Wall clock time and date at job start Tue Mar 31 2020 07:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46806 * 2 1 4 4 O 1.45199 * 109.46779 * 119.99512 * 2 1 3 5 5 C 1.34230 * 116.99673 * 150.00287 * 4 2 1 6 6 O 1.20834 * 120.00003 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00133 * 180.02562 * 5 4 2 8 8 N 1.46900 * 109.47279 * 174.29586 * 7 5 4 9 9 C 1.46900 * 111.00190 * 287.80077 * 8 7 5 10 10 C 1.50701 * 109.46893 * 294.87460 * 9 8 7 11 11 H 1.07998 * 119.99885 * 5.35922 * 10 9 8 12 12 C 1.37871 * 120.00226 * 185.36001 * 10 9 8 13 13 N 1.31517 * 120.00266 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00237 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46983 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.46952 * 119.99951 * 14 12 10 17 17 H 1.48497 * 109.46867 * 239.99767 * 14 12 10 18 18 C 1.46901 * 111.00314 * 163.84474 * 8 7 5 19 19 C 1.50701 * 109.47321 * 190.00431 * 18 8 7 20 20 C 1.34509 * 125.79167 * 89.99802 * 19 18 8 21 21 C 1.41379 * 106.84148 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.84228 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78442 * 269.68885 * 19 18 8 24 24 H 1.09000 * 109.47360 * 300.00403 * 1 2 3 25 25 H 1.09000 * 109.47383 * 59.99993 * 1 2 3 26 26 H 1.08995 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46969 * 239.99953 * 2 1 3 28 28 H 1.08998 * 109.47395 * 60.00214 * 3 2 1 29 29 H 1.08999 * 109.46805 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46843 * 299.99775 * 3 2 1 31 31 H 1.09000 * 109.47167 * 54.29873 * 7 5 4 32 32 H 1.08996 * 109.46922 * 294.29567 * 7 5 4 33 33 H 1.08997 * 109.47300 * 54.87147 * 9 8 7 34 34 H 1.08997 * 109.47311 * 174.87731 * 9 8 7 35 35 H 0.97001 * 120.00575 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.47285 * 69.99547 * 18 8 7 37 37 H 1.09004 * 109.46789 * 309.99645 * 18 8 7 38 38 H 1.08003 * 126.57940 * 0.03335 * 20 19 18 39 39 H 1.07998 * 126.58112 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.79598 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 3.1936 -1.3169 1.0853 6 8 3.8015 -1.2996 0.0411 7 6 3.7594 -2.0495 2.2744 8 7 4.9781 -2.7653 1.8742 9 6 4.6550 -3.9263 1.0342 10 6 3.8755 -4.9305 1.8435 11 1 3.5686 -4.6907 2.8508 12 6 3.5542 -6.1553 1.2981 13 7 3.9276 -6.4472 0.0713 14 14 2.5874 -7.3998 2.3012 15 1 2.2901 -6.8321 3.6407 16 1 1.3152 -7.7165 1.6038 17 1 3.3889 -8.6402 2.4565 18 6 5.7623 -3.1677 3.0494 19 6 7.1100 -3.6746 2.6045 20 6 8.2185 -2.9288 2.4480 21 6 9.2440 -3.8037 2.0219 22 6 8.7011 -5.0320 1.9441 23 8 7.4095 -4.9485 2.3026 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8901 31 1 3.0238 -2.7635 2.6449 32 1 3.9998 -1.3343 3.0610 33 1 4.0566 -3.6032 0.1824 34 1 5.5773 -4.3846 0.6774 35 1 3.7019 -7.3090 -0.3123 36 1 5.2355 -3.9578 3.5845 37 1 5.8963 -2.3096 3.7080 38 1 8.3081 -1.8658 2.6165 39 1 10.2671 -3.5372 1.8013 40 1 9.2172 -5.9332 1.6475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:23 Heat of formation + Delta-G solvation = -65.334405 kcal Electronic energy + Delta-G solvation = -22596.007704 eV Core-core repulsion = 19185.100198 eV Total energy + Delta-G solvation = -3410.907506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88197 -40.01431 -37.18369 -35.78076 -32.95726 -32.59434 -32.25690 -30.23330 -27.91779 -27.24940 -26.41669 -24.28548 -22.46631 -21.10936 -20.90995 -19.95887 -19.46245 -17.50627 -16.77163 -16.29352 -15.93116 -15.57531 -15.40580 -14.84709 -14.24075 -14.13274 -13.92399 -13.85180 -13.19714 -12.88668 -12.52513 -12.29083 -12.20012 -12.13682 -12.09651 -11.75078 -11.63759 -11.32092 -11.09300 -10.94512 -10.85287 -10.76567 -10.46189 -10.22018 -10.02321 -9.73631 -9.61517 -9.29801 -8.42233 -7.90898 -7.34598 -6.02865 -4.12691 2.34910 2.88171 3.02527 3.24198 3.26069 3.34116 3.35789 3.70400 4.39303 4.88379 4.98755 5.01353 5.22311 5.25486 5.29134 5.33249 5.52564 5.55534 5.58113 5.67785 5.72271 5.83729 5.88245 5.96094 6.06951 6.11891 6.18972 6.22477 6.34914 6.49670 6.71357 6.93899 7.05380 7.14421 7.53043 7.76734 7.89483 7.92429 8.07291 8.21875 8.46884 8.95261 9.53637 11.03014 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.006354 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.897518 B = 4405.286616 C = 6156.066354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.167 4.167 4 O -0.362 6.362 5 C 0.466 3.534 6 O -0.486 6.486 7 C 0.068 3.932 8 N -0.525 5.525 9 C 0.185 3.815 10 C -0.556 4.556 11 H 0.058 0.942 12 C 0.071 3.929 13 N -0.883 5.883 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.136 3.864 19 C 0.029 3.971 20 C -0.216 4.216 21 C -0.223 4.223 22 C -0.048 4.048 23 O -0.154 6.154 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 10.781 4.340 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 C -0.224 4.224 4 O -0.280 6.280 5 C 0.307 3.693 6 O -0.370 6.370 7 C -0.061 4.061 8 N -0.250 5.250 9 C 0.060 3.940 10 C -0.595 4.595 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.521 5.521 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C 0.008 3.992 19 C -0.022 4.022 20 C -0.236 4.236 21 C -0.243 4.243 22 C -0.117 4.117 23 O -0.048 6.048 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.458 10.750 3.575 11.337 hybrid contribution -0.720 -1.272 0.563 1.566 sum -0.262 9.478 4.138 10.345 Atomic orbital electron populations 1.21864 0.92903 1.03207 1.02542 1.22591 0.94622 0.92409 0.87975 1.22186 1.02219 0.95551 1.02465 1.86544 1.37587 1.63277 1.40607 1.23742 0.78599 0.76182 0.90750 1.90632 1.58975 1.57010 1.30418 1.21394 0.94701 0.97776 0.92267 1.62288 1.17045 1.28533 1.17180 1.19894 0.97304 0.84629 0.92177 1.21672 1.36477 1.00886 1.00482 0.92438 1.24903 0.95595 0.97996 0.94778 1.69969 1.45562 1.22584 1.13981 0.86621 0.79852 0.81676 0.80358 1.19758 1.21000 1.20896 1.20355 0.87599 0.98898 0.92313 1.22198 0.96635 0.81322 1.02082 1.21409 0.92819 1.00208 1.09185 1.21674 1.00537 0.93364 1.08700 1.23908 0.82673 0.99970 1.05170 1.84212 1.26563 1.29406 1.64589 0.91677 0.90837 0.91574 0.89828 0.91854 0.91939 0.91174 0.89289 0.88517 0.94551 0.93955 0.92856 0.91398 0.89686 0.84185 0.84332 0.79033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.57 37.16 0.36 -1.30 16 2 C 0.08 1.13 3.18 -26.73 -0.09 1.04 16 3 C -0.17 -1.97 9.55 37.16 0.35 -1.61 16 4 O -0.36 -6.13 9.88 -39.26 -0.39 -6.52 16 5 C 0.47 9.11 7.51 36.00 0.27 9.38 16 6 O -0.49 -11.03 14.38 -18.76 -0.27 -11.30 16 7 C 0.07 1.25 5.43 -4.98 -0.03 1.22 16 8 N -0.53 -11.27 4.29 -238.97 -1.03 -12.29 16 9 C 0.19 4.88 4.62 -4.98 -0.02 4.86 16 10 C -0.56 -15.01 7.32 -34.44 -0.25 -15.26 16 11 H 0.06 1.48 5.97 -52.49 -0.31 1.17 16 12 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 13 N -0.88 -26.31 13.29 55.43 0.74 -25.58 16 14 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.14 2.56 5.27 -4.98 -0.03 2.54 16 19 C 0.03 0.58 5.88 -35.63 -0.21 0.37 16 20 C -0.22 -3.81 10.81 -39.71 -0.43 -4.24 16 21 C -0.22 -3.65 10.91 -39.70 -0.43 -4.09 16 22 C -0.05 -0.84 12.09 29.42 0.36 -0.49 16 23 O -0.15 -3.30 10.10 5.69 0.06 -3.24 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.35 7.16 -51.93 -0.37 0.98 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.71 6.44 -51.93 -0.33 1.38 16 32 H 0.10 1.40 7.80 -51.93 -0.41 0.99 16 33 H 0.04 1.07 6.58 -51.93 -0.34 0.73 16 34 H 0.04 1.25 6.88 -51.93 -0.36 0.89 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.36 6.32 -51.93 -0.33 1.04 16 37 H 0.09 1.27 7.86 -51.93 -0.41 0.87 16 38 H 0.14 2.16 8.06 -52.48 -0.42 1.73 16 39 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -33.00 336.75 -6.88 -39.89 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.80 Total: 3.38 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.25 Total: -5.68 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.29 Total: -37.87 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.60 Total: -21.06 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.00 -6.88 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.449 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds