Wall clock time and date at job start Tue Mar 31 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47105 * 174.08800 * 3 2 1 5 5 C 1.50699 * 109.46844 * 54.08983 * 3 2 1 6 6 H 1.07998 * 120.00061 * 240.00283 * 5 3 2 7 7 C 1.37876 * 120.00144 * 60.00451 * 5 3 2 8 8 N 1.31517 * 119.99700 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46854 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47330 * 119.99375 * 9 7 5 12 12 H 1.48499 * 109.46930 * 239.99713 * 9 7 5 13 13 N 1.46900 * 109.47202 * 294.09239 * 3 2 1 14 14 C 1.46895 * 110.99796 * 275.78438 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.20566 * 14 13 3 16 16 C 1.34157 * 125.42765 * 89.99647 * 15 14 13 17 17 C 1.47058 * 105.94873 * 179.97438 * 16 15 14 18 18 C 1.47229 * 127.20103 * 180.02562 * 17 16 15 19 19 O 1.21538 * 120.00205 * 179.97438 * 18 17 16 20 20 O 1.34774 * 120.00047 * 359.97258 * 18 17 16 21 21 C 1.45199 * 116.99907 * 180.02562 * 20 18 17 22 22 C 1.36500 * 105.60005 * 0.02562 * 17 16 15 23 23 C 1.50693 * 125.80957 * 179.97438 * 22 17 16 24 24 O 1.33624 * 108.37918 * 359.75489 * 22 17 16 25 25 H 1.08999 * 109.47598 * 58.55558 * 1 2 3 26 26 H 1.09001 * 109.47002 * 298.55371 * 1 2 3 27 27 H 1.08998 * 109.46842 * 178.55668 * 1 2 3 28 28 H 1.08996 * 109.47248 * 119.99997 * 2 1 3 29 29 H 1.08999 * 109.46926 * 240.00634 * 2 1 3 30 30 H 0.97004 * 119.99628 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99884 * 39.73256 * 13 3 2 32 32 H 1.09002 * 109.47243 * 296.20338 * 14 13 3 33 33 H 1.09001 * 109.47481 * 56.20307 * 14 13 3 34 34 H 1.07994 * 127.02798 * 359.94614 * 16 15 14 35 35 H 1.09001 * 109.47159 * 180.02562 * 21 20 18 36 36 H 1.09005 * 109.47308 * 300.00200 * 21 20 18 37 37 H 1.09000 * 109.47380 * 60.00009 * 21 20 18 38 38 H 1.09001 * 109.47011 * 89.99834 * 23 22 17 39 39 H 1.09001 * 109.46863 * 209.99715 * 23 22 17 40 40 H 1.09000 * 109.47445 * 329.99851 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3697 0.7032 2.6749 9 14 0.8640 2.6975 3.8714 10 1 0.0841 3.8483 3.3492 11 1 -0.0368 1.7907 4.6271 12 1 1.9355 3.1940 4.7717 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1911 2.3984 -3.6180 16 6 2.4907 3.6323 -4.0511 17 6 1.8274 3.7747 -5.3559 18 6 1.8499 4.9500 -6.2424 19 8 1.2514 4.9251 -7.2999 20 8 2.5340 6.0536 -5.8811 21 6 2.5118 7.1745 -6.8038 22 6 1.1866 2.5892 -5.5733 23 6 0.3602 2.2429 -6.7849 24 8 1.4208 1.7864 -4.5311 25 1 -0.3634 0.5361 -0.8767 26 1 -0.3633 0.4912 0.9027 27 1 -0.3633 -1.0273 -0.0259 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.5172 0.4029 3.5854 31 1 0.7403 1.8249 -1.5502 32 1 3.6180 2.2150 -2.0418 33 1 2.7440 0.7138 -2.4302 34 1 3.0949 4.3704 -3.5449 35 1 3.1001 7.9950 -6.3931 36 1 2.9358 6.8667 -7.7597 37 1 1.4830 7.5030 -6.9517 38 1 0.9995 1.7917 -7.5438 39 1 -0.4213 1.5376 -6.5020 40 1 -0.0953 3.1486 -7.1851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:43 Heat of formation + Delta-G solvation = -77.582941 kcal Electronic energy + Delta-G solvation = -21833.496056 eV Core-core repulsion = 18422.057414 eV Total energy + Delta-G solvation = -3411.438642 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.58168 -40.16894 -36.73300 -36.49891 -33.33711 -33.11017 -31.74368 -30.47565 -28.42402 -27.52854 -26.01419 -24.12976 -23.32645 -22.98850 -21.37907 -19.53007 -19.36152 -17.67726 -16.82655 -16.64570 -16.03867 -16.00880 -15.68353 -14.82617 -14.77587 -14.12092 -13.65177 -13.42661 -13.34097 -13.16640 -13.06683 -12.84030 -12.61234 -12.37824 -12.24207 -12.06303 -11.73911 -11.58537 -10.94512 -10.91842 -10.74563 -10.60875 -10.54720 -10.02830 -9.94815 -9.75544 -9.60371 -9.03743 -8.40773 -8.38139 -7.35178 -6.00987 -4.02505 1.11949 2.08794 2.52302 2.87554 3.04938 3.30462 3.38956 3.44225 4.41252 4.47358 4.69127 4.88467 4.94417 5.01567 5.17564 5.31230 5.31692 5.33767 5.38681 5.51220 5.59722 5.70512 5.93504 5.97993 6.09644 6.28586 6.31562 6.33891 6.46039 6.52477 6.86074 7.11890 7.20060 7.21571 7.46142 7.63896 7.69341 7.84261 8.19886 8.40868 8.52770 9.03182 9.61315 11.06216 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.003644 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.652436 B = 7681.261813 C = 8431.339747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.136 3.864 15 C 0.005 3.995 16 C -0.153 4.153 17 C -0.240 4.240 18 C 0.546 3.454 19 O -0.518 6.518 20 O -0.349 6.349 21 C 0.038 3.962 22 C 0.087 3.913 23 C -0.084 4.084 24 O -0.168 6.168 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.094 0.906 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.331 0.669 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.163 0.837 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 4.946 -17.141 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.310 5.310 14 C 0.006 3.994 15 C -0.043 4.043 16 C -0.173 4.173 17 C -0.243 4.243 18 C 0.393 3.607 19 O -0.410 6.410 20 O -0.266 6.266 21 C -0.056 4.056 22 C 0.033 3.967 23 C -0.140 4.140 24 O -0.064 6.064 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.113 0.887 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.181 0.819 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.080 5.185 -17.076 17.846 hybrid contribution -0.503 -0.194 0.542 0.764 sum -0.583 4.992 -16.534 17.281 Atomic orbital electron populations 1.21566 0.97590 0.98100 1.01286 1.22123 0.95172 1.00967 1.00364 1.19268 0.96374 0.88769 0.84843 0.94544 1.21063 1.30548 1.11583 0.89570 0.91859 1.24904 0.95530 0.95163 0.98718 1.69891 1.39236 1.24097 1.20310 0.86500 0.79031 0.79906 0.82360 1.19722 1.21230 1.21156 1.61044 1.03896 1.63231 1.02863 1.20525 0.97581 0.97627 0.83637 1.22651 0.96290 0.93172 0.92168 1.22566 1.03851 0.97049 0.93852 1.20104 1.11118 0.94158 0.98881 1.19984 0.75122 0.81947 0.83664 1.90793 1.43008 1.82984 1.24188 1.86606 1.67158 1.23687 1.49109 1.23263 1.02935 0.86386 0.93040 1.22706 0.96612 0.87986 0.89398 1.20624 0.98247 1.04669 0.90447 1.83760 1.55547 1.41700 1.25405 0.95208 0.91464 0.95806 0.88748 0.96972 0.93120 0.85046 0.88233 0.94136 0.81932 0.88016 0.91966 0.91885 0.89277 0.89975 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.16 0.35 -2.33 16 2 C -0.15 -3.32 5.50 -26.73 -0.15 -3.47 16 3 C 0.21 5.09 2.33 -68.86 -0.16 4.93 16 4 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 5 C -0.49 -12.87 7.35 -34.44 -0.25 -13.12 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -24.64 11.39 55.43 0.63 -24.01 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -13.87 6.24 -109.22 -0.68 -14.55 16 14 C 0.14 2.33 6.00 -4.98 -0.03 2.30 16 15 C 0.01 0.09 6.75 -35.74 -0.24 -0.15 16 16 C -0.15 -2.34 10.93 -37.44 -0.41 -2.75 16 17 C -0.24 -3.55 6.32 -103.30 -0.65 -4.20 16 18 C 0.55 7.80 7.95 34.38 0.27 8.08 16 19 O -0.52 -7.72 14.64 -19.30 -0.28 -8.00 16 20 O -0.35 -4.51 10.48 -40.69 -0.43 -4.93 16 21 C 0.04 0.33 10.57 101.05 1.07 1.40 16 22 C 0.09 1.20 7.38 -34.94 -0.26 0.94 16 23 C -0.08 -0.86 9.89 36.00 0.36 -0.50 16 24 O -0.17 -2.59 10.52 7.71 0.08 -2.51 16 25 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 26 H 0.07 1.55 7.05 -51.93 -0.37 1.18 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.40 6.25 -51.93 -0.32 2.08 16 29 H 0.01 0.24 7.24 -51.93 -0.38 -0.13 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.33 6.68 6.55 -39.29 -0.26 6.43 16 32 H 0.10 1.63 8.13 -51.93 -0.42 1.21 16 33 H 0.04 0.69 7.23 -51.93 -0.38 0.31 16 34 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.11 1.12 6.49 -51.93 -0.34 0.79 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -29.09 335.94 -6.54 -35.63 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.70 Total: 4.81 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.20 Total: -7.45 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.05 Total: -38.56 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.63 Total: -15.45 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.09 -6.54 -35.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.957 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds