Wall clock time and date at job start Tue Mar 31 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32123 * 122.71191 * 2 1 4 4 C 1.29688 * 116.86934 * 180.02562 * 3 2 1 5 5 N 1.38607 * 124.95266 * 179.97438 * 4 3 2 6 6 C 1.46490 * 120.00243 * 179.97438 * 5 4 3 7 7 C 1.53040 * 109.46481 * 275.02881 * 6 5 4 8 8 C 1.53188 * 109.31720 * 178.59985 * 7 6 5 9 9 N 1.46930 * 108.76470 * 54.65316 * 8 7 6 10 10 C 1.36934 * 120.62799 * 126.36380 * 9 8 7 11 11 H 1.08009 * 119.99845 * 207.69089 * 10 9 8 12 12 C 1.38807 * 120.00621 * 27.69603 * 10 9 8 13 13 N 1.31627 * 119.99492 * 17.35795 * 12 10 9 14 14 Si 1.86800 * 120.00315 * 197.36273 * 12 10 9 15 15 H 1.48497 * 109.47112 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47078 * 119.99739 * 14 12 10 17 17 H 1.48504 * 109.46961 * 239.99526 * 14 12 10 18 18 C 1.46924 * 118.73940 * 306.38606 * 9 8 7 19 19 C 1.53042 * 109.46038 * 154.96939 * 6 5 4 20 20 S 1.70974 * 110.09562 * 359.71812 * 4 3 2 21 21 C 1.33325 * 122.71039 * 180.02562 * 2 1 3 22 22 C 1.50699 * 125.95023 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.47114 * 269.98647 * 1 2 3 24 24 H 1.09004 * 109.46875 * 29.98535 * 1 2 3 25 25 H 1.08998 * 109.46865 * 149.98161 * 1 2 3 26 26 H 0.97004 * 119.99808 * 359.97438 * 5 4 3 27 27 H 1.09006 * 109.46345 * 35.00116 * 6 5 4 28 28 H 1.09004 * 109.49644 * 298.56534 * 7 6 5 29 29 H 1.09001 * 109.49970 * 58.66021 * 7 6 5 30 30 H 1.09003 * 109.59621 * 294.87032 * 8 7 6 31 31 H 1.09000 * 109.59118 * 174.43220 * 8 7 6 32 32 H 0.97002 * 119.99179 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.58755 * 293.82171 * 18 9 8 34 34 H 1.09000 * 109.70807 * 173.46505 * 18 9 8 35 35 H 1.08995 * 109.49786 * 301.33822 * 19 6 5 36 36 H 1.09001 * 109.49698 * 61.43904 * 19 6 5 37 37 H 1.08991 * 109.47584 * 89.99909 * 22 21 2 38 38 H 1.09003 * 109.47062 * 329.99222 * 22 21 2 39 39 H 1.09005 * 109.46898 * 209.99636 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2210 1.1117 0.0000 4 6 3.5112 0.9797 -0.0005 5 7 4.4167 2.0290 -0.0011 6 6 5.8557 1.7547 -0.0011 7 6 6.3331 1.5356 1.4363 8 6 7.8310 1.2146 1.4295 9 7 8.5404 2.2845 0.7147 10 6 9.5895 2.9396 1.3024 11 1 9.8169 3.9571 1.0206 12 6 10.3609 2.2959 2.2602 13 7 10.3210 0.9844 2.3647 14 14 11.4555 3.2908 3.4010 15 1 11.3213 4.7347 3.0810 16 1 11.0469 3.0554 4.8090 17 1 12.8690 2.8733 3.2193 18 6 8.1024 2.6385 -0.6423 19 6 6.6014 2.9432 -0.6123 20 16 3.9321 -0.6774 0.0068 21 6 2.2275 -1.1218 -0.0005 22 6 1.6791 -2.5255 -0.0006 23 1 -0.3633 -0.0002 1.0277 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5141 26 1 4.0976 2.9450 -0.0015 27 1 6.0548 0.8594 -0.5902 28 1 6.1572 2.4394 2.0198 29 1 5.7850 0.7039 1.8790 30 1 7.9987 0.2637 0.9237 31 1 8.1967 1.1552 2.4546 32 1 10.8598 0.5346 3.0343 33 1 8.2923 1.8037 -1.3170 34 1 8.6469 3.5177 -0.9867 35 1 6.2443 3.1134 -1.6279 36 1 6.4230 3.8336 -0.0094 37 1 1.5465 -2.8637 -1.0282 38 1 0.7181 -2.5402 0.5137 39 1 2.3761 -3.1879 0.5128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087302303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:25 Heat of formation + Delta-G solvation = 39.269984 kcal Electronic energy + Delta-G solvation = -19828.334438 eV Core-core repulsion = 16897.008541 eV Total energy + Delta-G solvation = -2931.325897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80696 -39.67097 -36.87415 -34.50149 -33.14410 -31.75921 -31.12309 -30.19804 -27.03264 -25.78423 -24.58527 -23.91565 -23.29791 -21.31130 -19.93151 -19.01369 -18.67108 -17.27895 -16.96583 -16.29940 -16.19510 -15.57574 -15.39069 -14.85163 -14.79746 -14.73204 -14.19961 -13.81070 -13.75553 -13.71517 -13.57445 -13.21716 -13.04221 -12.82778 -12.68255 -12.61213 -12.17496 -12.09677 -11.94310 -11.73753 -11.64324 -11.41037 -10.78359 -10.55524 -10.53297 -10.03897 -8.73807 -8.53087 -7.89136 -5.33985 0.07869 0.25520 0.92414 1.46136 1.48944 1.58640 1.96306 1.99576 2.50684 3.27314 3.60086 3.70126 3.80845 3.95107 4.17639 4.24225 4.30682 4.41301 4.60889 4.72395 4.75187 4.78909 4.80215 4.85072 4.90543 4.97008 4.99500 5.05702 5.08775 5.14512 5.27842 5.43685 5.51241 5.63139 5.68341 5.73357 6.37456 6.41672 7.02662 7.12988 7.83267 8.34436 9.17838 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.034365 B = 0.003838 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.593618 B = 7293.239063 C = 7627.647183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.083 3.917 3 N -0.579 5.579 4 C 0.311 3.689 5 N -0.683 5.683 6 C 0.170 3.830 7 C -0.138 4.138 8 C 0.182 3.818 9 N -0.610 5.610 10 C -0.263 4.263 11 H 0.070 0.930 12 C -0.049 4.049 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.266 1.266 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.144 3.856 19 C -0.123 4.123 20 S 0.080 5.920 21 C -0.281 4.281 22 C -0.062 4.062 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.413 0.587 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.002 0.998 31 H 0.057 0.943 32 H 0.250 0.750 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 -3.595 -6.020 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 N -0.306 5.306 4 C -0.060 4.060 5 N -0.322 5.322 6 C 0.065 3.935 7 C -0.179 4.179 8 C 0.056 3.944 9 N -0.334 5.334 10 C -0.393 4.393 11 H 0.088 0.912 12 C -0.245 4.245 13 N -0.579 5.579 14 Si 0.793 3.207 15 H -0.190 1.190 16 H -0.219 1.219 17 H -0.220 1.220 18 C 0.018 3.982 19 C -0.163 4.163 20 S 0.328 5.672 21 C -0.403 4.403 22 C -0.121 4.121 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.251 0.749 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.765 -3.714 -5.934 18.168 hybrid contribution 0.140 0.777 0.836 1.150 sum -16.625 -2.938 -5.098 17.635 Atomic orbital electron populations 1.20419 0.85237 1.03961 1.03487 1.20301 0.98921 0.85543 0.99957 1.66322 1.02647 1.32936 1.28706 1.23595 0.90538 0.93687 0.98205 1.44265 1.03135 1.05590 1.79213 1.20942 0.76973 0.99402 0.96210 1.22470 0.97859 1.00977 0.96562 1.20509 0.87632 0.88913 0.97356 1.44352 1.34881 1.41550 1.12574 1.19556 1.05845 0.94965 1.18897 0.91219 1.25770 0.99550 0.96009 1.03149 1.70184 1.43689 1.07911 1.36157 0.85253 0.77998 0.78849 0.78616 1.19015 1.21888 1.21957 1.21015 0.92642 0.98486 0.86078 1.22143 0.96019 0.96704 1.01392 1.84219 1.09131 0.99381 1.74465 1.25519 0.92915 1.02002 1.19880 1.20184 1.01301 0.87335 1.03261 0.89959 0.91177 0.88511 0.74903 0.91057 0.92596 0.92539 0.97957 0.92492 0.94097 0.96109 0.91522 0.89156 0.91180 0.90128 0.88794 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 9.81 71.24 0.70 -0.56 16 2 C 0.08 2.16 6.74 41.40 0.28 2.44 16 3 N -0.58 -17.96 10.59 -189.86 -2.01 -19.97 16 4 C 0.31 9.60 8.22 179.32 1.47 11.07 16 5 N -0.68 -19.88 5.23 -330.28 -1.73 -21.61 16 6 C 0.17 5.39 2.36 45.02 0.11 5.50 16 7 C -0.14 -5.19 5.66 30.67 0.17 -5.02 16 8 C 0.18 8.64 5.31 86.36 0.46 9.09 16 9 N -0.61 -29.57 2.99 -699.08 -2.09 -31.67 16 10 C -0.26 -14.07 9.59 84.03 0.81 -13.27 16 11 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 12 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 13 N -0.93 -54.50 11.19 21.65 0.24 -54.25 16 14 Si 0.96 44.30 29.59 68.60 2.03 46.33 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 18 C 0.14 5.54 6.51 86.36 0.56 6.10 16 19 C -0.12 -3.74 5.55 30.67 0.17 -3.57 16 20 S 0.08 2.28 21.68 -56.49 -1.22 1.05 16 21 C -0.28 -6.87 6.57 24.57 0.16 -6.71 16 22 C -0.06 -1.00 9.80 71.24 0.70 -0.30 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.10 1.19 7.33 -2.39 -0.02 1.17 16 26 H 0.41 10.95 8.73 -92.71 -0.81 10.14 16 27 H 0.07 2.36 7.26 -2.38 -0.02 2.34 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 3.09 6.03 -2.39 -0.01 3.08 16 32 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 2.47 7.94 -2.39 -0.02 2.45 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.13 7.41 -2.39 -0.02 1.12 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -64.16 325.82 1.46 -62.70 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.24 Total: 14.93 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.00 Total: 2.48 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -5.59 Total: -127.50 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.22 Total: 1.05 kcal Total: -64.16 1.46 -62.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087302303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.970 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds