Wall clock time and date at job start Tue Mar 31 2020 05:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34896 * 117.00300 * 2 1 4 4 O 1.21626 * 119.99714 * 359.97438 * 3 2 1 5 5 C 1.46469 * 120.00051 * 179.97438 * 3 2 1 6 6 O 1.34933 * 125.99535 * 0.34339 * 5 3 2 7 7 C 1.33919 * 109.38024 * 180.13608 * 6 5 3 8 8 C 1.50693 * 125.61061 * 179.82713 * 7 6 5 9 9 H 1.09000 * 109.47066 * 199.69287 * 8 7 6 10 10 C 1.53006 * 109.47244 * 79.69341 * 8 7 6 11 11 N 1.46906 * 109.47155 * 319.69439 * 8 7 6 12 12 C 1.46893 * 111.00136 * 66.04479 * 11 8 7 13 13 C 1.46901 * 110.99853 * 190.00173 * 11 8 7 14 14 C 1.50701 * 109.46921 * 169.99766 * 13 11 8 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.35170 * 108.77593 * 359.56104 * 7 6 5 23 23 C 1.36640 * 125.99470 * 179.97438 * 5 3 2 24 24 C 1.50707 * 126.64878 * 0.07864 * 23 5 3 25 25 H 1.08998 * 109.47072 * 60.00723 * 1 2 3 26 26 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47064 * 300.00792 * 1 2 3 28 28 H 1.09001 * 109.47141 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.47044 * 299.99959 * 10 8 7 30 30 H 1.09002 * 109.46733 * 60.00005 * 10 8 7 31 31 H 1.08999 * 109.47439 * 183.95618 * 12 11 8 32 32 H 1.08997 * 109.47257 * 303.95746 * 12 11 8 33 33 H 1.09006 * 109.46808 * 63.95302 * 12 11 8 34 34 H 1.09002 * 109.47401 * 49.99794 * 13 11 8 35 35 H 1.09001 * 109.46874 * 289.99807 * 13 11 8 36 36 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 37 37 H 1.08002 * 126.43143 * 180.27880 * 22 7 6 38 38 H 1.09000 * 109.46797 * 269.97581 * 24 23 5 39 39 H 1.08999 * 109.47027 * 29.97585 * 24 23 5 40 40 H 1.08996 * 109.47177 * 149.98145 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5271 1.2785 0.0006 6 8 4.3762 0.2298 -0.0054 7 6 5.6377 0.6793 0.0003 8 6 6.8754 -0.1803 0.0001 9 1 7.7247 0.4057 0.3515 10 6 7.1513 -0.6769 -1.4206 11 7 6.6725 -1.3311 0.8904 12 6 5.6280 -2.2225 0.3687 13 6 7.9298 -2.0608 1.1023 14 6 7.7427 -3.0753 2.2009 15 1 6.7855 -3.1689 2.6922 16 6 8.7933 -3.8846 2.5781 17 7 8.6299 -4.7702 3.5364 18 14 10.4487 -3.7231 1.7278 19 1 11.2811 -2.7277 2.4500 20 1 11.1370 -5.0389 1.7305 21 1 10.2441 -3.2743 0.3271 22 6 5.6180 2.0308 0.0003 23 6 4.2713 2.4245 0.0001 24 6 3.7471 3.8375 0.0007 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 8.0469 -1.2982 -1.4207 29 1 6.3020 -1.2628 -1.7720 30 1 7.3019 0.1770 -2.0811 31 1 5.4487 -3.0280 1.0808 32 1 4.7081 -1.6568 0.2210 33 1 5.9521 -2.6441 -0.5828 34 1 8.7140 -1.3588 1.3857 35 1 8.2137 -2.5704 0.1815 36 1 9.3691 -5.3394 3.8021 37 1 6.4775 2.6848 0.0000 38 1 3.6204 4.1783 -1.0269 39 1 2.7865 3.8684 0.5148 40 1 4.4553 4.4875 0.5143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091590214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:22 Heat of formation + Delta-G solvation = -58.881546 kcal Electronic energy + Delta-G solvation = -22411.178076 eV Core-core repulsion = 19000.550387 eV Total energy + Delta-G solvation = -3410.627689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.75389 -40.23444 -37.62590 -36.67129 -34.12201 -32.91831 -31.50696 -29.40994 -28.53126 -27.73551 -27.01860 -25.48206 -23.89793 -21.95696 -21.24632 -20.30289 -19.07169 -18.24981 -17.05047 -16.98965 -16.81753 -15.81357 -15.36490 -15.05080 -14.43942 -14.12777 -13.95500 -13.56617 -13.41636 -13.25282 -13.14042 -13.07556 -12.79355 -12.51703 -12.32791 -12.24203 -11.95271 -11.75769 -11.27951 -11.07365 -10.96822 -10.96792 -10.70402 -10.51253 -10.34289 -9.94039 -9.63713 -9.35182 -8.61094 -8.51004 -7.49824 -6.08194 -4.06189 0.84952 2.27583 2.31565 2.83750 3.02202 3.25046 3.32559 3.33029 4.37769 4.40786 4.69605 4.71147 4.85921 4.93811 5.01827 5.21691 5.23260 5.27945 5.34209 5.39883 5.52747 5.56883 5.62417 5.81174 5.84034 5.91626 6.00534 6.13735 6.17433 6.20882 6.32712 6.40709 6.70068 6.81185 6.94575 6.98799 7.48789 7.59296 7.77089 7.90677 8.59584 9.00946 9.52321 11.04885 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.004196 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.362768 B = 6671.955627 C = 7364.469541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.557 3.443 4 O -0.496 6.496 5 C -0.098 4.098 6 O -0.133 6.133 7 C 0.086 3.914 8 C 0.144 3.856 9 H 0.112 0.888 10 C -0.186 4.186 11 N -0.522 5.522 12 C 0.025 3.975 13 C 0.161 3.839 14 C -0.511 4.511 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.874 3.126 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.268 1.268 22 C -0.236 4.236 23 C -0.063 4.063 24 C -0.096 4.096 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.026 0.974 35 H -0.005 1.005 36 H 0.264 0.736 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 13.309 -10.587 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.263 6.263 3 C 0.403 3.597 4 O -0.387 6.387 5 C -0.147 4.147 6 O -0.028 6.028 7 C 0.031 3.969 8 C 0.034 3.966 9 H 0.130 0.870 10 C -0.244 4.244 11 N -0.245 5.245 12 C -0.123 4.123 13 C 0.036 3.964 14 C -0.549 4.549 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.255 4.255 23 C -0.065 4.065 24 C -0.153 4.153 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.074 0.926 37 H 0.176 0.824 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.497 13.294 -10.014 19.677 hybrid contribution 1.136 -0.226 -1.064 1.573 sum -9.361 13.067 -11.078 19.522 Atomic orbital electron populations 1.23323 0.75685 1.04055 1.02572 1.86705 1.23697 1.31876 1.84007 1.19192 0.85603 0.81956 0.72940 1.90880 1.64578 1.35762 1.47447 1.20399 0.87839 0.86424 1.20032 1.84289 1.15293 1.33353 1.69891 1.23141 0.83716 0.93639 0.96391 1.20565 0.89624 0.93329 0.93059 0.87028 1.22505 1.03201 1.02072 0.96672 1.62263 1.10521 1.08891 1.42865 1.22517 0.94044 0.97234 0.98490 1.20237 0.86360 0.93368 0.96453 1.20999 0.99988 1.16404 1.17490 0.90039 1.24889 0.98505 0.95000 0.94843 1.69890 1.32245 1.22375 1.29226 0.86882 0.84731 0.77715 0.80538 1.20089 1.21170 1.19260 1.21380 0.97001 0.94149 1.12959 1.20547 0.92462 0.95466 0.97989 1.20460 1.02107 0.89853 1.02831 0.91778 0.87748 0.91648 0.90842 0.91606 0.92126 0.90018 0.91743 0.96139 0.95650 0.98720 0.92604 0.82407 0.90698 0.89780 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.78 10.58 -42.47 -0.45 -5.23 16 3 C 0.56 8.25 7.93 34.05 0.27 8.52 16 4 O -0.50 -7.46 14.53 -19.36 -0.28 -7.74 16 5 C -0.10 -1.51 7.18 -36.85 -0.26 -1.78 16 6 O -0.13 -2.24 7.79 4.74 0.04 -2.20 16 7 C 0.09 1.33 6.04 -35.40 -0.21 1.12 16 8 C 0.14 2.32 2.77 -68.86 -0.19 2.13 16 9 H 0.11 1.65 7.92 -51.93 -0.41 1.24 16 10 C -0.19 -2.64 8.42 37.16 0.31 -2.33 16 11 N -0.52 -10.67 4.69 -237.73 -1.12 -11.78 16 12 C 0.02 0.49 8.48 60.06 0.51 1.00 16 13 C 0.16 3.74 3.36 -4.97 -0.02 3.73 16 14 C -0.51 -14.22 9.07 -34.44 -0.31 -14.54 16 15 H 0.08 2.50 7.35 -52.49 -0.39 2.11 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 18 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 22 C -0.24 -3.16 10.72 -39.90 -0.43 -3.59 16 23 C -0.06 -0.86 6.20 -104.42 -0.65 -1.51 16 24 C -0.10 -1.05 9.82 36.01 0.35 -0.69 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 29 H 0.06 0.96 6.42 -51.93 -0.33 0.62 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.77 6.86 -51.93 -0.36 1.41 16 32 H 0.06 1.19 5.06 -51.93 -0.26 0.92 16 33 H 0.02 0.37 6.46 -51.93 -0.34 0.04 16 34 H 0.03 0.58 7.36 -51.93 -0.38 0.20 16 35 H 0.00 -0.11 6.12 -51.93 -0.32 -0.43 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.99 6.45 -51.93 -0.33 0.66 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -31.77 327.91 -6.02 -37.79 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.60 Total: -0.89 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 0.34 Total: -4.66 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.34 Total: -38.20 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.69 Total: -15.17 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.77 -6.02 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091590214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.092 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds