Wall clock time and date at job start Tue Mar 31 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34767 * 117.00430 * 2 1 4 4 O 1.21542 * 119.99705 * 359.97438 * 3 2 1 5 5 C 1.47228 * 120.00529 * 180.02562 * 3 2 1 6 6 C 1.47058 * 127.19826 * 0.02562 * 5 3 2 7 7 C 1.34164 * 105.94897 * 179.97438 * 6 5 3 8 8 C 1.50703 * 125.42691 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47034 * 90.00215 * 8 7 6 10 10 C 1.46897 * 110.99978 * 66.04338 * 9 8 7 11 11 C 1.46897 * 111.00076 * 190.00034 * 9 8 7 12 12 H 1.08998 * 109.47181 * 300.00061 * 11 9 8 13 13 C 1.53002 * 109.47233 * 59.99927 * 11 9 8 14 14 C 1.50698 * 109.47260 * 179.97438 * 11 9 8 15 15 H 1.08004 * 120.00282 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00363 * 179.97438 * 14 11 9 17 17 N 1.31507 * 120.00422 * 179.97438 * 16 14 11 18 18 Si 1.86808 * 119.99613 * 0.02562 * 16 14 11 19 19 H 1.48489 * 109.47015 * 90.00000 * 18 16 14 20 20 H 1.48498 * 109.46740 * 210.00155 * 18 16 14 21 21 H 1.48500 * 109.47019 * 329.99589 * 18 16 14 22 22 O 1.34212 * 109.14282 * 0.02562 * 7 6 5 23 23 C 1.33628 * 110.92715 * 359.97438 * 22 7 6 24 24 C 1.50696 * 125.80845 * 180.02562 * 23 22 7 25 25 H 1.09000 * 109.47087 * 300.00398 * 1 2 3 26 26 H 1.09001 * 109.47052 * 59.99708 * 1 2 3 27 27 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 28 28 H 1.07999 * 127.02824 * 0.24464 * 6 5 3 29 29 H 1.08990 * 109.47103 * 210.00092 * 8 7 6 30 30 H 1.08997 * 109.47252 * 330.00253 * 8 7 6 31 31 H 1.08996 * 109.47274 * 60.00274 * 10 9 8 32 32 H 1.09003 * 109.47325 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.47497 * 299.99919 * 10 9 8 34 34 H 1.09001 * 109.46945 * 179.97438 * 13 11 9 35 35 H 1.08999 * 109.47109 * 300.00131 * 13 11 9 36 36 H 1.08998 * 109.46927 * 59.99979 * 13 11 9 37 37 H 0.97006 * 120.00410 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.47177 * 359.96996 * 24 23 22 39 39 H 1.08995 * 109.47971 * 119.97132 * 24 23 22 40 40 H 1.09006 * 109.47169 * 239.97089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5341 1.2778 -0.0006 6 6 4.4833 0.1546 -0.0017 7 6 5.7066 0.7056 -0.0024 8 6 7.0074 -0.0552 -0.0043 9 7 7.4288 -0.3013 -1.3898 10 6 7.7592 0.9575 -2.0710 11 6 8.5591 -1.2383 -1.4378 12 1 9.4009 -0.8208 -0.8854 13 6 8.1453 -2.5695 -0.8071 14 6 8.9621 -1.4663 -2.8719 15 1 8.4314 -0.9656 -3.6681 16 6 10.0084 -2.3141 -3.1675 17 7 10.3598 -2.5135 -4.4190 18 14 10.9260 -3.1808 -1.7904 19 1 10.2755 -4.4851 -1.5064 20 1 12.3346 -3.4092 -2.2013 21 1 10.8975 -2.3369 -0.5688 22 8 5.5871 2.0424 -0.0013 23 6 4.3014 2.4067 -0.0004 24 6 3.7863 3.8229 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.2445 -0.8987 -0.0060 29 1 7.7708 0.5291 0.5093 30 1 6.8722 -1.0073 0.5089 31 1 8.5720 1.4546 -1.5417 32 1 8.0675 0.7465 -3.0950 33 1 6.8828 1.6055 -2.0822 34 1 8.9839 -3.2648 -0.8431 35 1 7.8535 -2.4049 0.2301 36 1 7.3035 -2.9870 -1.3595 37 1 11.0957 -3.1103 -4.6271 38 1 4.6278 4.5156 0.0008 39 1 3.1791 3.9893 -0.8892 40 1 3.1793 3.9882 0.8907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067405983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:30 Heat of formation + Delta-G solvation = -54.996596 kcal Electronic energy + Delta-G solvation = -22159.724545 eV Core-core repulsion = 18749.265321 eV Total energy + Delta-G solvation = -3410.459225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.61504 -40.16426 -37.38650 -36.50396 -33.15823 -33.12387 -31.94983 -30.25125 -28.84857 -27.84133 -25.86827 -24.52294 -23.90214 -22.85267 -21.35334 -19.74029 -19.39282 -17.69240 -16.94456 -16.71280 -16.47454 -16.06302 -15.76710 -15.29871 -14.37706 -14.29429 -13.94915 -13.46793 -13.40435 -13.30854 -13.06327 -12.99000 -12.74539 -12.56069 -12.29765 -12.21691 -11.96361 -11.57625 -11.13023 -10.95677 -10.91560 -10.67046 -10.65041 -10.59444 -10.18109 -9.78842 -9.56266 -9.11029 -8.61682 -8.41241 -7.50922 -6.11249 -4.10822 1.11661 2.06038 2.51836 2.85308 3.04308 3.23036 3.32031 3.35213 4.34968 4.41529 4.67700 4.80724 4.87678 4.94372 5.01519 5.14127 5.21010 5.31419 5.35100 5.40854 5.56212 5.60251 5.74637 5.89935 6.01214 6.02516 6.21042 6.24599 6.31673 6.37993 6.42445 6.50874 6.70649 6.85995 7.11694 7.18947 7.48812 7.69558 7.80582 7.93824 8.57289 8.94859 9.49491 11.01289 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.003825 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.749574 B = 7318.654030 C = 7762.386068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.350 6.350 3 C 0.544 3.456 4 O -0.518 6.518 5 C -0.239 4.239 6 C -0.154 4.154 7 C 0.013 3.987 8 C 0.122 3.878 9 N -0.522 5.522 10 C 0.035 3.965 11 C 0.182 3.818 12 H 0.001 0.999 13 C -0.149 4.149 14 C -0.508 4.508 15 H 0.084 0.916 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.269 1.269 22 O -0.166 6.166 23 C 0.086 3.914 24 C -0.075 4.075 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.044 0.956 30 H 0.108 0.892 31 H 0.015 0.985 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 7.560 11.500 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.391 3.609 4 O -0.409 6.409 5 C -0.242 4.242 6 C -0.174 4.174 7 C -0.035 4.035 8 C -0.006 4.006 9 N -0.247 5.247 10 C -0.113 4.113 11 C 0.076 3.924 12 H 0.019 0.981 13 C -0.207 4.207 14 C -0.546 4.546 15 H 0.102 0.898 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.194 1.194 22 O -0.063 6.063 23 C 0.032 3.968 24 C -0.131 4.131 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.180 0.820 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.034 0.966 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.772 7.698 11.115 20.026 hybrid contribution 0.868 -0.413 1.009 1.393 sum -13.904 7.286 12.124 19.834 Atomic orbital electron populations 1.23258 0.76216 1.03702 1.02431 1.86599 1.23232 1.32464 1.84327 1.19980 0.87504 0.81299 0.72069 1.90816 1.66671 1.35936 1.47433 1.20087 0.90392 0.94179 1.19500 1.22537 0.89828 0.99471 1.05527 1.22426 0.97846 0.78814 1.04453 1.20761 0.88881 0.97452 0.93530 1.62025 1.39398 1.12515 1.10747 1.22300 0.97823 0.89908 1.01274 1.19728 0.86419 0.88322 0.97964 0.98113 1.22259 1.01302 0.99290 0.97818 1.20945 1.15708 1.27679 0.90275 0.89782 1.24914 0.96623 0.96234 0.95291 1.69871 1.28898 1.37341 1.17414 0.86886 0.78367 0.80391 0.82717 1.20430 1.22437 1.19412 1.83779 1.26600 1.25067 1.70807 1.22698 0.80661 0.96427 0.96965 1.20494 1.01137 0.86643 1.04875 0.91996 0.91873 0.88028 0.82011 0.93787 0.87386 0.96620 0.89403 0.93552 0.93778 0.95141 0.91725 0.92529 0.90174 0.88624 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.35 -4.49 10.48 -40.67 -0.43 -4.92 16 3 C 0.54 7.74 7.95 34.38 0.27 8.01 16 4 O -0.52 -7.69 15.46 -19.30 -0.30 -7.99 16 5 C -0.24 -3.49 6.32 -103.30 -0.65 -4.14 16 6 C -0.15 -2.30 10.93 -37.44 -0.41 -2.71 16 7 C 0.01 0.20 5.85 -35.74 -0.21 -0.01 16 8 C 0.12 2.00 5.30 -4.98 -0.03 1.98 16 9 N -0.52 -10.53 4.61 -237.74 -1.10 -11.63 16 10 C 0.04 0.68 9.09 60.06 0.55 1.23 16 11 C 0.18 4.16 1.65 -68.87 -0.11 4.05 16 12 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 13 C -0.15 -3.10 8.47 37.16 0.31 -2.79 16 14 C -0.51 -13.81 8.46 -34.44 -0.29 -14.10 16 15 H 0.08 2.50 6.65 -52.48 -0.35 2.15 16 16 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 17 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 18 Si 0.89 21.31 24.37 -169.99 -4.14 17.16 16 19 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 20 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 22 O -0.17 -2.51 9.90 7.72 0.08 -2.43 16 23 C 0.09 1.17 7.38 -34.94 -0.26 0.91 16 24 C -0.08 -0.75 9.14 36.00 0.33 -0.42 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.11 1.63 5.83 -51.93 -0.30 1.33 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 1.90 6.10 -51.93 -0.32 1.58 16 33 H 0.05 0.83 6.79 -51.93 -0.35 0.48 16 34 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 35 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -31.27 327.38 -5.30 -36.57 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.59 Total: -0.95 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 0.47 Total: -4.68 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.32 Total: -37.69 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.65 Total: -15.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.27 -5.30 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067405983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.429 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds