Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 H 1.08996 * 109.47483 * 54.47047 * 3 2 1 5 5 C 1.50702 * 109.46922 * 174.47057 * 3 2 1 6 6 H 1.08001 * 119.99848 * 119.99817 * 5 3 2 7 7 C 1.37872 * 120.00262 * 299.99690 * 5 3 2 8 8 N 1.31514 * 120.00279 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99892 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47111 * 89.99875 * 9 7 5 11 11 H 1.48500 * 109.47393 * 210.00022 * 9 7 5 12 12 H 1.48507 * 109.46977 * 329.99956 * 9 7 5 13 13 N 1.46897 * 109.46893 * 294.46835 * 3 2 1 14 14 C 1.46898 * 111.00058 * 154.44659 * 13 3 2 15 15 C 1.50700 * 109.47369 * 174.76902 * 14 13 3 16 16 C 1.34162 * 125.42757 * 89.99617 * 15 14 13 17 17 C 1.47059 * 105.95147 * 179.97438 * 16 15 14 18 18 C 1.47231 * 127.20372 * 180.02562 * 17 16 15 19 19 O 1.21533 * 120.00338 * 179.97438 * 18 17 16 20 20 O 1.34771 * 119.99590 * 359.97438 * 18 17 16 21 21 C 1.45207 * 116.99799 * 180.02562 * 20 18 17 22 22 C 1.36498 * 105.59475 * 359.97438 * 17 16 15 23 23 C 1.50698 * 125.80447 * 179.97438 * 22 17 16 24 24 O 1.33624 * 108.38706 * 359.76096 * 22 17 16 25 25 H 1.09002 * 109.46890 * 306.05205 * 1 2 3 26 26 H 1.08997 * 109.47133 * 66.05032 * 1 2 3 27 27 H 1.09004 * 109.47037 * 186.05164 * 1 2 3 28 28 H 1.09003 * 109.47204 * 239.99627 * 2 1 3 29 29 H 1.09000 * 109.46670 * 119.99850 * 2 1 3 30 30 H 0.97006 * 120.00006 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00300 * 30.48696 * 13 3 2 32 32 H 1.09004 * 109.46775 * 294.76881 * 14 13 3 33 33 H 1.09004 * 109.47270 * 54.76739 * 14 13 3 34 34 H 1.08002 * 127.02548 * 359.94995 * 16 15 14 35 35 H 1.08996 * 109.46971 * 59.99737 * 21 20 18 36 36 H 1.08997 * 109.47006 * 179.97438 * 21 20 18 37 37 H 1.09006 * 109.46614 * 299.99860 * 21 20 18 38 38 H 1.09003 * 109.47247 * 90.00885 * 23 22 17 39 39 H 1.09005 * 109.46981 * 210.00147 * 23 22 17 40 40 H 1.08996 * 109.47515 * 330.00176 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 0.8363 5 6 3.5408 1.4446 0.1369 6 1 4.1528 1.8868 -0.6353 7 6 4.1325 0.8822 1.2479 8 7 5.4422 0.8845 1.3677 9 14 3.0739 0.1168 2.5833 10 1 2.8558 -1.3202 2.2792 11 1 3.7598 0.2468 3.8940 12 1 1.7647 0.8155 2.6383 13 7 1.6624 2.0953 -1.2606 14 6 1.5693 3.5516 -1.0920 15 6 1.3074 4.1964 -2.4287 16 6 0.0956 4.4407 -2.9502 17 6 0.3375 5.0741 -4.2552 18 6 -0.6727 5.5358 -5.2215 19 8 -0.3242 6.0453 -6.2684 20 8 -1.9841 5.3932 -4.9452 21 6 -2.9239 5.8704 -5.9441 22 6 1.6947 5.1455 -4.3825 23 6 2.4408 5.7198 -5.5591 24 8 2.2491 4.6238 -3.2843 25 1 -0.3633 0.6048 0.8309 26 1 -0.3633 0.4172 -0.9392 27 1 -0.3633 -1.0220 0.1083 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8585 0.4891 2.1496 31 1 0.7986 1.7168 -1.6192 32 1 0.7530 3.7868 -0.4090 33 1 2.5059 3.9307 -0.6830 34 1 -0.8618 4.2175 -2.5032 35 1 -2.7619 5.3359 -6.8800 36 1 -3.9424 5.6954 -5.5976 37 1 -2.7726 6.9380 -6.1044 38 1 2.6141 6.7834 -5.3954 39 1 3.3973 5.2083 -5.6676 40 1 1.8509 5.5830 -6.4654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -69.621896 kcal Electronic energy + Delta-G solvation = -21855.646398 eV Core-core repulsion = 18444.552973 eV Total energy + Delta-G solvation = -3411.093425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.54374 -40.18743 -36.88048 -36.53485 -33.36922 -33.06120 -32.02235 -31.07374 -28.54687 -27.76066 -26.58057 -24.33880 -23.15468 -22.35963 -21.33435 -19.97595 -19.49891 -17.69640 -16.81157 -16.67126 -16.65242 -16.04389 -15.70980 -15.17415 -14.72945 -14.10211 -13.82730 -13.68762 -13.41577 -13.17036 -13.01823 -13.00997 -12.87626 -12.50993 -12.31949 -12.26617 -11.93761 -11.84124 -11.35290 -10.97182 -10.95312 -10.66213 -10.52262 -10.34394 -10.08666 -9.78554 -9.49095 -9.27887 -8.57516 -8.39733 -7.53961 -6.07112 -4.05156 1.14648 2.06213 2.51931 2.91481 3.03135 3.23172 3.32611 3.35816 4.37099 4.45559 4.69205 4.86359 4.90060 4.97422 5.08669 5.21262 5.24499 5.28622 5.40451 5.54611 5.59074 5.64947 5.70057 5.77906 5.85495 5.91105 6.02546 6.14438 6.25800 6.41212 6.45633 6.53376 6.63018 6.72496 7.06912 7.20786 7.64608 7.67754 7.80004 8.12502 8.68346 9.05506 9.54871 11.06129 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.003773 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.420855 B = 7418.921591 C = 8232.895579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C 0.191 3.809 4 H 0.005 0.995 5 C -0.500 4.500 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.267 1.267 13 N -0.671 5.671 14 C 0.136 3.864 15 C 0.024 3.976 16 C -0.179 4.179 17 C -0.243 4.243 18 C 0.545 3.455 19 O -0.517 6.517 20 O -0.352 6.352 21 C 0.038 3.962 22 C 0.092 3.908 23 C -0.086 4.086 24 O -0.153 6.153 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.263 0.737 31 H 0.324 0.676 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.158 0.842 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 8.537 -10.714 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.173 4.173 3 C 0.083 3.917 4 H 0.022 0.978 5 C -0.539 4.539 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.537 5.537 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.193 1.193 13 N -0.303 5.303 14 C 0.007 3.993 15 C -0.025 4.025 16 C -0.199 4.199 17 C -0.245 4.245 18 C 0.392 3.608 19 O -0.408 6.408 20 O -0.268 6.268 21 C -0.056 4.056 22 C 0.038 3.962 23 C -0.142 4.142 24 O -0.048 6.048 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.207 8.623 -11.065 19.267 hybrid contribution -1.634 -0.445 1.156 2.051 sum -14.841 8.179 -9.909 19.630 Atomic orbital electron populations 1.21928 0.98090 1.00751 1.00786 1.22120 0.93025 1.00168 1.02030 1.19648 0.97127 0.89412 0.85496 0.97799 1.21032 0.88969 1.37846 1.06041 0.89982 1.24962 0.94775 0.95899 0.97750 1.69886 1.08880 1.45604 1.29352 0.86950 0.80696 0.79845 0.81270 1.20539 1.22442 1.19257 1.60447 1.36919 1.00773 1.32172 1.20401 1.03064 0.89612 0.86192 1.22593 0.85583 1.00437 0.93895 1.22533 0.98542 1.04644 0.94145 1.20021 0.91387 1.15031 0.98071 1.19993 0.81569 0.74880 0.84311 1.90798 1.81683 1.42320 1.26020 1.86589 1.16650 1.75896 1.47696 1.23256 0.91173 0.99915 0.91292 1.22786 0.90794 0.94481 0.88155 1.20643 1.00596 1.00960 0.91960 1.83847 1.37526 1.59222 1.24216 0.93485 0.93082 0.93494 0.91185 0.92610 0.92652 0.85813 0.92596 0.88092 0.82407 0.91891 0.88108 0.91927 0.89200 0.89713 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.64 37.16 0.36 -2.21 16 2 C -0.14 -2.79 5.01 -26.73 -0.13 -2.92 16 3 C 0.19 4.28 1.61 -68.87 -0.11 4.16 16 4 H 0.00 0.10 6.91 -51.93 -0.36 -0.26 16 5 C -0.50 -13.74 9.15 -34.44 -0.32 -14.06 16 6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 9 Si 0.88 21.30 24.41 -169.99 -4.15 17.15 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.18 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 13 N -0.67 -13.10 6.26 -109.22 -0.68 -13.78 16 14 C 0.14 2.36 5.97 -4.98 -0.03 2.33 16 15 C 0.02 0.39 6.84 -35.74 -0.24 0.14 16 16 C -0.18 -2.58 10.93 -37.44 -0.41 -2.99 16 17 C -0.24 -3.55 6.32 -103.30 -0.65 -4.20 16 18 C 0.55 7.63 7.95 34.38 0.27 7.90 16 19 O -0.52 -7.65 14.64 -19.29 -0.28 -7.93 16 20 O -0.35 -4.31 10.48 -40.68 -0.43 -4.74 16 21 C 0.04 0.31 10.57 101.05 1.07 1.38 16 22 C 0.09 1.33 7.38 -34.94 -0.26 1.07 16 23 C -0.09 -0.94 9.89 36.00 0.36 -0.58 16 24 O -0.15 -2.56 10.52 7.71 0.08 -2.48 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.73 6.66 -51.93 -0.35 0.39 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.06 1.24 3.21 -51.93 -0.17 1.07 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.32 5.57 6.64 -39.29 -0.26 5.31 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.94 7.94 -51.93 -0.41 1.53 16 34 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.16 6.49 -51.93 -0.34 0.83 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -31.73 332.96 -5.58 -37.31 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.71 Total: 4.02 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.20 Total: -8.16 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.09 Total: -40.19 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.63 Total: -15.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.15 Total: 17.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.73 -5.58 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.308 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds