 0.86476 0.84831 0.78070 0.78253 1.19644 1.21177 1.21084 1.20856 1.03387 0.89176 0.87605 1.23342 0.87206 0.87513 0.93623 1.83902 1.44660 1.28555 1.48135 1.23872 0.95615 0.97602 0.94275 1.22763 0.98266 0.95271 1.02957 1.20054 0.96942 1.00207 1.08452 1.19644 0.80996 0.83419 0.75989 1.90964 1.78894 1.28069 1.41598 1.84562 1.31589 1.55196 1.61347 0.93596 0.93035 0.93159 0.90416 0.94375 0.90827 0.94217 0.94781 0.92661 0.98937 0.93997 0.93004 0.87763 0.90420 0.77731 0.82517 0.73220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 37.16 0.34 -1.80 16 2 C -0.10 -1.75 2.92 -90.62 -0.26 -2.01 16 3 C -0.13 -2.27 9.06 37.16 0.34 -1.94 16 4 C 0.06 1.23 2.86 -3.82 -0.01 1.22 16 5 N -0.52 -11.36 3.74 -237.52 -0.89 -12.24 16 6 C 0.19 4.97 4.59 -4.98 -0.02 4.95 16 7 C -0.51 -13.96 8.61 -34.44 -0.30 -14.25 16 8 H 0.06 1.76 7.65 -52.49 -0.40 1.36 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 11 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.12 2.33 4.98 -4.98 -0.02 2.30 16 16 C 0.14 2.38 6.31 -34.94 -0.22 2.16 16 17 O -0.16 -2.53 10.52 7.70 0.08 -2.44 16 18 C -0.05 -0.57 12.03 29.29 0.35 -0.22 16 19 C -0.17 -2.16 11.05 -37.45 -0.41 -2.57 16 20 C -0.25 -3.94 5.39 -103.30 -0.56 -4.49 16 21 C 0.55 8.42 7.21 34.38 0.25 8.67 16 22 O -0.51 -8.97 13.05 -19.29 -0.25 -9.23 16 23 O -0.52 -5.87 13.34 -40.69 -0.54 -6.42 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.60 6.43 -51.93 -0.33 1.27 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.45 7.69 -51.93 -0.40 1.05 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.72 7.39 -51.92 -0.38 0.34 16 32 H 0.05 1.04 4.33 -51.93 -0.22 0.81 16 33 H -0.01 -0.20 8.00 -51.93 -0.42 -0.61 16 34 H 0.04 1.15 6.18 -51.93 -0.32 0.83 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.10 2.13 7.31 -51.92 -0.38 1.76 16 37 H 0.08 1.57 6.47 -51.93 -0.34 1.24 16 38 H 0.21 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.41 2.78 9.11 45.56 0.42 3.19 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -32.00 330.14 -6.41 -38.41 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.87 Total: 2.70 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.63 Total: -6.51 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.15 Total: -38.04 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.71 Total: -18.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.00 -6.41 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044420202.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.815 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds