Wall clock time and date at job start Tue Mar 31 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 C 1.52992 * 109.46783 * 239.99886 * 2 1 3 5 5 O 1.45201 * 109.46704 * 119.99869 * 2 1 3 6 6 C 1.34631 * 117.00368 * 60.00250 * 5 2 1 7 7 O 1.21520 * 119.99523 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00629 * 179.97438 * 6 5 2 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46897 * 89.99800 * 14 12 10 16 16 H 1.48496 * 109.47501 * 210.00050 * 14 12 10 17 17 H 1.48501 * 109.46824 * 330.00136 * 14 12 10 18 18 C 1.46505 * 119.99455 * 359.97438 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.09003 * 109.47288 * 300.00241 * 1 2 3 25 25 H 1.09002 * 109.47030 * 59.99747 * 1 2 3 26 26 H 1.08995 * 109.47618 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47102 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47435 * 300.00004 * 3 2 1 29 29 H 1.09000 * 109.47763 * 59.99969 * 3 2 1 30 30 H 1.09005 * 109.47243 * 299.99851 * 4 2 1 31 31 H 1.08998 * 109.47737 * 60.00253 * 4 2 1 32 32 H 1.09004 * 109.47022 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0679 -2.6657 2.4167 9 6 1.6739 -4.0667 2.5833 10 6 0.3792 -4.1366 3.3514 11 1 -0.1018 -3.2282 3.6828 12 6 -0.1913 -5.3602 3.6312 13 7 0.3942 -6.4664 3.2272 14 14 -1.7957 -5.4469 4.5839 15 1 -2.9374 -5.4103 3.6350 16 1 -1.8407 -6.7096 5.3641 17 1 -1.8845 -4.2894 5.5100 18 6 2.9139 -2.0182 3.4224 19 6 2.0445 -1.3855 4.4783 20 6 1.6155 -1.9819 5.6051 21 6 0.8341 -1.0304 6.3001 22 6 0.8327 0.0906 5.5567 23 8 1.5713 -0.1288 4.4566 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.5403 -4.5255 1.6036 34 1 2.4507 -4.6000 3.1312 35 1 -0.0074 -7.3273 3.4237 36 1 3.5634 -2.7619 3.8842 37 1 3.5228 -1.2503 2.9451 38 1 1.8281 -2.9930 5.9192 39 1 0.3341 -1.1758 7.2463 40 1 0.3267 1.0121 5.8043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082609134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:12 Heat of formation + Delta-G solvation = -63.940397 kcal Electronic energy + Delta-G solvation = -23471.501976 eV Core-core repulsion = 20060.654919 eV Total energy + Delta-G solvation = -3410.847057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99609 -40.07963 -37.06224 -35.01599 -33.56239 -32.58527 -32.37105 -29.97692 -27.45140 -27.19547 -27.09057 -25.28152 -23.39154 -21.18593 -20.91389 -20.15513 -18.75152 -17.37474 -16.90423 -16.43319 -16.06273 -15.34900 -15.31757 -14.85522 -14.32006 -14.13118 -13.85557 -13.61845 -12.97777 -12.66054 -12.35829 -12.30774 -12.25636 -12.15297 -11.91140 -11.61358 -11.58090 -11.39696 -11.17838 -11.13773 -10.92054 -10.85399 -10.62237 -10.18112 -9.92630 -9.66269 -9.31609 -9.23999 -8.43313 -8.07787 -7.77327 -6.04370 -4.06856 2.17262 2.90539 3.24317 3.31983 3.38071 3.41160 3.43117 3.77122 4.43298 4.63080 4.99594 5.01752 5.17352 5.18862 5.30483 5.38604 5.55103 5.62107 5.72557 5.74160 5.82614 5.86733 5.90623 5.95766 6.12783 6.16620 6.31679 6.51666 6.57586 6.58075 6.66860 6.78638 7.03775 7.11213 7.42358 7.44682 7.68876 7.93210 8.20915 8.29847 8.93779 9.19881 9.57993 11.04048 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.007381 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.271432 B = 3792.579652 C = 4865.867772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.369 6.369 6 C 0.647 3.353 7 O -0.561 6.561 8 N -0.577 5.577 9 C 0.258 3.742 10 C -0.518 4.518 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.200 3.800 19 C -0.023 4.023 20 C -0.174 4.174 21 C -0.215 4.215 22 C -0.056 4.056 23 O -0.172 6.172 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 13.959 -0.553 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.284 6.284 6 C 0.401 3.599 7 O -0.450 6.450 8 N -0.315 5.315 9 C 0.141 3.859 10 C -0.557 4.557 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.076 3.924 19 C -0.075 4.075 20 C -0.195 4.195 21 C -0.234 4.234 22 C -0.125 4.125 23 O -0.068 6.068 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.987 13.821 -1.110 14.735 hybrid contribution -1.338 -0.246 0.854 1.606 sum 3.649 13.576 -0.256 14.060 Atomic orbital electron populations 1.22487 0.94418 1.05362 1.01626 1.21862 0.94212 0.91238 0.82786 1.21809 1.01828 0.93210 1.02571 1.22505 1.01139 1.03886 0.96358 1.86294 1.71843 1.24729 1.45565 1.18087 0.79080 0.79864 0.82854 1.90855 1.40484 1.70060 1.43593 1.47422 1.51719 1.13821 1.18573 1.19432 0.95686 0.72088 0.98692 1.21425 1.06945 0.92653 1.34643 0.92190 1.24869 0.97452 0.95477 0.96077 1.69926 1.39499 0.97604 1.46571 0.86564 0.84010 0.77356 0.79989 1.20698 1.21205 1.19783 1.19771 0.89644 0.96202 0.86787 1.22942 1.03086 0.82789 0.98635 1.21602 1.01566 1.00684 0.95602 1.21791 1.04971 0.94190 1.02476 1.23828 1.00412 1.00922 0.87306 1.84014 1.52766 1.30441 1.39600 0.92495 0.91908 0.89027 0.91831 0.90774 0.91690 0.89125 0.91806 0.92541 0.93348 0.94237 0.92770 0.87462 0.89534 0.83264 0.84187 0.79003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 8.37 37.16 0.31 -2.59 16 2 C 0.14 2.11 1.13 -90.62 -0.10 2.01 16 3 C -0.14 -1.60 8.85 37.16 0.33 -1.27 16 4 C -0.18 -2.67 8.37 37.15 0.31 -2.36 16 5 O -0.37 -6.90 8.71 -40.30 -0.35 -7.25 16 6 C 0.65 14.22 7.70 54.05 0.42 14.64 16 7 O -0.56 -13.79 11.46 -19.29 -0.22 -14.01 16 8 N -0.58 -12.53 2.44 -182.25 -0.44 -12.97 16 9 C 0.26 6.55 5.20 -5.20 -0.03 6.53 16 10 C -0.52 -14.35 9.14 -34.44 -0.31 -14.66 16 11 H 0.06 1.73 7.65 -52.49 -0.40 1.33 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.20 3.52 5.99 -5.19 -0.03 3.49 16 19 C -0.02 -0.43 6.90 -35.62 -0.25 -0.68 16 20 C -0.17 -3.25 10.40 -39.70 -0.41 -3.66 16 21 C -0.21 -3.57 10.91 -39.71 -0.43 -4.00 16 22 C -0.06 -0.88 12.09 29.41 0.36 -0.52 16 23 O -0.17 -3.12 10.65 5.68 0.06 -3.06 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.79 5.88 -51.93 -0.31 1.49 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.63 5.88 -51.93 -0.31 1.32 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.37 7.42 -51.93 -0.39 0.99 16 34 H 0.04 0.99 7.89 -51.93 -0.41 0.58 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.11 1.65 7.89 -51.93 -0.41 1.24 16 37 H 0.09 1.34 7.38 -51.93 -0.38 0.96 16 38 H 0.15 2.80 8.06 -52.49 -0.42 2.37 16 39 H 0.14 2.00 8.06 -52.48 -0.42 1.57 16 40 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -32.30 337.39 -6.06 -38.36 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.96 Total: 3.62 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 0.06 Total: -1.39 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.29 Total: -38.33 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.51 Total: -24.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.30 -6.06 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082609134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.578 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds