Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33328 * 122.71311 * 2 1 4 4 S 1.76168 * 108.09937 * 179.78690 * 3 2 1 5 5 C 1.70967 * 90.35253 * 0.30669 * 4 3 2 6 6 N 1.38614 * 124.94268 * 179.97438 * 5 4 3 7 7 C 1.46948 * 111.00485 * 359.69427 * 6 5 4 8 8 C 1.53049 * 109.36764 * 183.19114 * 7 6 5 9 9 N 1.46961 * 109.36177 * 301.59566 * 8 7 6 10 10 C 1.46896 * 111.00124 * 183.18463 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00033 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.46956 * 110.87704 * 59.32220 * 9 8 7 21 21 C 1.46963 * 110.99834 * 123.49684 * 6 5 4 22 22 N 1.29679 * 110.10383 * 359.69061 * 5 4 3 23 23 H 1.09004 * 109.47434 * 269.97316 * 1 2 3 24 24 H 1.09000 * 109.47050 * 29.97304 * 1 2 3 25 25 H 1.08997 * 109.47241 * 149.97396 * 1 2 3 26 26 H 1.08004 * 125.94687 * 0.02588 * 3 2 1 27 27 H 1.08999 * 109.48998 * 63.22185 * 7 6 5 28 28 H 1.09000 * 109.50650 * 303.16522 * 7 6 5 29 29 H 1.09001 * 109.49268 * 181.63226 * 8 7 6 30 30 H 1.09000 * 109.49067 * 61.56179 * 8 7 6 31 31 H 1.09004 * 109.46774 * 50.00232 * 10 9 8 32 32 H 1.09000 * 109.47723 * 290.00621 * 10 9 8 33 33 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 34 34 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 35 35 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.49195 * 60.64478 * 20 9 8 37 37 H 1.09002 * 109.48564 * 180.71036 * 20 9 8 38 38 H 1.09000 * 109.48524 * 296.77403 * 21 6 5 39 39 H 1.09001 * 109.48887 * 56.81572 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9322 0.6773 0.0062 5 6 3.5110 -0.9796 -0.0009 6 7 4.4167 -2.0290 -0.0007 7 6 5.7994 -1.5314 -0.0008 8 6 6.7651 -2.7161 -0.0809 9 7 6.5314 -3.6132 1.0594 10 6 7.4911 -4.7253 1.0596 11 6 7.3836 -5.4914 2.3796 12 6 8.3686 -6.6320 2.3800 13 1 9.0076 -6.7941 1.5246 14 6 8.4583 -7.4650 3.4752 15 7 9.3217 -8.4571 3.4778 16 14 7.3534 -7.1844 4.9550 17 1 6.0941 -7.9528 4.7853 18 1 8.0491 -7.6398 6.1855 19 1 7.0389 -5.7378 5.0708 20 6 5.1487 -4.1108 1.0595 21 6 4.1829 -2.9262 1.1396 22 7 2.2210 -1.1117 -0.0005 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.8345 2.1278 0.0004 27 1 5.9848 -0.9725 0.9164 28 1 5.9515 -0.8795 -0.8610 29 1 7.7918 -2.3510 -0.0519 30 1 6.5980 -3.2592 -1.0111 31 1 8.5019 -4.3329 0.9485 32 1 7.2690 -5.3971 0.2305 33 1 6.3727 -5.8838 2.4907 34 1 7.6058 -4.8197 3.2087 35 1 9.3845 -9.0433 4.2480 36 1 4.9632 -4.6697 0.1423 37 1 4.9968 -4.7626 1.9199 38 1 4.3500 -2.3830 2.0698 39 1 3.1562 -3.2909 1.1108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051879871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = 58.905580 kcal Electronic energy + Delta-G solvation = -19600.298735 eV Core-core repulsion = 16669.824302 eV Total energy + Delta-G solvation = -2930.474433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40826 -39.02591 -35.99579 -33.06239 -31.70573 -31.08598 -30.20641 -27.79383 -26.99773 -24.07511 -23.96593 -22.78024 -20.48238 -19.81690 -19.54649 -18.32426 -16.97433 -16.52249 -15.61198 -15.12348 -14.97961 -14.66343 -14.58771 -14.22693 -14.02539 -13.77971 -13.30696 -12.96669 -12.78825 -12.69785 -12.51695 -12.19024 -11.58700 -11.49988 -11.39344 -11.20299 -11.09025 -10.85954 -10.29644 -9.95325 -9.92451 -9.77062 -9.64425 -9.29144 -9.22980 -8.54632 -8.22905 -7.99516 -6.06160 -4.04635 0.60540 1.07879 1.57506 2.60518 3.11863 3.30688 3.38533 3.43466 4.15766 4.35906 4.44543 4.70610 4.91794 4.96306 5.03483 5.09295 5.17127 5.28116 5.32744 5.34473 5.43060 5.48667 5.58468 5.66239 5.82925 5.89044 6.01731 6.03666 6.12267 6.26652 6.40515 6.58850 6.70017 7.06368 7.20304 7.47230 7.54473 7.68874 7.80645 8.50530 8.97795 9.56133 11.07178 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.003479 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.432692 B = 8046.330961 C = 8539.496667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.093 3.907 3 C -0.288 4.288 4 S 0.083 5.917 5 C 0.249 3.751 6 N -0.442 5.442 7 C 0.047 3.953 8 C 0.059 3.941 9 N -0.545 5.545 10 C 0.072 3.928 11 C -0.007 4.007 12 C -0.522 4.522 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.053 3.947 21 C 0.068 3.932 22 N -0.503 5.503 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.173 0.827 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.011 0.989 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 20.254 -7.401 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.039 4.039 3 C -0.428 4.428 4 S 0.334 5.666 5 C -0.121 4.121 6 N -0.163 5.163 7 C -0.080 4.080 8 C -0.070 4.070 9 N -0.270 5.270 10 C -0.055 4.055 11 C -0.045 4.045 12 C -0.561 4.561 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.076 4.076 21 C -0.059 4.059 22 N -0.224 5.224 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.190 0.810 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.338 20.059 -7.281 25.166 hybrid contribution -1.370 -0.041 0.557 1.480 sum -14.709 20.018 -6.724 25.735 Atomic orbital electron populations 1.20360 0.87175 1.03284 1.02945 1.20079 0.97921 0.86145 0.99753 1.26412 0.94446 1.03639 1.18347 1.84132 1.08298 1.03079 1.71074 1.25403 0.92571 0.93526 1.00607 1.58513 1.02699 1.12894 1.42150 1.22543 0.84799 0.98154 1.02538 1.22089 0.98387 0.93105 0.93394 1.62321 1.03477 1.20222 1.40954 1.22135 0.94013 0.89628 0.99688 1.19574 0.96783 0.95196 0.92926 1.21068 1.20365 1.11048 1.03591 0.91096 1.24998 0.95192 0.94775 0.98382 1.69911 1.35997 1.17508 1.30795 0.86777 0.80878 0.79250 0.82425 1.20320 1.21404 1.18767 1.22254 0.87698 0.95114 1.02501 1.22436 1.01103 0.93172 0.89173 1.66285 1.03000 1.31349 1.21746 0.90608 0.90755 0.90548 0.80956 0.91641 0.89398 0.89273 0.93769 0.91183 0.95190 0.97070 0.95697 0.92698 0.93710 0.88558 0.92504 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.31 36.00 0.37 -0.25 16 2 C 0.09 1.05 6.74 -84.18 -0.57 0.48 16 3 C -0.29 -2.84 11.10 29.02 0.32 -2.52 16 4 S 0.08 0.88 21.17 -107.50 -2.28 -1.40 16 5 C 0.25 3.28 6.81 -87.68 -0.60 2.69 16 6 N -0.44 -5.96 4.78 -175.23 -0.84 -6.79 16 7 C 0.05 0.56 4.64 -3.77 -0.02 0.54 16 8 C 0.06 0.78 5.61 -3.77 -0.02 0.76 16 9 N -0.54 -8.92 4.71 -234.47 -1.10 -10.02 16 10 C 0.07 1.39 4.90 -3.83 -0.02 1.37 16 11 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 12 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 13 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 16 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 20 C 0.05 0.82 5.41 -3.77 -0.02 0.80 16 21 C 0.07 0.95 5.51 -3.76 -0.02 0.93 16 22 N -0.50 -6.96 10.25 -11.36 -0.12 -7.08 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 27 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 28 H 0.09 0.89 7.61 -51.93 -0.40 0.49 16 29 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.01 0.26 5.93 -51.93 -0.31 -0.05 16 34 H 0.02 0.60 7.19 -51.93 -0.37 0.23 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.58 6.34 -51.93 -0.33 1.25 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.31 7.89 -51.93 -0.41 0.90 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -31.57 323.49 -10.49 -42.06 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.03 Total: -2.99 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.11 Total: -8.64 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -1.28 Total: -50.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.28 Total: -1.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.57 -10.49 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051879871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.970 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds