Wall clock time and date at job start Tue Mar 31 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32123 * 122.71191 * 2 1 4 4 C 1.29688 * 116.86934 * 180.02562 * 3 2 1 5 5 N 1.38607 * 124.95266 * 179.97438 * 4 3 2 6 6 C 1.46490 * 120.00243 * 179.97438 * 5 4 3 7 7 C 1.53040 * 109.46481 * 275.02881 * 6 5 4 8 8 C 1.53188 * 109.31720 * 178.59985 * 7 6 5 9 9 N 1.46930 * 108.76470 * 54.65316 * 8 7 6 10 10 C 1.36934 * 120.62799 * 126.36380 * 9 8 7 11 11 H 1.08009 * 119.99845 * 207.69089 * 10 9 8 12 12 C 1.38807 * 120.00621 * 27.69603 * 10 9 8 13 13 N 1.31627 * 119.99492 * 17.35795 * 12 10 9 14 14 Si 1.86800 * 120.00315 * 197.36273 * 12 10 9 15 15 H 1.48497 * 109.47112 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47078 * 119.99739 * 14 12 10 17 17 H 1.48504 * 109.46961 * 239.99526 * 14 12 10 18 18 C 1.46924 * 118.73940 * 306.38606 * 9 8 7 19 19 C 1.53042 * 109.46038 * 154.96939 * 6 5 4 20 20 S 1.70974 * 110.09562 * 359.71812 * 4 3 2 21 21 C 1.33325 * 122.71039 * 180.02562 * 2 1 3 22 22 C 1.50699 * 125.95023 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.47114 * 269.98647 * 1 2 3 24 24 H 1.09004 * 109.46875 * 29.98535 * 1 2 3 25 25 H 1.08998 * 109.46865 * 149.98161 * 1 2 3 26 26 H 0.97004 * 119.99808 * 359.97438 * 5 4 3 27 27 H 1.09006 * 109.46345 * 35.00116 * 6 5 4 28 28 H 1.09004 * 109.49644 * 298.56534 * 7 6 5 29 29 H 1.09001 * 109.49970 * 58.66021 * 7 6 5 30 30 H 1.09003 * 109.59621 * 294.87032 * 8 7 6 31 31 H 1.09000 * 109.59118 * 174.43220 * 8 7 6 32 32 H 0.97002 * 119.99179 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.58755 * 293.82171 * 18 9 8 34 34 H 1.09000 * 109.70807 * 173.46505 * 18 9 8 35 35 H 1.08995 * 109.49786 * 301.33822 * 19 6 5 36 36 H 1.09001 * 109.49698 * 61.43904 * 19 6 5 37 37 H 1.08991 * 109.47584 * 89.99909 * 22 21 2 38 38 H 1.09003 * 109.47062 * 329.99222 * 22 21 2 39 39 H 1.09005 * 109.46898 * 209.99636 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2210 1.1117 0.0000 4 6 3.5112 0.9797 -0.0005 5 7 4.4167 2.0290 -0.0011 6 6 5.8557 1.7547 -0.0011 7 6 6.3331 1.5356 1.4363 8 6 7.8310 1.2146 1.4295 9 7 8.5404 2.2845 0.7147 10 6 9.5895 2.9396 1.3024 11 1 9.8169 3.9571 1.0206 12 6 10.3609 2.2959 2.2602 13 7 10.3210 0.9844 2.3647 14 14 11.4555 3.2908 3.4010 15 1 11.3213 4.7347 3.0810 16 1 11.0469 3.0554 4.8090 17 1 12.8690 2.8733 3.2193 18 6 8.1024 2.6385 -0.6423 19 6 6.6014 2.9432 -0.6123 20 16 3.9321 -0.6774 0.0068 21 6 2.2275 -1.1218 -0.0005 22 6 1.6791 -2.5255 -0.0006 23 1 -0.3633 -0.0002 1.0277 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5141 26 1 4.0976 2.9450 -0.0015 27 1 6.0548 0.8594 -0.5902 28 1 6.1572 2.4394 2.0198 29 1 5.7850 0.7039 1.8790 30 1 7.9987 0.2637 0.9237 31 1 8.1967 1.1552 2.4546 32 1 10.8598 0.5346 3.0343 33 1 8.2923 1.8037 -1.3170 34 1 8.6469 3.5177 -0.9867 35 1 6.2443 3.1134 -1.6279 36 1 6.4230 3.8336 -0.0094 37 1 1.5465 -2.8637 -1.0282 38 1 0.7181 -2.5402 0.5137 39 1 2.3761 -3.1879 0.5128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087302303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:26 Heat of formation + Delta-G solvation = 56.222609 kcal Electronic energy + Delta-G solvation = -19827.599317 eV Core-core repulsion = 16897.008541 eV Total energy + Delta-G solvation = -2930.590776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68415 -38.19958 -35.38529 -33.01981 -31.70742 -30.17041 -29.74615 -29.10175 -25.43748 -24.60122 -23.28941 -22.32724 -21.79467 -19.81969 -18.66996 -17.85207 -16.84148 -16.16206 -15.29515 -15.07910 -14.68638 -14.01157 -13.80907 -13.64428 -13.36975 -13.14991 -13.03511 -12.94051 -12.75164 -12.50688 -12.48006 -12.05892 -11.59219 -11.20831 -11.11090 -10.80141 -10.78613 -10.52913 -10.33888 -10.24829 -9.91435 -9.74414 -9.44295 -9.39638 -8.88740 -8.53557 -7.40230 -6.77657 -5.85542 -3.28199 1.18453 1.37925 2.00508 3.07339 3.19535 3.34283 3.42323 3.44142 4.44389 4.73861 5.07638 5.11250 5.15200 5.30100 5.35039 5.45572 5.48516 5.50081 5.57498 5.59792 5.74883 5.82813 5.91962 5.97933 6.12111 6.19184 6.34132 6.39355 6.48725 6.52900 6.63548 6.81488 6.97785 7.24960 7.54812 7.57567 7.74220 8.15288 8.37565 9.13715 9.76687 10.32341 11.23237 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.034365 B = 0.003838 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.593618 B = 7293.239063 C = 7627.647183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.108 3.892 3 N -0.564 5.564 4 C 0.329 3.671 5 N -0.687 5.687 6 C 0.155 3.845 7 C -0.154 4.154 8 C 0.173 3.827 9 N -0.592 5.592 10 C -0.256 4.256 11 H 0.067 0.933 12 C 0.004 3.996 13 N -0.901 5.901 14 Si 0.902 3.098 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.290 1.290 18 C 0.149 3.851 19 C -0.137 4.137 20 S 0.101 5.899 21 C -0.291 4.291 22 C -0.060 4.060 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.407 0.593 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.093 0.907 32 H 0.254 0.746 33 H 0.021 0.979 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 -3.822 -5.316 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 N -0.291 5.291 4 C -0.043 4.043 5 N -0.325 5.325 6 C 0.051 3.949 7 C -0.195 4.195 8 C 0.047 3.953 9 N -0.315 5.315 10 C -0.385 4.385 11 H 0.085 0.915 12 C -0.195 4.195 13 N -0.545 5.545 14 Si 0.732 3.268 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.217 1.217 18 C 0.021 3.979 19 C -0.177 4.177 20 S 0.350 5.650 21 C -0.414 4.414 22 C -0.119 4.119 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.244 0.756 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.805 -3.957 -5.204 16.184 hybrid contribution -0.381 0.918 0.667 1.197 sum -15.186 -3.039 -4.537 16.138 Atomic orbital electron populations 1.20311 0.87898 1.02792 1.02485 1.19678 0.97169 0.85963 0.99577 1.66294 1.02450 1.31547 1.28799 1.23467 0.90318 0.93366 0.97144 1.44575 1.03966 1.05319 1.78617 1.21263 0.76068 0.99281 0.98256 1.22730 1.00920 1.01289 0.94536 1.20783 0.85144 0.89620 0.99757 1.44108 1.35041 1.41621 1.10686 1.19221 1.05664 0.94670 1.18950 0.91501 1.25048 0.97757 0.95180 1.01541 1.70039 1.42494 1.06488 1.35488 0.86228 0.80041 0.79658 0.80871 1.20229 1.21509 1.21669 1.20849 0.90269 0.98418 0.88325 1.22330 0.98840 0.97043 0.99512 1.84146 1.07025 0.99469 1.74376 1.25028 0.94340 1.00361 1.21678 1.20010 1.00390 0.89644 1.01882 0.90981 0.91000 0.90985 0.75619 0.90737 0.91973 0.92893 0.96043 0.88927 0.93574 0.96075 0.92032 0.92246 0.91413 0.91681 0.91030 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.81 36.01 0.35 -0.41 16 2 C 0.11 1.51 6.74 -84.18 -0.57 0.94 16 3 N -0.56 -9.13 10.59 -11.36 -0.12 -9.25 16 4 C 0.33 5.24 8.22 -87.68 -0.72 4.52 16 5 N -0.69 -10.43 5.23 -55.75 -0.29 -10.72 16 6 C 0.16 2.54 2.36 -67.89 -0.16 2.38 16 7 C -0.15 -2.89 5.66 -26.61 -0.15 -3.04 16 8 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 9 N -0.59 -14.21 2.99 -172.32 -0.52 -14.72 16 10 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 11 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 12 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 13 N -0.90 -25.53 11.19 55.49 0.62 -24.91 16 14 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.15 2.92 6.51 -3.71 -0.02 2.90 16 19 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 20 S 0.10 1.49 21.68 -107.50 -2.33 -0.84 16 21 C -0.29 -3.86 6.57 -36.02 -0.24 -4.10 16 22 C -0.06 -0.58 9.80 36.01 0.35 -0.22 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.57 7.33 -51.93 -0.38 0.19 16 26 H 0.41 5.72 8.73 -40.82 -0.36 5.36 16 27 H 0.07 1.26 7.26 -51.93 -0.38 0.88 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.96 8.03 -51.93 -0.42 0.54 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.41 6.03 -51.93 -0.31 2.10 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.18 7.94 -51.93 -0.41 0.76 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.57 7.41 -51.93 -0.38 0.18 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -29.50 325.82 -10.30 -39.80 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.99 Total: 1.86 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.55 Total: -2.35 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.31 Total: -59.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.33 Total: -0.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.50 -10.30 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087302303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.024 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds