Wall clock time and date at job start Tue Mar 31 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.53006 * 109.47255 * 119.99556 * 2 1 3 5 5 N 1.46898 * 109.46666 * 60.95709 * 4 2 1 6 6 C 1.46895 * 111.00254 * 73.48845 * 5 4 2 7 7 C 1.50697 * 109.47544 * 279.60759 * 6 5 4 8 8 H 1.08007 * 119.99668 * 2.96505 * 7 6 5 9 9 C 1.37877 * 120.00447 * 182.96568 * 7 6 5 10 10 N 1.31512 * 119.99918 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99888 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47129 * 60.00402 * 11 9 7 13 13 H 1.48501 * 109.47260 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47538 * 300.00104 * 11 9 7 15 15 C 1.46904 * 110.99656 * 197.44221 * 5 4 2 16 16 C 1.50697 * 109.47109 * 66.04877 * 15 5 4 17 17 C 1.34159 * 125.42859 * 90.00459 * 16 15 5 18 18 C 1.47063 * 105.94805 * 180.02562 * 17 16 15 19 19 C 1.47232 * 127.20017 * 179.97438 * 18 17 16 20 20 O 1.21542 * 120.00025 * 0.02562 * 19 18 17 21 21 O 1.34771 * 119.99765 * 180.02562 * 19 18 17 22 22 C 1.36499 * 105.59858 * 359.97438 * 18 17 16 23 23 O 1.33631 * 108.38095 * 359.97438 * 22 18 17 24 24 H 1.09001 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47188 * 299.99968 * 1 2 3 26 26 H 1.09003 * 109.46888 * 60.00437 * 1 2 3 27 27 H 1.08995 * 109.47715 * 239.99852 * 2 1 3 28 28 H 1.09005 * 109.47068 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46929 * 299.99538 * 3 2 1 30 30 H 1.09000 * 109.47682 * 59.99561 * 3 2 1 31 31 H 1.09002 * 109.46690 * 300.95857 * 4 2 1 32 32 H 1.08998 * 109.47283 * 180.95625 * 4 2 1 33 33 H 1.09005 * 109.47077 * 39.60777 * 6 5 4 34 34 H 1.08995 * 109.47480 * 159.60175 * 6 5 4 35 35 H 0.96998 * 119.99652 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.47057 * 306.04656 * 15 5 4 37 37 H 1.09003 * 109.46962 * 186.05078 * 15 5 4 38 38 H 1.07997 * 127.02873 * 359.74658 * 17 16 15 39 39 H 0.96698 * 116.99815 * 180.02562 * 21 19 18 40 40 H 1.07995 * 125.80791 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5693 -2.1126 1.2378 6 6 2.3024 -2.9082 0.2441 7 6 1.7248 -2.6579 -1.1251 8 1 0.9278 -1.9402 -1.2519 9 6 2.2137 -3.3452 -2.2158 10 7 3.1845 -4.2188 -2.0614 11 14 1.4972 -3.0353 -3.9128 12 1 1.6834 -1.6074 -4.2756 13 1 2.1902 -3.8935 -4.9070 14 1 0.0480 -3.3591 -3.9050 15 6 1.6726 -2.7143 2.5740 16 6 0.7187 -2.0209 3.5123 17 6 -0.5544 -2.3814 3.7335 18 6 -1.0819 -1.4209 4.7142 19 6 -2.4386 -1.3858 5.2850 20 8 -3.2607 -2.2157 4.9495 21 8 -2.7688 -0.4334 6.1796 22 6 -0.0505 -0.5686 4.9845 23 8 1.0078 -0.9448 4.2605 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6627 -0.2172 2.1392 32 1 3.1299 -0.7063 1.2580 33 1 3.3539 -2.6212 0.2529 34 1 2.2128 -3.9667 0.4883 35 1 3.5282 -4.7025 -2.8287 36 1 2.6917 -2.6035 2.9446 37 1 1.4201 -3.7731 2.5162 38 1 -1.0851 -3.2056 3.2802 39 1 -3.6711 -0.4512 6.5268 40 1 -0.0840 0.2674 5.6673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051330713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:38 Heat of formation + Delta-G solvation = -79.399012 kcal Electronic energy + Delta-G solvation = -22468.210513 eV Core-core repulsion = 19056.693120 eV Total energy + Delta-G solvation = -3411.517393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.56102 -39.90423 -37.58316 -36.13405 -33.99502 -32.91102 -32.64977 -30.50232 -27.34689 -26.46013 -26.08201 -24.72353 -23.69590 -21.21444 -20.98880 -20.23610 -19.06527 -17.81773 -17.51400 -16.41690 -16.32184 -15.85929 -15.48969 -15.00339 -14.67865 -14.30966 -13.91537 -13.82847 -13.20213 -12.93793 -12.71750 -12.58591 -12.26200 -11.98951 -11.75610 -11.72691 -11.58409 -11.30436 -11.06489 -10.78465 -10.75308 -10.55744 -10.22008 -10.14686 -9.99165 -9.82711 -9.48219 -9.11509 -8.57842 -8.39069 -7.37568 -6.03636 -4.02654 1.12891 2.09952 2.75128 3.01862 3.08546 3.33465 3.37939 3.41095 4.41277 4.60323 4.70245 4.91301 5.17281 5.31095 5.53256 5.62050 5.66073 5.70095 5.80320 5.88077 5.94661 6.02289 6.09665 6.25575 6.27380 6.32519 6.42542 6.43450 6.51752 6.66333 6.77856 7.06225 7.14338 7.19617 7.22923 7.38075 7.81265 7.81788 8.03782 8.12091 8.46885 9.03658 9.59709 11.06837 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004429 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.493642 B = 6320.854082 C = 6549.432231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.073 3.927 5 N -0.529 5.529 6 C 0.193 3.807 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.129 3.871 16 C 0.019 3.981 17 C -0.147 4.147 18 C -0.234 4.234 19 C 0.556 3.444 20 O -0.513 6.513 21 O -0.519 6.519 22 C 0.047 3.953 23 O -0.170 6.170 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.043 0.957 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.413 0.587 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 8.653 14.017 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.055 4.055 5 N -0.254 5.254 6 C 0.069 3.931 7 C -0.543 4.543 8 H 0.096 0.904 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.201 1.201 15 C 0.001 3.999 16 C -0.030 4.030 17 C -0.167 4.167 18 C -0.236 4.236 19 C 0.401 3.599 20 O -0.402 6.402 21 O -0.331 6.331 22 C -0.024 4.024 23 O -0.065 6.065 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.130 0.870 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.123 0.877 38 H 0.180 0.820 39 H 0.272 0.728 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.132 8.409 13.499 16.712 hybrid contribution -0.338 0.093 -0.394 0.527 sum -5.470 8.502 13.105 16.552 Atomic orbital electron populations 1.21646 0.95611 1.02639 0.98708 1.21432 0.96086 0.93990 1.00929 1.21832 1.00388 0.97427 1.00474 1.22034 0.96432 0.89475 0.97535 1.62209 1.58376 1.02268 1.02530 1.19829 0.91257 0.92476 0.89576 1.21342 1.19309 1.22857 0.90786 0.90403 1.24987 0.95207 0.95214 0.99192 1.69941 1.26950 1.26171 1.30848 0.86635 0.79347 0.78153 0.83780 1.20207 1.21478 1.20147 1.20676 0.94062 0.97368 0.87764 1.22562 0.96534 0.88054 0.95844 1.22373 0.93502 1.01682 0.99136 1.20435 0.92611 1.03336 1.07248 1.19788 0.87039 0.77546 0.75523 1.90910 1.51132 1.39017 1.59175 1.84549 1.38936 1.53022 1.56584 1.24550 0.84084 0.98649 0.95151 1.83810 1.37698 1.39789 1.45174 0.90666 0.94975 0.94579 0.86965 0.93409 0.93250 0.93994 0.92977 0.95745 0.98610 0.95178 0.92926 0.93884 0.87709 0.82049 0.72821 0.76839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.40 37.16 0.31 -2.01 16 2 C -0.11 -1.97 2.40 -90.62 -0.22 -2.18 16 3 C -0.14 -2.23 9.19 37.16 0.34 -1.89 16 4 C 0.07 1.36 4.27 -3.82 -0.02 1.35 16 5 N -0.53 -10.51 3.70 -237.52 -0.88 -11.39 16 6 C 0.19 4.64 4.79 -4.98 -0.02 4.61 16 7 C -0.50 -13.14 7.24 -34.44 -0.25 -13.39 16 8 H 0.08 1.98 4.58 -52.48 -0.24 1.74 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 11 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.13 2.16 5.45 -4.97 -0.03 2.13 16 16 C 0.02 0.29 5.89 -35.75 -0.21 0.08 16 17 C -0.15 -2.25 10.90 -37.44 -0.41 -2.65 16 18 C -0.23 -3.17 6.31 -103.29 -0.65 -3.82 16 19 C 0.56 7.26 8.33 34.38 0.29 7.55 16 20 O -0.51 -8.36 17.77 -19.30 -0.34 -8.70 16 21 O -0.52 -4.60 13.28 -40.68 -0.54 -5.14 16 22 C 0.05 0.53 11.94 30.10 0.36 0.89 16 23 O -0.17 -2.35 9.49 7.70 0.07 -2.28 16 24 H 0.07 1.52 6.74 -51.93 -0.35 1.17 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.11 2.46 5.14 -51.93 -0.27 2.19 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.90 6.09 -51.93 -0.32 0.58 16 32 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 33 H 0.00 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.03 0.77 7.65 -51.93 -0.40 0.37 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.10 1.68 7.80 -51.93 -0.41 1.28 16 38 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 39 H 0.41 1.79 9.11 45.56 0.42 2.20 16 40 H 0.22 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -31.03 334.72 -6.41 -37.43 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.88 Total: 1.89 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.60 Total: -7.94 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.14 Total: -36.37 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.81 Total: -16.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.03 -6.41 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051330713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.965 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds