Wall clock time and date at job start Tue Mar 31 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99802 * 2 1 4 4 C 1.52998 * 109.46935 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47267 * 64.99850 * 4 3 2 6 6 C 1.46501 * 120.00509 * 270.00104 * 5 4 3 7 7 C 1.50691 * 109.47220 * 274.64613 * 6 5 4 8 8 H 1.08009 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00356 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99463 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00230 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47150 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46834 * 120.00044 * 11 9 7 14 14 H 1.48497 * 109.46986 * 240.00098 * 11 9 7 15 15 C 1.34778 * 119.99596 * 89.99868 * 5 4 3 16 16 O 1.21609 * 120.00405 * 3.96969 * 15 5 4 17 17 C 1.47385 * 119.99885 * 183.96903 * 15 5 4 18 18 C 1.47024 * 127.19021 * 323.98597 * 17 15 5 19 19 C 1.34177 * 105.95233 * 180.02562 * 18 17 15 20 20 C 1.50699 * 125.43740 * 179.97438 * 19 18 17 21 21 O 1.34219 * 109.12523 * 0.24736 * 19 18 17 22 22 C 1.33658 * 110.90694 * 359.58252 * 21 19 18 23 23 C 1.50692 * 125.80029 * 180.12979 * 22 21 19 24 24 H 1.08996 * 109.47422 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46889 * 299.99915 * 1 2 3 26 26 H 1.08994 * 109.47120 * 59.99784 * 1 2 3 27 27 H 1.08999 * 109.47128 * 60.00461 * 3 2 1 28 28 H 1.08991 * 109.47280 * 299.99956 * 3 2 1 29 29 H 1.09008 * 109.47259 * 305.00327 * 4 3 2 30 30 H 1.08997 * 109.47652 * 185.00297 * 4 3 2 31 31 H 1.09008 * 109.46683 * 34.64483 * 6 5 4 32 32 H 1.08999 * 109.46922 * 154.63925 * 6 5 4 33 33 H 0.97002 * 119.99847 * 180.02562 * 10 9 7 34 34 H 1.07996 * 127.02487 * 0.02791 * 18 17 15 35 35 H 1.08995 * 109.46812 * 90.00451 * 20 19 18 36 36 H 1.09003 * 109.47223 * 330.00013 * 20 19 18 37 37 H 1.08999 * 109.47043 * 210.00428 * 20 19 18 38 38 H 1.09004 * 109.47733 * 270.32629 * 23 22 21 39 39 H 1.09006 * 109.47507 * 30.32984 * 23 22 21 40 40 H 1.09002 * 109.47362 * 150.32855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1063 -0.8926 -1.3403 7 6 5.4631 -1.3082 -0.8332 8 1 6.1595 -0.5620 -0.4799 9 6 5.8156 -2.6412 -0.8201 10 7 4.9675 -3.5498 -1.2498 11 14 7.4977 -3.1563 -0.1921 12 1 8.2579 -1.9529 0.2313 13 1 7.3347 -4.0711 0.9662 14 1 8.2375 -3.8543 -1.2740 15 6 4.2633 1.3330 -2.3199 16 8 4.2256 2.5448 -2.2250 17 6 4.6226 0.7052 -3.6041 18 6 5.4038 -0.5240 -3.8047 19 6 5.4748 -0.7034 -5.1325 20 6 6.1815 -1.8406 -5.8241 21 8 4.8211 0.2951 -5.7466 22 6 4.3003 1.1437 -4.8550 23 6 3.4991 2.3787 -5.1770 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5684 0.8427 30 1 3.9785 2.1765 0.0903 31 1 3.3320 -1.3641 -0.7350 32 1 3.9955 -1.2040 -2.3790 33 1 5.2153 -4.4876 -1.2402 34 1 5.8329 -1.1540 -3.0395 35 1 5.4872 -2.6694 -5.9622 36 1 7.0234 -2.1694 -5.2148 37 1 6.5451 -1.5054 -6.7954 38 1 4.1711 3.2304 -5.2835 39 1 2.9553 2.2263 -6.1093 40 1 2.7913 2.5730 -4.3712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:49 Heat of formation + Delta-G solvation = -69.876499 kcal Electronic energy + Delta-G solvation = -23139.811531 eV Core-core repulsion = 19728.707065 eV Total energy + Delta-G solvation = -3411.104466 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92638 -38.89943 -37.30859 -34.91936 -32.81642 -32.43289 -32.30029 -29.90008 -28.82455 -27.10289 -26.00959 -24.56977 -23.17491 -22.82683 -21.42309 -19.95592 -17.63291 -16.65221 -16.48585 -15.89123 -15.85229 -15.79374 -15.15469 -14.92824 -14.52979 -14.34940 -13.72062 -13.31654 -13.02967 -12.98716 -12.61798 -12.43561 -12.29942 -12.27003 -11.98298 -11.87237 -11.68371 -11.48985 -11.05547 -11.01300 -10.89517 -10.82990 -10.44536 -10.13517 -9.67541 -9.38152 -9.15088 -8.85911 -8.44245 -7.80635 -7.56450 -6.12736 -4.19250 2.04965 2.84932 3.22391 3.30852 3.31739 3.36628 3.86066 4.03788 4.21459 4.39019 5.04900 5.18172 5.38006 5.41017 5.42954 5.53509 5.57240 5.67136 5.73008 5.73889 5.75302 5.85025 5.87632 5.88744 5.99903 6.12216 6.14452 6.32792 6.41414 6.67755 6.69466 6.93376 7.31669 7.45577 7.52154 7.65370 7.75707 7.84871 8.16066 8.43882 8.86537 9.08136 9.45445 10.92612 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.009317 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.152782 B = 3004.606923 C = 4931.931042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.579 5.579 6 C 0.230 3.770 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.586 3.414 16 O -0.579 6.579 17 C -0.216 4.216 18 C -0.149 4.149 19 C -0.050 4.050 20 C -0.062 4.062 21 O -0.184 6.184 22 C 0.035 3.965 23 C -0.064 4.064 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.190 0.810 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 5.539 -4.351 8.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.307 5.307 6 C 0.111 3.889 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.522 5.522 11 Si 0.717 3.283 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.376 3.624 16 O -0.463 6.463 17 C -0.220 4.220 18 C -0.167 4.167 19 C -0.097 4.097 20 C -0.119 4.119 21 O -0.083 6.083 22 C -0.018 4.018 23 C -0.120 4.120 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.207 0.793 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.478 5.764 -4.601 8.628 hybrid contribution 0.675 -0.386 0.647 1.012 sum -3.803 5.378 -3.953 7.682 Atomic orbital electron populations 1.22677 0.82259 1.02379 0.99100 1.88077 1.18581 1.27404 1.95176 1.23027 0.95323 0.84932 0.99636 1.21335 0.90972 0.99679 0.88237 1.47983 1.62953 1.10101 1.09685 1.19755 0.97143 0.72666 0.99355 1.21563 1.00416 0.92369 1.42883 0.92160 1.24928 0.97266 0.96356 0.95231 1.69965 1.34944 1.01264 1.46039 0.86570 0.84185 0.78759 0.78810 1.19659 1.20862 1.20795 1.17331 0.76340 0.85573 0.83206 1.90652 1.56404 1.13991 1.85221 1.21159 1.08104 0.99574 0.93185 1.23712 1.00580 0.96523 0.95933 1.22194 1.02846 0.92581 0.92110 1.20177 0.99318 0.92541 0.99839 1.83559 1.55946 1.31098 1.37647 1.22402 0.99247 0.93475 0.86628 1.20266 0.98266 0.90742 1.02763 0.89891 0.94734 0.94713 0.93197 0.93546 0.89328 0.89372 0.93518 0.93332 0.92652 0.79288 0.90530 0.89488 0.91486 0.89906 0.91124 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.90 9.46 -35.23 -0.33 -7.23 16 3 C 0.05 0.82 6.28 37.16 0.23 1.05 16 4 C 0.12 2.34 5.86 -4.04 -0.02 2.31 16 5 N -0.58 -12.98 2.42 -176.35 -0.43 -13.40 16 6 C 0.23 5.73 4.55 -5.20 -0.02 5.70 16 7 C -0.53 -13.92 7.30 -34.44 -0.25 -14.17 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.07 1.71 5.24 -17.82 -0.09 1.62 16 10 N -0.88 -24.05 13.29 55.43 0.74 -23.31 16 11 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.59 13.30 7.37 -12.54 -0.09 13.21 16 16 O -0.58 -13.42 15.72 5.27 0.08 -13.34 16 17 C -0.22 -4.71 5.53 -103.27 -0.57 -5.28 16 18 C -0.15 -3.25 8.50 -37.45 -0.32 -3.57 16 19 C -0.05 -0.95 7.28 -35.74 -0.26 -1.21 16 20 C -0.06 -0.91 10.40 36.01 0.37 -0.53 16 21 O -0.18 -3.45 10.52 7.63 0.08 -3.37 16 22 C 0.03 0.66 7.37 -34.97 -0.26 0.40 16 23 C -0.06 -0.95 9.84 36.00 0.35 -0.59 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.72 8.07 -51.92 -0.42 1.30 16 30 H 0.09 1.61 7.37 -51.93 -0.38 1.23 16 31 H 0.05 1.26 7.05 -51.92 -0.37 0.89 16 32 H 0.05 1.28 5.03 -51.93 -0.26 1.02 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.19 4.56 4.98 -52.49 -0.26 4.30 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.36 7.56 -51.93 -0.39 0.97 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -30.52 336.39 -5.48 -36.01 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.86 Total: 3.76 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 0.18 Total: 0.51 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.31 Total: -36.72 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.17 Total: -23.95 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.52 -5.48 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.870 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds