Wall clock time and date at job start Tue Mar 31 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34768 * 116.99553 * 2 1 4 4 O 1.21535 * 120.00308 * 359.97438 * 3 2 1 5 5 C 1.47239 * 119.99708 * 179.97438 * 3 2 1 6 6 C 1.47061 * 127.19928 * 359.97438 * 5 3 2 7 7 C 1.34154 * 105.94523 * 180.02562 * 6 5 3 8 8 C 1.50706 * 125.42649 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47237 * 89.99232 * 8 7 6 10 10 C 1.46898 * 111.00024 * 293.95164 * 9 8 7 11 11 C 1.46906 * 110.99498 * 170.00051 * 9 8 7 12 12 H 1.08996 * 109.46825 * 60.00655 * 11 9 8 13 13 C 1.52997 * 109.47302 * 299.99832 * 11 9 8 14 14 C 1.50708 * 109.46619 * 180.02562 * 11 9 8 15 15 H 1.07995 * 119.99755 * 0.02562 * 14 11 9 16 16 C 1.37873 * 119.99729 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99909 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46921 * 60.00420 * 18 16 14 20 20 H 1.48496 * 109.46933 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46946 * 300.00103 * 18 16 14 22 22 O 1.34217 * 109.14686 * 0.23663 * 7 6 5 23 23 C 1.33625 * 110.92689 * 359.59257 * 22 7 6 24 24 C 1.50694 * 125.81338 * 180.20462 * 23 22 7 25 25 H 1.08992 * 109.47231 * 60.00143 * 1 2 3 26 26 H 1.09003 * 109.46563 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46854 * 300.00054 * 1 2 3 28 28 H 1.08000 * 127.02554 * 0.02854 * 6 5 3 29 29 H 1.08996 * 109.46575 * 329.99179 * 8 7 6 30 30 H 1.08999 * 109.46743 * 209.99864 * 8 7 6 31 31 H 1.08994 * 109.47157 * 296.04850 * 10 9 8 32 32 H 1.09005 * 109.46959 * 56.05180 * 10 9 8 33 33 H 1.09004 * 109.46870 * 176.04285 * 10 9 8 34 34 H 1.09002 * 109.47153 * 180.02562 * 13 11 9 35 35 H 1.09001 * 109.46832 * 60.00356 * 13 11 9 36 36 H 1.09004 * 109.47261 * 300.00337 * 13 11 9 37 37 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.46757 * 270.24371 * 24 23 22 39 39 H 1.09000 * 109.47506 * 30.23495 * 24 23 22 40 40 H 1.08995 * 109.47464 * 150.24359 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5342 1.2779 0.0006 6 6 4.4834 0.1547 0.0017 7 6 5.7065 0.7058 0.0024 8 6 7.0075 -0.0549 0.0043 9 7 7.4314 -0.3034 -1.3801 10 6 6.4977 -1.2095 -2.0621 11 6 8.8024 -0.8292 -1.4244 12 1 8.8499 -1.7669 -0.8708 13 6 9.7583 0.1850 -0.7931 14 6 9.2017 -1.0706 -2.8575 15 1 8.5067 -0.8545 -3.6553 16 6 10.4546 -1.5662 -3.1498 17 7 11.3010 -1.8288 -2.1781 18 14 10.9493 -1.8661 -4.9260 19 1 10.8838 -0.5887 -5.6805 20 1 12.3352 -2.3975 -4.9708 21 1 10.0219 -2.8509 -5.5386 22 8 5.5870 2.0427 0.0071 23 6 4.3014 2.4069 0.0007 24 6 3.7861 3.8230 -0.0012 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.2446 -0.8986 0.0019 29 1 6.8713 -1.0061 0.5188 30 1 7.7698 0.5304 0.5183 31 1 6.5144 -2.1835 -1.5733 32 1 5.4902 -0.7962 -2.0144 33 1 6.7957 -1.3208 -3.1046 34 1 10.7756 -0.2051 -0.8264 35 1 9.4697 0.3599 0.2433 36 1 9.7107 1.1227 -1.3468 37 1 12.1827 -2.1772 -2.3839 38 1 3.6607 4.1653 1.0262 39 1 4.4989 4.4684 -0.5145 40 1 2.8262 3.8598 -0.5161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067405985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:33 Heat of formation + Delta-G solvation = -80.846299 kcal Electronic energy + Delta-G solvation = -22101.574400 eV Core-core repulsion = 18689.994249 eV Total energy + Delta-G solvation = -3411.580152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.73040 -41.18620 -38.85071 -37.52490 -35.06754 -34.20652 -33.15696 -31.09764 -29.93843 -28.83940 -27.39077 -26.34691 -24.84308 -24.12871 -22.50218 -21.46527 -20.55656 -18.75004 -18.37829 -17.80339 -17.57958 -17.13010 -16.84159 -16.76438 -15.93006 -15.58382 -15.48357 -14.72701 -14.51311 -14.30549 -14.15793 -14.12155 -13.79678 -13.73002 -13.52392 -13.03136 -12.95343 -12.92934 -12.79861 -12.62442 -12.32615 -12.09447 -11.96581 -11.80957 -11.75749 -11.61125 -10.93276 -10.89112 -10.50873 -9.56348 -8.99403 -8.10500 -6.21910 0.06136 0.86889 1.44423 1.45714 1.52458 1.53519 1.85697 1.94786 2.43898 3.18008 3.28863 3.50598 3.67626 3.84870 4.17117 4.24447 4.30810 4.34878 4.42090 4.54556 4.58410 4.59858 4.64501 4.70949 4.73667 4.82602 4.94116 5.03182 5.07734 5.10733 5.24408 5.25589 5.33278 5.49606 5.72144 5.76997 6.01269 6.25863 6.34408 6.65328 6.66673 6.90765 7.46946 8.95119 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.003646 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.143378 B = 7678.292928 C = 8105.038247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.546 3.454 4 O -0.529 6.529 5 C -0.259 4.259 6 C -0.163 4.163 7 C 0.006 3.994 8 C 0.123 3.877 9 N -0.545 5.545 10 C 0.038 3.962 11 C 0.218 3.782 12 H -0.025 1.025 13 C -0.125 4.125 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.958 3.042 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.271 1.271 22 O -0.171 6.171 23 C 0.093 3.907 24 C -0.082 4.082 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.067 0.933 28 H 0.171 0.829 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.921 5.415 6.205 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.394 3.606 4 O -0.422 6.422 5 C -0.261 4.261 6 C -0.183 4.183 7 C -0.043 4.043 8 C -0.004 4.004 9 N -0.270 5.270 10 C -0.110 4.110 11 C 0.112 3.888 12 H -0.007 1.007 13 C -0.183 4.183 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.783 3.217 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.197 1.197 22 O -0.067 6.067 23 C 0.039 3.961 24 C -0.138 4.138 25 H 0.083 0.917 26 H 0.149 0.851 27 H 0.086 0.914 28 H 0.188 0.812 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.705 6.230 5.984 19.700 hybrid contribution 0.325 -1.237 -0.466 1.361 sum -17.380 4.993 5.518 18.907 Atomic orbital electron populations 1.23599 0.74038 1.05820 1.02843 1.86577 1.25409 1.31656 1.83942 1.19904 0.87296 0.81611 0.71795 1.90781 1.66814 1.36275 1.48305 1.20242 0.90897 0.94250 1.20745 1.22711 0.89742 1.00027 1.05804 1.22252 0.97210 0.79485 1.05333 1.20600 0.90598 0.97272 0.91931 1.62034 1.03716 1.47993 1.13231 1.22247 0.95610 0.93487 0.99650 1.19074 0.83305 0.90930 0.95487 1.00749 1.21719 1.01766 0.98174 0.96668 1.21383 0.99522 1.42394 0.92668 0.92359 1.25653 0.96417 0.95300 1.01084 1.69995 1.07459 1.45388 1.32983 0.85616 0.77168 0.78489 0.80384 1.19933 1.20952 1.19665 1.83779 1.27478 1.24783 1.70655 1.23428 0.79961 0.97884 0.94799 1.20783 1.02305 0.84952 1.05757 0.91671 0.85106 0.91443 0.81163 0.90956 0.88895 0.96358 0.91314 0.92168 0.91847 0.94583 0.95216 0.92868 0.87298 0.88292 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.36 -8.49 10.48 -56.79 -0.60 -9.08 16 3 C 0.55 14.76 7.95 70.19 0.56 15.32 16 4 O -0.53 -15.00 14.64 19.72 0.29 -14.71 16 5 C -0.26 -7.33 6.32 -19.00 -0.12 -7.45 16 6 C -0.16 -4.70 9.40 23.65 0.22 -4.48 16 7 C 0.01 0.18 6.20 24.76 0.15 0.33 16 8 C 0.12 4.29 5.30 85.56 0.45 4.74 16 9 N -0.54 -22.92 4.61 -906.02 -4.18 -27.10 16 10 C 0.04 1.47 9.00 127.69 1.15 2.62 16 11 C 0.22 10.83 2.06 44.17 0.09 10.92 16 12 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 13 C -0.13 -5.99 8.76 71.98 0.63 -5.35 16 14 C -0.52 -28.26 7.93 25.60 0.20 -28.06 16 15 H 0.06 3.16 6.40 -2.91 -0.02 3.14 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -51.92 11.32 21.45 0.24 -51.68 16 18 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 O -0.17 -5.38 10.52 4.69 0.05 -5.33 16 23 C 0.09 2.52 7.38 25.28 0.19 2.71 16 24 C -0.08 -1.58 9.89 71.23 0.70 -0.88 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 30 H 0.09 3.23 5.83 -2.39 -0.01 3.21 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 2.33 6.08 -2.38 -0.01 2.31 16 33 H 0.06 2.51 6.24 -2.39 -0.01 2.50 16 34 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 35 H 0.04 1.48 6.20 -2.39 -0.01 1.47 16 36 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 38 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 2.08 6.49 -2.39 -0.02 2.06 16 Total: -1.00 -63.63 331.40 4.76 -58.88 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 1.05 Total: 10.48 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.88 Total: -6.69 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -3.94 Total: -78.77 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.26 Total: -29.13 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.63 4.76 -58.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067405985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.968 kcal (2) G-P(sol) polarization free energy of solvation -63.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds