Wall clock time and date at job start Tue Mar 31 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47604 * 2 1 4 4 N 1.46497 * 109.47586 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99914 * 264.51246 * 4 3 2 6 6 H 1.08005 * 119.99958 * 191.13186 * 5 4 3 7 7 C 1.38812 * 120.00265 * 11.13416 * 5 4 3 8 8 N 1.31614 * 120.00051 * 18.92594 * 7 5 4 9 9 Si 1.86796 * 120.00239 * 198.93296 * 7 5 4 10 10 H 1.48501 * 109.47161 * 84.97009 * 9 7 5 11 11 H 1.48497 * 109.47359 * 204.97207 * 9 7 5 12 12 H 1.48500 * 109.47088 * 324.97541 * 9 7 5 13 13 C 1.46500 * 120.00069 * 84.51070 * 4 3 2 14 14 C 1.50705 * 109.47054 * 270.00487 * 13 4 3 15 15 C 1.35155 * 125.61135 * 89.99870 * 14 13 4 16 16 C 1.40313 * 107.12686 * 179.97438 * 15 14 13 17 17 C 1.50705 * 126.64973 * 179.97438 * 16 15 14 18 18 C 1.36634 * 106.70175 * 0.02562 * 16 15 14 19 19 C 1.46473 * 125.99667 * 180.02562 * 18 16 15 20 20 O 1.21622 * 119.99771 * 359.97438 * 19 18 16 21 21 O 1.34897 * 120.00045 * 179.97438 * 19 18 16 22 22 C 1.45201 * 116.99851 * 179.97438 * 21 19 18 23 23 O 1.33908 * 125.60262 * 269.69350 * 14 13 4 24 24 H 1.09000 * 109.46922 * 299.99894 * 1 2 3 25 25 H 1.09000 * 109.46941 * 60.00314 * 1 2 3 26 26 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47371 * 239.99833 * 2 1 3 28 28 H 1.09000 * 109.47104 * 120.00215 * 2 1 3 29 29 H 1.08998 * 109.46893 * 59.99540 * 3 2 1 30 30 H 1.09000 * 109.47066 * 300.00238 * 3 2 1 31 31 H 0.97002 * 120.00707 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47207 * 150.00322 * 13 4 3 33 33 H 1.09004 * 109.46986 * 29.99804 * 13 4 3 34 34 H 1.08002 * 126.44035 * 359.97438 * 15 14 13 35 35 H 1.08997 * 109.46757 * 90.02345 * 17 16 15 36 36 H 1.08996 * 109.47309 * 210.02696 * 17 16 15 37 37 H 1.09005 * 109.47285 * 330.03092 * 17 16 15 38 38 H 1.08997 * 109.47573 * 300.00125 * 22 21 19 39 39 H 1.09004 * 109.46906 * 60.00070 * 22 21 19 40 40 H 1.09003 * 109.47060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5560 1.1814 6 1 5.2541 1.7366 1.1733 7 6 3.5143 1.4390 2.3887 8 7 2.3314 0.8633 2.4282 9 14 4.2847 2.0988 3.9573 10 1 3.9783 3.5459 4.0886 11 1 3.7321 1.3678 5.1257 12 1 5.7564 1.9073 3.9044 13 6 4.2381 1.3209 -1.2620 14 6 4.4893 -0.1352 -1.5588 15 6 3.6691 -0.9480 -2.2611 16 6 4.2764 -2.2123 -2.3022 17 6 3.7364 -3.4482 -2.9745 18 6 5.4516 -2.1060 -1.6134 19 6 6.4219 -3.1813 -1.3953 20 8 6.2116 -4.2909 -1.8467 21 8 7.5488 -2.9409 -0.6938 22 6 8.4649 -4.0535 -0.5165 23 8 5.5646 -0.8348 -1.1750 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.8595 0.7818 3.2718 32 1 5.1905 1.8448 -1.1810 33 1 3.6493 1.7595 -2.0676 34 1 2.7239 -0.6757 -2.7069 35 1 4.0908 -3.4856 -4.0046 36 1 4.0810 -4.3330 -2.4394 37 1 2.6468 -3.4199 -2.9661 38 1 7.9579 -4.8611 0.0114 39 1 8.7972 -4.4093 -1.4918 40 1 9.3274 -3.7250 0.0633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060565502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:20 Heat of formation + Delta-G solvation = -47.884292 kcal Electronic energy + Delta-G solvation = -22891.448582 eV Core-core repulsion = 19481.297770 eV Total energy + Delta-G solvation = -3410.150812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -42.13875 -39.90528 -36.45915 -36.35229 -33.62805 -32.20619 -31.90067 -29.96915 -28.27793 -27.07964 -25.93343 -25.58242 -22.62728 -21.37755 -20.88744 -20.01235 -19.20793 -17.84669 -16.95062 -16.70147 -16.42592 -15.48718 -15.18284 -14.65012 -13.87991 -13.78223 -13.69108 -13.23022 -13.07624 -13.03325 -12.81644 -12.53174 -12.27728 -12.13637 -12.05886 -11.84028 -11.53253 -11.13241 -10.98371 -10.74253 -10.72582 -10.49561 -10.37083 -10.14488 -10.01084 -9.91689 -9.40821 -9.03767 -8.48885 -7.93557 -7.05713 -5.85755 -3.25199 1.27650 2.67292 2.81192 3.24383 3.33795 3.41184 3.42171 3.53108 4.40796 5.03988 5.12073 5.16066 5.19521 5.20997 5.32125 5.40808 5.51858 5.82652 5.86722 5.89993 6.02628 6.13643 6.19477 6.20835 6.25431 6.33083 6.50689 6.53254 6.56910 6.63606 6.91140 6.91645 7.16536 7.24376 7.49917 7.59241 7.73516 7.95683 8.09768 8.23515 9.10298 9.66606 10.09632 11.13449 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.006180 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.877926 B = 4529.646260 C = 5630.728468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.169 3.831 4 N -0.573 5.573 5 C -0.256 4.256 6 H 0.079 0.921 7 C 0.002 3.998 8 N -0.890 5.890 9 Si 0.909 3.091 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.204 3.796 14 C 0.064 3.936 15 C -0.246 4.246 16 C -0.062 4.062 17 C -0.093 4.093 18 C -0.112 4.112 19 C 0.557 3.443 20 O -0.505 6.505 21 O -0.349 6.349 22 C 0.038 3.962 23 O -0.145 6.145 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.031 0.969 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.006 0.994 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.150 0.850 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 -4.525 -8.357 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 C 0.044 3.956 4 N -0.291 5.291 5 C -0.385 4.385 6 H 0.097 0.903 7 C -0.196 4.196 8 N -0.535 5.535 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.205 1.205 13 C 0.074 3.926 14 C 0.005 3.995 15 C -0.266 4.266 16 C -0.065 4.065 17 C -0.150 4.150 18 C -0.162 4.162 19 C 0.405 3.595 20 O -0.396 6.396 21 O -0.265 6.265 22 C -0.056 4.056 23 O -0.039 6.039 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.971 -4.751 -8.096 10.192 hybrid contribution 0.203 -0.290 0.918 0.984 sum 4.174 -5.041 -7.177 9.713 Atomic orbital electron populations 1.21613 0.98618 0.99221 0.99942 1.22273 0.92890 1.00323 1.02123 1.21075 0.80787 0.94969 0.98739 1.44697 1.02367 1.80743 1.01334 1.19424 0.93537 1.42411 0.83141 0.90338 1.24890 0.97370 0.99507 0.97867 1.70137 1.14803 1.43417 1.25113 0.86184 0.78685 0.78694 0.82516 1.21274 1.21759 1.20499 1.19993 0.97816 0.84190 0.90561 1.25636 0.84037 0.98641 0.91189 1.21292 1.03299 0.92535 1.09471 1.20499 0.92418 0.96694 0.96859 1.20408 1.00522 0.94200 0.99836 1.20177 0.99119 0.84942 1.11975 1.19277 0.79594 0.85613 0.75041 1.90845 1.76347 1.22774 1.49630 1.86714 1.30798 1.41280 1.67720 1.23262 0.91782 0.88425 1.02152 1.84192 1.40128 1.18669 1.60886 0.93093 0.95088 0.94927 0.95064 0.88480 0.88674 0.97561 0.93518 0.91214 0.89954 0.83227 0.91096 0.90127 0.91385 0.91853 0.91955 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.91 37.16 0.37 -2.19 16 2 C -0.14 -3.00 5.57 -26.73 -0.15 -3.15 16 3 C 0.17 3.79 4.92 -4.04 -0.02 3.77 16 4 N -0.57 -13.32 2.52 -174.61 -0.44 -13.76 16 5 C -0.26 -6.64 9.74 -15.06 -0.15 -6.78 16 6 H 0.08 2.02 7.88 -52.48 -0.41 1.61 16 7 C 0.00 0.05 5.02 -17.43 -0.09 -0.04 16 8 N -0.89 -23.74 8.24 55.49 0.46 -23.28 16 9 Si 0.91 21.08 29.59 -169.99 -5.03 16.05 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.20 3.93 6.24 -5.19 -0.03 3.89 16 14 C 0.06 1.27 6.60 -35.40 -0.23 1.04 16 15 C -0.25 -4.47 8.62 -39.90 -0.34 -4.81 16 16 C -0.06 -1.13 6.20 -104.42 -0.65 -1.78 16 17 C -0.09 -1.39 9.82 36.01 0.35 -1.03 16 18 C -0.11 -2.22 7.18 -36.85 -0.26 -2.48 16 19 C 0.56 10.29 7.93 34.05 0.27 10.56 16 20 O -0.50 -9.30 14.53 -19.36 -0.28 -9.58 16 21 O -0.35 -5.92 10.58 -42.47 -0.45 -6.37 16 22 C 0.04 0.44 10.57 101.05 1.07 1.51 16 23 O -0.14 -3.09 10.67 4.74 0.05 -3.04 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.65 4.89 -51.93 -0.25 0.40 16 28 H 0.10 2.53 6.21 -51.93 -0.32 2.21 16 29 H 0.10 2.40 5.87 -51.93 -0.31 2.09 16 30 H 0.01 0.13 7.97 -51.93 -0.41 -0.29 16 31 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.07 1.28 8.02 -51.93 -0.42 0.87 16 33 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 34 H 0.15 2.44 7.48 -52.49 -0.39 2.04 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.27 6.45 -51.93 -0.33 0.93 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -28.95 331.94 -6.34 -35.29 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.78 Total: 1.20 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 0.13 Total: -1.50 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.02 Total: -37.04 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.68 Total: -18.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.95 -6.34 -35.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060565502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.593 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds