Wall clock time and date at job start Tue Mar 31 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34893 * 117.00648 * 2 1 4 4 O 1.21622 * 119.99533 * 0.02562 * 3 2 1 5 5 C 1.46469 * 120.00172 * 179.97438 * 3 2 1 6 6 O 1.34935 * 125.99584 * 359.97193 * 5 3 2 7 7 C 1.33915 * 109.37821 * 180.02562 * 6 5 3 8 8 C 1.50704 * 125.60684 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47081 * 160.02638 * 8 7 6 10 10 C 1.52992 * 109.47325 * 280.03263 * 8 7 6 11 11 N 1.46898 * 109.46738 * 40.03276 * 8 7 6 12 12 C 1.46901 * 111.00443 * 56.04446 * 11 8 7 13 13 C 1.46906 * 110.99820 * 179.97438 * 11 8 7 14 14 C 1.50696 * 109.47351 * 169.99890 * 13 11 8 15 15 H 1.08007 * 119.99780 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00506 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99253 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00341 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47238 * 59.99702 * 18 16 14 20 20 H 1.48503 * 109.47230 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47102 * 299.99648 * 18 16 14 22 22 C 1.35162 * 108.78155 * 0.27049 * 7 6 5 23 23 C 1.36644 * 125.99381 * 180.02562 * 5 3 2 24 24 C 1.50696 * 126.64971 * 359.95477 * 23 5 3 25 25 H 1.09000 * 109.47997 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47060 * 300.00473 * 1 2 3 27 27 H 1.09004 * 109.47087 * 59.99466 * 1 2 3 28 28 H 1.09000 * 109.47552 * 59.99663 * 10 8 7 29 29 H 1.08998 * 109.47057 * 179.97438 * 10 8 7 30 30 H 1.09007 * 109.46908 * 299.99721 * 10 8 7 31 31 H 1.09002 * 109.47401 * 183.95136 * 12 11 8 32 32 H 1.09001 * 109.46874 * 63.95149 * 12 11 8 33 33 H 1.09004 * 109.46970 * 303.95282 * 12 11 8 34 34 H 1.08997 * 109.46995 * 289.99871 * 13 11 8 35 35 H 1.09001 * 109.46848 * 49.99877 * 13 11 8 36 36 H 0.96999 * 119.99606 * 179.97438 * 17 16 14 37 37 H 1.08002 * 126.43736 * 179.69229 * 22 7 6 38 38 H 1.09005 * 109.47270 * 90.00372 * 24 23 5 39 39 H 1.08997 * 109.47723 * 209.99912 * 24 23 5 40 40 H 1.08999 * 109.47433 * 330.00422 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2018 0.0000 4 8 1.4022 2.2219 0.0005 5 6 3.5272 1.2784 0.0006 6 8 4.3762 0.2296 0.0017 7 6 5.6377 0.6791 0.0024 8 6 6.8755 -0.1806 0.0043 9 1 7.7252 0.4052 -0.3464 10 6 7.1497 -0.6767 1.4253 11 7 6.6735 -1.3316 -0.8858 12 6 6.3147 -0.8926 -2.2410 13 6 7.8627 -2.1936 -0.9097 14 6 7.5380 -3.4778 -1.6283 15 1 6.5473 -3.6375 -2.0277 16 6 8.5055 -4.4490 -1.7759 17 7 9.7120 -4.2543 -1.2899 18 14 8.1031 -6.0405 -2.6672 19 1 7.6850 -5.7362 -4.0593 20 1 9.3053 -6.9120 -2.6913 21 1 6.9993 -6.7384 -1.9602 22 6 5.6181 2.0306 0.0079 23 6 4.2714 2.4244 0.0011 24 6 3.7473 3.8373 0.0003 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 6.3000 -1.2624 1.7761 29 1 8.0447 -1.2988 1.4265 30 1 7.2996 0.1775 2.0858 31 1 6.1025 -1.7637 -2.8609 32 1 7.1441 -0.3326 -2.6730 33 1 5.4313 -0.2557 -2.1947 34 1 8.6724 -1.6813 -1.4293 35 1 8.1703 -2.4167 0.1120 36 1 10.3925 -4.9377 -1.3934 37 1 6.4775 2.6846 0.0145 38 1 3.6199 4.1782 1.0278 39 1 4.4558 4.4874 -0.5129 40 1 2.7870 3.8684 -0.5144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091590213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:18 Heat of formation + Delta-G solvation = -64.832871 kcal Electronic energy + Delta-G solvation = -22318.582433 eV Core-core repulsion = 18907.696675 eV Total energy + Delta-G solvation = -3410.885757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.71185 -40.21100 -37.25400 -36.64743 -34.05926 -32.94150 -31.48342 -29.60432 -28.49057 -27.53071 -26.88125 -24.54220 -24.00749 -22.06739 -21.30302 -20.49707 -18.95428 -18.19956 -17.03621 -16.84787 -16.54627 -15.79697 -15.19360 -15.03576 -14.51898 -14.18818 -13.77320 -13.56757 -13.36088 -13.13565 -13.10008 -12.87981 -12.66613 -12.38686 -12.20797 -11.99725 -11.76204 -11.46999 -11.20412 -11.04248 -10.94518 -10.90186 -10.72326 -10.63097 -10.39104 -9.84080 -9.62891 -9.27644 -8.48085 -8.42920 -7.39064 -6.05940 -4.06686 0.87289 2.30333 2.33944 2.84783 3.07441 3.33061 3.36859 3.40367 4.36158 4.52039 4.70751 4.73924 4.93226 4.96089 5.03414 5.29605 5.33978 5.36116 5.48663 5.52568 5.57112 5.57821 5.71700 5.91538 5.95423 5.99041 6.11559 6.21161 6.22205 6.30049 6.41125 6.60128 6.69743 6.97778 7.21797 7.23804 7.61573 7.74033 7.99452 8.09351 8.45816 8.99956 9.57306 11.05005 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.004217 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.723708 B = 6638.956221 C = 7532.317176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.557 3.443 4 O -0.497 6.497 5 C -0.096 4.096 6 O -0.126 6.126 7 C 0.084 3.916 8 C 0.146 3.854 9 H 0.068 0.932 10 C -0.144 4.144 11 N -0.532 5.532 12 C 0.037 3.963 13 C 0.189 3.811 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.242 4.242 23 C -0.065 4.065 24 C -0.095 4.095 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.015 0.985 33 H 0.043 0.957 34 H -0.007 1.007 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 13.029 3.719 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.261 6.261 3 C 0.404 3.596 4 O -0.388 6.388 5 C -0.146 4.146 6 O -0.019 6.019 7 C 0.029 3.971 8 C 0.037 3.963 9 H 0.086 0.914 10 C -0.202 4.202 11 N -0.257 5.257 12 C -0.111 4.111 13 C 0.064 3.936 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.262 4.262 23 C -0.067 4.067 24 C -0.152 4.152 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.011 0.989 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.311 12.618 3.921 18.059 hybrid contribution 0.466 -0.291 -0.841 1.005 sum -11.844 12.326 3.080 17.370 Atomic orbital electron populations 1.23323 0.75745 1.04055 1.02525 1.86727 1.23630 1.31804 1.83923 1.19183 0.85583 0.81955 0.72910 1.90876 1.64577 1.35773 1.47532 1.20373 0.87883 0.86282 1.20056 1.84255 1.15026 1.33412 1.69238 1.23237 0.84116 0.93348 0.96378 1.20403 0.87647 0.91368 0.96866 0.91401 1.21917 1.03899 1.01194 0.93165 1.62296 1.40427 1.14541 1.08439 1.22242 0.97871 1.00199 0.90801 1.19882 0.84627 0.91049 0.97999 1.21093 0.97595 1.00369 1.35553 0.91835 1.24962 0.94920 0.98661 0.95940 1.69938 1.02971 1.34846 1.46118 0.86547 0.77645 0.83019 0.80137 1.20292 1.21356 1.20112 1.21431 0.97014 0.94273 1.13441 1.20541 0.92431 0.95478 0.98266 1.20449 1.02010 0.89833 1.02889 0.87747 0.91752 0.91724 0.91381 0.90088 0.92640 0.90283 0.96656 0.93868 0.98890 0.94115 0.92832 0.82510 0.90657 0.91116 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.42 16 2 O -0.34 -4.93 10.58 -42.47 -0.45 -5.38 16 3 C 0.56 8.44 7.93 34.05 0.27 8.71 16 4 O -0.50 -7.56 14.53 -19.36 -0.28 -7.84 16 5 C -0.10 -1.53 7.18 -36.84 -0.26 -1.79 16 6 O -0.13 -2.23 10.22 4.74 0.05 -2.18 16 7 C 0.08 1.37 4.55 -35.40 -0.16 1.21 16 8 C 0.15 2.55 2.53 -68.87 -0.17 2.38 16 9 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 10 C -0.14 -2.34 8.97 37.15 0.33 -2.00 16 11 N -0.53 -11.31 4.61 -237.73 -1.10 -12.41 16 12 C 0.04 0.74 9.09 60.07 0.55 1.29 16 13 C 0.19 4.72 4.54 -4.97 -0.02 4.70 16 14 C -0.51 -13.99 8.51 -34.44 -0.29 -14.28 16 15 H 0.06 1.75 7.10 -52.48 -0.37 1.38 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16 18 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.24 -3.36 10.72 -39.90 -0.43 -3.79 16 23 C -0.07 -0.91 6.20 -104.42 -0.65 -1.56 16 24 C -0.10 -1.05 9.81 36.00 0.35 -0.70 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.41 6.20 -51.93 -0.32 1.08 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.67 6.86 -51.93 -0.36 1.31 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.04 0.80 6.49 -51.93 -0.34 0.46 16 34 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 35 H 0.04 1.06 5.83 -51.93 -0.30 0.75 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.99 6.45 -51.93 -0.33 0.66 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -30.89 336.82 -6.31 -37.20 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.81 Total: -2.60 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 0.48 Total: -2.93 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.36 Total: -37.74 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.68 Total: -15.41 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.89 -6.31 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091590213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.636 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds