Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00441 * 2 1 4 4 H 1.48499 * 109.47205 * 270.00315 * 3 2 1 5 5 H 1.48502 * 109.46775 * 29.99974 * 3 2 1 6 6 H 1.48497 * 109.47499 * 149.99828 * 3 2 1 7 7 C 1.37888 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.71903 * 7 2 1 9 9 C 1.50693 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47276 * 179.72352 * 9 7 2 11 11 N 1.46901 * 109.47613 * 174.84414 * 10 9 7 12 12 C 1.40082 * 110.99887 * 75.77619 * 11 10 9 13 13 C 1.54518 * 111.51076 * 188.15235 * 12 11 10 14 14 C 1.50745 * 108.94005 * 283.99128 * 13 12 11 15 15 N 1.48066 * 112.94018 * 92.65018 * 14 13 12 16 16 C 1.38605 * 111.00263 * 192.21611 * 15 14 13 17 17 N 1.29692 * 124.94869 * 123.64812 * 16 15 14 18 18 C 1.32122 * 116.86570 * 179.81350 * 17 16 15 19 19 C 1.33324 * 114.57715 * 0.47470 * 18 17 16 20 20 S 1.70965 * 124.95113 * 303.95023 * 16 15 14 21 21 C 1.47748 * 113.78644 * 318.28251 * 15 14 13 22 22 C 1.47683 * 111.00076 * 204.42056 * 11 10 9 23 23 H 0.97002 * 120.00019 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47066 * 299.72315 * 9 7 2 25 25 H 1.09002 * 109.47743 * 59.72106 * 9 7 2 26 26 H 1.09009 * 109.47056 * 294.84778 * 10 9 7 27 27 H 1.09006 * 109.47098 * 54.84092 * 10 9 7 28 28 H 1.08998 * 109.07303 * 308.67191 * 12 11 10 29 29 H 1.09004 * 109.06890 * 67.69612 * 12 11 10 30 30 H 1.08999 * 109.55829 * 43.82395 * 13 12 11 31 31 H 1.08996 * 109.55456 * 164.04826 * 13 12 11 32 32 H 1.09002 * 108.78685 * 213.54040 * 14 13 12 33 33 H 1.09000 * 108.79200 * 331.75202 * 14 13 12 34 34 H 1.08000 * 122.71012 * 180.22408 * 18 17 16 35 35 H 1.08002 * 125.95480 * 179.75276 * 19 18 17 36 36 H 1.08999 * 108.99441 * 79.50023 * 21 15 14 37 37 H 1.09003 * 108.99551 * 198.32823 * 21 15 14 38 38 H 1.09004 * 109.73699 * 271.64013 * 22 11 10 39 39 H 1.08996 * 109.74076 * 32.33741 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0051 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0091 11 7 1.5153 -4.9311 0.1143 12 6 0.8966 -5.2739 -1.0949 13 6 -0.0369 -6.4938 -0.9277 14 6 0.8019 -7.7432 -0.8389 15 7 1.1328 -8.1183 0.5547 16 6 2.1158 -9.0950 0.5862 17 7 3.2465 -8.9910 1.2128 18 6 4.0671 -10.0239 1.1391 19 6 3.6122 -11.0426 0.4090 20 16 2.0175 -10.6093 -0.2014 21 6 1.4993 -6.9705 1.4097 22 6 2.3792 -5.9854 0.6827 23 1 -0.4850 0.8401 0.0004 24 1 0.6277 -2.5596 0.8905 25 1 0.6209 -2.5542 -0.8894 26 1 2.8059 -3.6548 -0.9438 27 1 2.9342 -3.5564 0.8289 28 1 0.3127 -4.4246 -1.4495 29 1 1.6633 -5.5116 -1.8323 30 1 -0.6232 -6.3824 -0.0157 31 1 -0.7057 -6.5616 -1.7857 32 1 0.2576 -8.5652 -1.3039 33 1 1.7291 -7.5835 -1.3892 34 1 5.0303 -10.0401 1.6273 35 1 4.1310 -11.9716 0.2240 36 1 0.5898 -6.4633 1.7316 37 1 2.0302 -7.3376 2.2881 38 1 2.9162 -6.4930 -0.1187 39 1 3.0903 -5.5425 1.3800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064401997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = 67.108310 kcal Electronic energy + Delta-G solvation = -19977.731170 eV Core-core repulsion = 17047.612433 eV Total energy + Delta-G solvation = -2930.118736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.47856 -38.88975 -36.15397 -33.17610 -32.44259 -30.54318 -29.44172 -27.59211 -25.94008 -24.58132 -23.93692 -21.34375 -20.87206 -19.99982 -19.64122 -18.37865 -16.67526 -16.29577 -15.73297 -15.39735 -14.98154 -14.90387 -14.56237 -14.35164 -13.91351 -13.32703 -13.09139 -12.85950 -12.40701 -12.23075 -12.09656 -11.68314 -11.58590 -11.26274 -11.04700 -10.99173 -10.84409 -10.57723 -10.40753 -10.04586 -9.80627 -9.71684 -9.41146 -9.36275 -9.11003 -8.32176 -8.21758 -7.63591 -5.98795 -4.01076 0.64488 1.06023 1.63374 2.68680 3.32432 3.38805 3.42158 3.47760 4.31997 4.40379 4.54098 4.81004 4.91888 5.04500 5.16265 5.33783 5.37376 5.41010 5.44098 5.45567 5.59087 5.75691 5.84400 5.87864 6.05623 6.13119 6.23452 6.31648 6.39951 6.51852 6.56096 6.84368 6.99835 7.50078 7.66979 7.72218 7.81895 7.99814 8.11306 8.44666 9.06301 9.62500 11.12506 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.003361 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.108849 B = 8328.032794 C = 8751.856812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.068 3.932 11 N -0.554 5.554 12 C 0.072 3.928 13 C -0.123 4.123 14 C 0.064 3.936 15 N -0.459 5.459 16 C 0.240 3.760 17 N -0.520 5.520 18 C 0.065 3.935 19 C -0.291 4.291 20 S 0.121 5.879 21 C 0.069 3.931 22 C 0.047 3.953 23 H 0.260 0.740 24 H 0.026 0.974 25 H 0.014 0.986 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.011 0.989 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -22.384 -1.207 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.058 4.058 11 N -0.279 5.279 12 C -0.058 4.058 13 C -0.161 4.161 14 C -0.062 4.062 15 N -0.180 5.180 16 C -0.129 4.129 17 N -0.241 5.241 18 C -0.086 4.086 19 C -0.431 4.431 20 S 0.372 5.628 21 C -0.059 4.059 22 C -0.082 4.082 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.028 0.972 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.853 -22.355 -1.068 22.457 hybrid contribution 2.578 0.995 -0.379 2.789 sum 4.431 -21.360 -1.447 21.862 Atomic orbital electron populations 1.69969 1.06003 1.26548 1.50672 1.24987 0.94824 0.99139 0.95325 0.86608 0.79877 0.83555 0.78035 1.20749 1.21194 1.19896 1.21201 0.92961 0.91125 1.50847 0.92871 1.19079 0.93931 0.89993 0.97731 1.22365 0.96684 0.88020 0.98684 1.59152 1.34603 1.04281 1.29819 1.21098 0.96411 0.98091 0.90203 1.21650 0.98125 0.92328 1.04020 1.22162 0.99879 0.99405 0.84773 1.59262 1.33483 1.12054 1.13178 1.25198 0.91441 0.98074 0.98213 1.66935 1.01730 1.29696 1.25788 1.21566 1.00098 0.88115 0.98828 1.26735 0.99502 1.06396 1.10458 1.83866 1.16796 1.11294 1.50848 1.22103 1.01067 0.87787 0.94956 1.22218 0.94495 0.92972 0.98472 0.93014 0.95565 0.96758 0.96216 0.92101 0.89477 0.97150 0.89211 0.89893 0.90320 0.93471 0.80959 0.80878 0.88163 0.89333 0.95071 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 10 C 0.07 1.44 4.97 -3.83 -0.02 1.42 16 11 N -0.55 -9.85 3.92 -239.69 -0.94 -10.79 16 12 C 0.07 1.15 4.79 -6.55 -0.03 1.12 16 13 C -0.12 -1.56 5.68 -27.06 -0.15 -1.71 16 14 C 0.06 0.76 4.63 -4.31 -0.02 0.74 16 15 N -0.46 -5.98 4.82 -176.38 -0.85 -6.83 16 16 C 0.24 3.07 6.39 -87.68 -0.56 2.51 16 17 N -0.52 -6.94 9.04 -15.21 -0.14 -7.08 16 18 C 0.07 0.69 11.34 -19.14 -0.22 0.48 16 19 C -0.29 -2.65 11.34 29.02 0.33 -2.32 16 20 S 0.12 1.22 22.66 -107.50 -2.44 -1.22 16 21 C 0.07 0.98 4.91 -4.47 -0.02 0.95 16 22 C 0.05 0.73 5.25 -4.51 -0.02 0.71 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.39 6.91 -51.93 -0.36 0.03 16 26 H 0.02 0.42 7.98 -51.92 -0.41 0.00 16 27 H 0.06 1.27 7.43 -51.93 -0.39 0.89 16 28 H 0.09 1.57 6.56 -51.93 -0.34 1.23 16 29 H 0.01 0.17 7.59 -51.93 -0.39 -0.22 16 30 H 0.09 1.22 7.19 -51.93 -0.37 0.85 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.79 7.98 -51.93 -0.41 0.38 16 33 H 0.05 0.61 6.38 -51.93 -0.33 0.28 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.10 1.48 7.20 -51.93 -0.37 1.11 16 37 H 0.09 1.27 7.13 -51.93 -0.37 0.90 16 38 H 0.03 0.50 6.60 -51.93 -0.34 0.16 16 39 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -30.67 318.24 -10.84 -41.51 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.72 Total: -1.98 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.27 Total: -8.99 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -1.19 Total: -50.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.44 Total: -1.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.67 -10.84 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064401997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.616 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds