Wall clock time and date at job start Tue Mar 31 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34893 * 117.00648 * 2 1 4 4 O 1.21622 * 119.99533 * 0.02562 * 3 2 1 5 5 C 1.46469 * 120.00172 * 179.97438 * 3 2 1 6 6 O 1.34935 * 125.99584 * 359.97193 * 5 3 2 7 7 C 1.33915 * 109.37821 * 180.02562 * 6 5 3 8 8 C 1.50704 * 125.60684 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47081 * 160.02638 * 8 7 6 10 10 C 1.52992 * 109.47325 * 280.03263 * 8 7 6 11 11 N 1.46898 * 109.46738 * 40.03276 * 8 7 6 12 12 C 1.46901 * 111.00443 * 56.04446 * 11 8 7 13 13 C 1.46906 * 110.99820 * 179.97438 * 11 8 7 14 14 C 1.50696 * 109.47351 * 169.99890 * 13 11 8 15 15 H 1.08007 * 119.99780 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00506 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99253 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00341 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47238 * 59.99702 * 18 16 14 20 20 H 1.48503 * 109.47230 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47102 * 299.99648 * 18 16 14 22 22 C 1.35162 * 108.78155 * 0.27049 * 7 6 5 23 23 C 1.36644 * 125.99381 * 180.02562 * 5 3 2 24 24 C 1.50696 * 126.64971 * 359.95477 * 23 5 3 25 25 H 1.09000 * 109.47997 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47060 * 300.00473 * 1 2 3 27 27 H 1.09004 * 109.47087 * 59.99466 * 1 2 3 28 28 H 1.09000 * 109.47552 * 59.99663 * 10 8 7 29 29 H 1.08998 * 109.47057 * 179.97438 * 10 8 7 30 30 H 1.09007 * 109.46908 * 299.99721 * 10 8 7 31 31 H 1.09002 * 109.47401 * 183.95136 * 12 11 8 32 32 H 1.09001 * 109.46874 * 63.95149 * 12 11 8 33 33 H 1.09004 * 109.46970 * 303.95282 * 12 11 8 34 34 H 1.08997 * 109.46995 * 289.99871 * 13 11 8 35 35 H 1.09001 * 109.46848 * 49.99877 * 13 11 8 36 36 H 0.96999 * 119.99606 * 179.97438 * 17 16 14 37 37 H 1.08002 * 126.43736 * 179.69229 * 22 7 6 38 38 H 1.09005 * 109.47270 * 90.00372 * 24 23 5 39 39 H 1.08997 * 109.47723 * 209.99912 * 24 23 5 40 40 H 1.08999 * 109.47433 * 330.00422 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2018 0.0000 4 8 1.4022 2.2219 0.0005 5 6 3.5272 1.2784 0.0006 6 8 4.3762 0.2296 0.0017 7 6 5.6377 0.6791 0.0024 8 6 6.8755 -0.1806 0.0043 9 1 7.7252 0.4052 -0.3464 10 6 7.1497 -0.6767 1.4253 11 7 6.6735 -1.3316 -0.8858 12 6 6.3147 -0.8926 -2.2410 13 6 7.8627 -2.1936 -0.9097 14 6 7.5380 -3.4778 -1.6283 15 1 6.5473 -3.6375 -2.0277 16 6 8.5055 -4.4490 -1.7759 17 7 9.7120 -4.2543 -1.2899 18 14 8.1031 -6.0405 -2.6672 19 1 7.6850 -5.7362 -4.0593 20 1 9.3053 -6.9120 -2.6913 21 1 6.9993 -6.7384 -1.9602 22 6 5.6181 2.0306 0.0079 23 6 4.2714 2.4244 0.0011 24 6 3.7473 3.8373 0.0003 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 6.3000 -1.2624 1.7761 29 1 8.0447 -1.2988 1.4265 30 1 7.2996 0.1775 2.0858 31 1 6.1025 -1.7637 -2.8609 32 1 7.1441 -0.3326 -2.6730 33 1 5.4313 -0.2557 -2.1947 34 1 8.6724 -1.6813 -1.4293 35 1 8.1703 -2.4167 0.1120 36 1 10.3925 -4.9377 -1.3934 37 1 6.4775 2.6846 0.0145 38 1 3.6199 4.1782 1.0278 39 1 4.4558 4.4874 -0.5129 40 1 2.7870 3.8684 -0.5144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091590213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:18 Heat of formation + Delta-G solvation = -83.871197 kcal Electronic energy + Delta-G solvation = -22319.407997 eV Core-core repulsion = 18907.696675 eV Total energy + Delta-G solvation = -3411.711321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.89458 -41.29809 -38.85032 -37.72778 -35.16787 -34.90765 -33.02480 -30.82301 -29.48635 -29.30369 -27.90399 -26.29108 -25.38420 -23.47751 -22.52632 -21.91659 -20.24432 -19.30768 -18.60985 -18.08659 -17.94136 -17.02796 -16.80140 -16.54642 -16.16679 -15.45413 -15.31947 -14.68272 -14.56117 -14.36373 -14.21875 -14.00091 -13.93348 -13.70817 -13.43156 -13.25404 -13.07657 -12.93349 -12.89503 -12.62739 -12.59613 -12.37725 -12.21624 -11.89947 -11.76988 -11.67101 -11.32480 -10.69605 -10.56826 -9.64545 -9.10266 -8.18902 -6.27132 -0.28593 1.16016 1.28890 1.42588 1.44738 1.52683 1.72715 1.97148 2.41533 3.08674 3.14743 3.44091 3.68734 3.83656 4.14153 4.16616 4.23236 4.31274 4.31884 4.39348 4.49845 4.60215 4.62981 4.68837 4.77056 4.81439 4.87339 4.99031 4.99744 5.06841 5.17504 5.20362 5.24127 5.31745 5.41712 5.65247 5.84877 6.06493 6.26162 6.51092 6.57809 6.86614 7.41461 8.91656 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.004217 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.723708 B = 6638.956221 C = 7532.317176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.556 3.444 4 O -0.503 6.503 5 C -0.118 4.118 6 O -0.153 6.153 7 C 0.062 3.938 8 C 0.146 3.854 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.545 5.545 12 C 0.045 3.955 13 C 0.204 3.796 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.221 4.221 23 C -0.059 4.059 24 C -0.093 4.093 25 H 0.129 0.871 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.057 0.943 34 H -0.030 1.030 35 H 0.027 0.973 36 H 0.265 0.735 37 H 0.189 0.811 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 14.219 3.673 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.402 3.598 4 O -0.394 6.394 5 C -0.168 4.168 6 O -0.048 6.048 7 C 0.008 3.992 8 C 0.037 3.963 9 H 0.099 0.901 10 C -0.196 4.196 11 N -0.270 5.270 12 C -0.103 4.103 13 C 0.079 3.921 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.240 4.240 23 C -0.061 4.061 24 C -0.149 4.149 25 H 0.147 0.853 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.076 0.924 34 H -0.012 1.012 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.206 0.794 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.059 13.822 3.876 19.406 hybrid contribution 0.611 -0.596 -0.791 1.164 sum -12.447 13.226 3.085 18.422 Atomic orbital electron populations 1.23672 0.73386 1.06005 1.03303 1.86707 1.26102 1.31566 1.83653 1.19188 0.85546 0.82172 0.72851 1.90858 1.64668 1.35872 1.48040 1.20787 0.88320 0.86651 1.21012 1.84203 1.15751 1.34684 1.70193 1.23064 0.83376 0.94062 0.98730 1.20448 0.89088 0.90367 0.96367 0.90059 1.21868 1.02298 1.02069 0.93343 1.62146 1.38599 1.16617 1.09674 1.22135 0.98595 0.99560 0.89998 1.19527 0.85291 0.90894 0.96399 1.21409 0.97402 1.01716 1.35867 0.92474 1.25779 0.94731 1.01953 0.96619 1.70045 1.03830 1.35993 1.47167 0.85531 0.77593 0.78949 0.79119 1.19510 1.20691 1.19650 1.21766 0.97947 0.93366 1.10940 1.20962 0.92255 0.96330 0.96584 1.20537 1.02067 0.88328 1.03957 0.85314 0.90875 0.91056 0.92780 0.91892 0.89220 0.92162 0.96104 0.92405 1.01209 0.95457 0.92649 0.79415 0.89276 0.88628 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 113.37 1.20 1.72 16 2 O -0.36 -10.27 10.58 -56.70 -0.60 -10.87 16 3 C 0.56 16.51 7.93 69.97 0.55 17.06 16 4 O -0.50 -14.79 14.53 19.44 0.28 -14.50 16 5 C -0.12 -3.66 7.18 24.04 0.17 -3.49 16 6 O -0.15 -5.39 10.22 -4.88 -0.05 -5.44 16 7 C 0.06 1.93 4.55 24.98 0.11 2.04 16 8 C 0.15 5.00 2.53 44.17 0.11 5.11 16 9 H 0.08 2.58 8.13 -2.39 -0.02 2.56 16 10 C -0.14 -4.44 8.97 71.98 0.65 -3.80 16 11 N -0.55 -23.49 4.61 -906.04 -4.17 -27.67 16 12 C 0.05 1.82 9.09 127.69 1.16 2.98 16 13 C 0.20 10.49 4.54 85.55 0.39 10.88 16 14 C -0.53 -29.53 8.51 25.60 0.22 -29.31 16 15 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 16 C 0.01 0.43 5.46 84.65 0.46 0.89 16 17 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 18 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.22 -5.52 10.72 22.06 0.24 -5.28 16 23 C -0.06 -1.52 6.20 -19.74 -0.12 -1.64 16 24 C -0.09 -1.77 9.81 71.23 0.70 -1.07 16 25 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 2.23 6.20 -2.39 -0.01 2.21 16 30 H 0.09 2.21 8.14 -2.38 -0.02 2.20 16 31 H 0.06 2.59 6.86 -2.39 -0.02 2.58 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 2.12 6.49 -2.38 -0.02 2.11 16 34 H -0.03 -1.63 8.12 -2.39 -0.02 -1.65 16 35 H 0.03 1.47 5.83 -2.39 -0.01 1.46 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.60 6.45 -2.39 -0.02 1.58 16 Total: -1.00 -66.92 336.82 4.65 -62.27 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.04 Total: 8.31 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.84 Total: -3.90 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.89 Total: -81.99 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.37 Total: -30.81 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -66.92 4.65 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091590213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.597 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds