Wall clock time and date at job start Tue Mar 31 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.50700 * 109.47199 * 293.80266 * 15 14 13 17 17 C 1.33644 * 122.75151 * 94.73455 * 16 15 14 18 18 S 1.76199 * 107.92681 * 179.97438 * 17 16 15 19 19 C 1.70982 * 90.28011 * 0.27161 * 18 17 16 20 20 N 1.29026 * 110.16813 * 359.84263 * 19 18 17 21 21 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 22 22 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 29 29 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 30 30 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 31 31 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 32 32 H 1.09003 * 109.47316 * 53.80231 * 15 14 13 33 33 H 1.08995 * 109.47173 * 173.80324 * 15 14 13 34 34 H 1.08005 * 126.03645 * 0.03190 * 17 16 15 35 35 H 1.07998 * 124.91460 * 179.84586 * 19 18 17 36 36 H 1.08999 * 109.48998 * 299.35229 * 21 14 13 37 37 H 1.09002 * 109.48626 * 179.28754 * 21 14 13 38 38 H 1.09001 * 109.48531 * 303.15255 * 22 11 10 39 39 H 1.09000 * 109.48854 * 63.21719 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.4182 -9.0888 2.2881 17 6 -1.6590 -8.7535 2.6540 18 16 -1.8827 -9.2485 4.3301 19 6 -0.2828 -9.8500 4.3748 20 7 0.2917 -9.6712 3.2334 21 6 1.6048 -7.3594 -0.3380 22 6 2.4174 -6.0649 -0.2600 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.8718 -3.6005 -0.9002 27 1 2.8717 -3.6084 0.8798 28 1 1.4682 -5.1797 2.0700 29 1 0.0938 -4.2759 1.3889 30 1 -0.7649 -6.3431 0.3437 31 1 -0.5748 -6.5684 2.0995 32 1 -0.6968 -8.7572 0.1985 33 1 0.8000 -9.6235 0.6195 34 1 -2.3951 -8.2660 2.0318 35 1 0.1799 -10.3126 5.2340 36 1 0.9039 -7.2992 -1.1706 37 1 2.2783 -8.2030 -0.4895 38 1 2.9469 -5.9105 -1.2002 39 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067714896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:39 Heat of formation + Delta-G solvation = 34.535194 kcal Electronic energy + Delta-G solvation = -19602.151013 eV Core-core repulsion = 16670.619801 eV Total energy + Delta-G solvation = -2931.531213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06976 -39.94330 -36.98553 -35.06541 -32.66261 -31.82731 -31.21175 -28.75962 -26.78128 -25.61131 -24.76202 -24.21762 -22.09474 -20.75648 -20.49585 -18.90884 -18.62250 -17.22044 -16.77247 -16.57658 -16.19693 -15.99085 -15.55738 -15.53445 -15.30073 -14.74588 -14.37870 -14.23032 -14.14209 -13.92430 -13.38840 -13.09326 -13.00494 -12.82038 -12.51117 -12.35661 -12.24901 -12.01042 -11.88070 -11.66927 -11.26978 -11.17372 -10.57072 -10.54790 -10.36675 -9.81916 -9.38483 -9.19086 -8.20647 -6.31799 -0.19435 0.52272 0.82263 1.40044 1.40271 1.53799 1.77997 2.39943 3.00059 3.05361 3.12798 3.30655 3.89218 4.01469 4.09496 4.19286 4.21694 4.36297 4.40726 4.44244 4.49356 4.57431 4.59052 4.67666 4.79813 4.82772 4.91137 4.96589 5.03507 5.09899 5.15858 5.44312 5.64393 5.75839 5.96184 5.97914 6.12704 6.28349 6.32037 6.84279 6.84959 7.37182 8.91676 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.003255 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.798516 B = 8599.953853 C = 9265.795849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.548 5.548 12 C 0.062 3.938 13 C 0.071 3.929 14 N -0.544 5.544 15 C 0.131 3.869 16 C 0.058 3.942 17 C -0.260 4.260 18 S 0.151 5.849 19 C 0.015 3.985 20 N -0.490 5.490 21 C 0.068 3.932 22 C 0.055 3.945 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.007 1.007 26 H 0.066 0.934 27 H 0.015 0.985 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.188 0.812 35 H 0.225 0.775 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -22.355 6.199 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.048 4.048 11 N -0.273 5.273 12 C -0.066 4.066 13 C -0.057 4.057 14 N -0.269 5.269 15 C 0.002 3.998 16 C -0.074 4.074 17 C -0.401 4.401 18 S 0.404 5.596 19 C -0.283 4.283 20 N -0.204 5.204 21 C -0.060 4.060 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.012 0.988 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.205 0.795 35 H 0.241 0.759 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.319 -22.409 6.874 23.673 hybrid contribution 0.536 1.372 -0.680 1.622 sum -2.783 -21.037 6.195 22.106 Atomic orbital electron populations 1.70116 1.07780 1.27707 1.51457 1.25960 0.95775 1.03298 0.94603 0.85376 0.79024 0.78655 0.77835 1.18643 1.20227 1.20334 1.21652 0.93493 0.92309 1.50865 0.92298 1.18902 0.94147 0.91862 0.95013 1.21965 0.95409 0.88445 0.98953 1.62218 1.28212 1.02489 1.34379 1.22053 0.96994 0.97458 0.90140 1.22039 0.93683 0.88948 1.01001 1.62051 1.27669 1.01596 1.35600 1.20548 0.97515 0.91949 0.89815 1.20244 0.90418 0.99579 0.97168 1.27187 1.02146 1.10485 1.00244 1.83907 1.15121 1.52721 1.07841 1.28931 0.96021 1.03549 0.99788 1.66110 1.36920 1.16417 1.00986 1.22141 0.97068 0.97194 0.89595 1.22228 0.94032 0.89958 1.01055 0.92743 0.98870 0.98822 0.91507 0.96660 0.95889 0.91925 0.94005 0.90207 0.91699 0.88542 0.79489 0.75852 0.93679 0.88055 0.89337 0.95203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.04 2.09 4.91 29.85 0.15 2.24 16 10 C 0.08 3.53 4.90 86.30 0.42 3.95 16 11 N -0.55 -20.80 4.71 -895.72 -4.22 -25.02 16 12 C 0.06 2.28 5.41 86.31 0.47 2.74 16 13 C 0.07 2.08 5.35 86.31 0.46 2.54 16 14 N -0.54 -14.25 4.70 -900.31 -4.23 -18.48 16 15 C 0.13 2.79 5.41 85.56 0.46 3.26 16 16 C 0.06 1.29 5.59 41.52 0.23 1.52 16 17 C -0.26 -4.80 9.79 66.78 0.65 -4.15 16 18 S 0.15 2.23 23.22 -56.49 -1.31 0.92 16 19 C 0.01 0.25 12.23 130.65 1.60 1.85 16 20 N -0.49 -11.41 10.53 -191.55 -2.02 -13.43 16 21 C 0.07 1.66 5.61 86.31 0.48 2.15 16 22 C 0.06 1.66 5.61 86.31 0.48 2.15 16 23 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 24 H -0.01 -0.41 6.49 -2.38 -0.02 -0.43 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.07 2.85 8.03 -2.38 -0.02 2.83 16 27 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 2.60 6.34 -2.39 -0.02 2.59 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 2.20 6.28 -2.39 -0.01 2.18 16 32 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.10 1.91 8.03 -2.39 -0.02 1.89 16 34 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 38 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.43 327.05 -2.34 -71.77 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.02 Total: 7.14 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 6.11 Total: -12.70 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -10.18 Total: -113.96 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.31 Total: 0.92 kcal Total: -69.43 -2.34 -71.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067714896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.306 kcal (2) G-P(sol) polarization free energy of solvation -69.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds