Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 N 1.46507 * 109.46868 * 180.02562 * 3 2 1 5 5 C 1.36931 * 119.99919 * 269.99612 * 4 3 2 6 6 H 1.07995 * 120.00365 * 326.30823 * 5 4 3 7 7 C 1.38812 * 119.99944 * 146.30505 * 5 4 3 8 8 N 1.31627 * 120.00034 * 337.51654 * 7 5 4 9 9 Si 1.86797 * 120.00234 * 157.51671 * 7 5 4 10 10 H 1.48500 * 109.47340 * 90.00216 * 9 7 5 11 11 H 1.48504 * 109.47453 * 210.00076 * 9 7 5 12 12 H 1.48501 * 109.46932 * 329.99932 * 9 7 5 13 13 C 1.46502 * 119.99815 * 89.99917 * 4 3 2 14 14 C 1.50695 * 109.46924 * 85.33212 * 13 4 3 15 15 C 1.35172 * 125.61082 * 90.00183 * 14 13 4 16 16 C 1.40312 * 107.12496 * 179.97438 * 15 14 13 17 17 C 1.36634 * 106.70598 * 0.02562 * 16 15 14 18 18 C 1.46471 * 125.99833 * 180.02562 * 17 16 15 19 19 O 1.21622 * 119.99568 * 359.97438 * 18 17 16 20 20 O 1.34897 * 120.00169 * 179.97438 * 18 17 16 21 21 C 1.45199 * 117.00141 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.47171 * 179.97438 * 21 20 18 23 23 O 1.33916 * 125.60957 * 269.69122 * 14 13 4 24 24 H 1.09000 * 109.47091 * 299.99879 * 1 2 3 25 25 H 1.09000 * 109.47305 * 60.00082 * 1 2 3 26 26 H 1.09008 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47170 * 239.99632 * 2 1 3 28 28 H 1.09000 * 109.47305 * 119.99918 * 2 1 3 29 29 H 1.08995 * 109.47532 * 60.00442 * 3 2 1 30 30 H 1.09000 * 109.47358 * 299.99594 * 3 2 1 31 31 H 0.96995 * 119.99845 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46662 * 205.32702 * 13 4 3 33 33 H 1.08994 * 109.47271 * 325.33025 * 13 4 3 34 34 H 1.07997 * 126.43743 * 359.97438 * 15 14 13 35 35 H 1.08005 * 126.64515 * 180.02562 * 16 15 14 36 36 H 1.08999 * 109.46845 * 300.00145 * 21 20 18 37 37 H 1.08999 * 109.47116 * 60.00020 * 21 20 18 38 38 H 1.08999 * 109.47008 * 60.00048 * 22 21 20 39 39 H 1.09003 * 109.47067 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47431 * 299.99880 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.7866 1.9611 2.0419 7 6 5.4034 0.7754 1.2854 8 7 5.6922 -0.1955 0.4449 9 14 6.6263 1.2559 2.6132 10 1 6.3682 0.4553 3.8370 11 1 8.0069 0.9944 2.1328 12 1 6.4760 2.6999 2.9254 13 6 4.2369 1.4426 -1.2697 14 6 4.3877 2.8588 -1.7624 15 6 5.4153 3.6878 -1.4725 16 6 5.1646 4.9019 -2.1295 17 6 3.9811 4.7511 -2.7955 18 6 3.3227 5.7658 -3.6215 19 8 3.8329 6.8609 -3.7611 20 8 2.1506 5.4855 -4.2275 21 6 1.5550 6.5388 -5.0301 22 6 0.2409 6.0390 -5.6335 23 8 3.5287 3.5011 -2.5641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5398 -0.6618 0.5154 32 1 5.2231 1.0030 -1.1203 33 1 3.6864 0.8582 -2.0068 34 1 6.2688 3.4586 -0.8518 35 1 5.7867 5.7847 -2.1122 36 1 1.3596 7.4078 -4.4019 37 1 2.2399 6.8164 -5.8314 38 1 -0.4442 5.7612 -4.8325 39 1 -0.2060 6.8296 -6.2364 40 1 0.4367 5.1702 -6.2618 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -63.399736 kcal Electronic energy + Delta-G solvation = -22182.723173 eV Core-core repulsion = 18771.899561 eV Total energy + Delta-G solvation = -3410.823612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.09378 -40.02194 -36.56707 -36.33985 -33.12190 -32.48749 -31.90414 -31.23710 -29.69523 -26.55896 -25.66354 -23.82509 -22.50288 -21.81103 -21.07821 -20.22825 -19.74685 -18.12428 -17.11823 -16.74704 -16.63408 -15.51549 -15.04464 -14.67395 -14.28423 -14.02799 -13.87749 -13.60672 -13.20032 -13.08856 -12.80752 -12.58654 -12.40779 -12.28072 -12.03934 -11.73057 -11.56387 -11.25148 -11.09506 -10.85758 -10.76518 -10.61741 -10.59515 -10.50413 -10.24988 -10.09168 -9.76203 -9.50604 -8.68726 -8.00242 -6.90939 -6.04108 -3.52561 1.24446 2.54018 2.83450 3.25585 3.28852 3.35602 3.39881 3.47331 4.35119 4.80141 4.82434 4.95561 5.12640 5.15265 5.32557 5.40120 5.49740 5.59168 5.63459 5.72185 5.79662 5.82953 6.06737 6.09809 6.23863 6.24642 6.35022 6.43300 6.47780 6.53326 6.59493 6.66062 6.95680 6.98420 7.14125 7.25588 7.53345 7.66216 7.89730 8.27527 8.93574 9.56763 10.12269 11.00523 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.005032 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.525388 B = 5563.571763 C = 6918.687061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.144 3.856 4 N -0.569 5.569 5 C -0.260 4.260 6 H 0.067 0.933 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.898 3.102 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.203 3.797 14 C 0.062 3.938 15 C -0.235 4.235 16 C -0.092 4.092 17 C -0.114 4.114 18 C 0.559 3.441 19 O -0.507 6.507 20 O -0.349 6.349 21 C 0.062 3.938 22 C -0.153 4.153 23 O -0.157 6.157 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.139 0.861 33 H 0.049 0.951 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 6.919 -8.271 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.019 3.981 4 N -0.287 5.287 5 C -0.389 4.389 6 H 0.084 0.916 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.210 1.210 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.075 3.925 14 C 0.005 3.995 15 C -0.255 4.255 16 C -0.112 4.112 17 C -0.164 4.164 18 C 0.407 3.593 19 O -0.398 6.398 20 O -0.266 6.266 21 C -0.012 4.012 22 C -0.210 4.210 23 O -0.052 6.052 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.783 7.023 -8.450 12.913 hybrid contribution 0.866 0.529 0.734 1.252 sum -5.917 7.553 -7.716 12.313 Atomic orbital electron populations 1.21753 0.97555 1.00443 1.00822 1.22018 0.93265 1.00225 1.02253 1.21038 0.84279 0.93966 0.98867 1.43866 0.99951 1.83311 1.01586 1.19127 1.03002 1.26898 0.89896 0.91554 1.25110 1.00460 0.94908 0.98230 1.69911 1.23770 1.19990 1.39117 0.86379 0.80659 0.78891 0.81462 1.21038 1.21187 1.20081 1.20108 1.03213 0.82597 0.86587 1.25795 0.86783 0.99017 0.87932 1.21578 1.03167 0.93296 1.07426 1.21904 0.94379 0.99327 0.95636 1.20376 0.98818 0.86410 1.10811 1.19254 0.78621 0.84923 0.76547 1.90884 1.65245 1.22626 1.60996 1.86694 1.35700 1.44204 1.59977 1.23039 0.95006 0.89156 0.93974 1.21804 0.95230 1.02506 1.01416 1.84165 1.45548 1.21831 1.53689 0.93389 0.93534 0.93726 0.92847 0.91710 0.93604 0.94340 0.93012 0.84419 0.93278 0.82842 0.82919 0.91165 0.91190 0.91323 0.90275 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.60 6.26 -26.73 -0.17 -2.76 16 3 C 0.14 2.95 5.69 -4.04 -0.02 2.93 16 4 N -0.57 -13.32 2.44 -174.61 -0.43 -13.75 16 5 C -0.26 -6.62 9.49 -15.06 -0.14 -6.76 16 6 H 0.07 1.71 7.92 -52.49 -0.42 1.29 16 7 C 0.01 0.33 4.92 -17.43 -0.09 0.25 16 8 N -0.89 -23.23 11.33 55.49 0.63 -22.60 16 9 Si 0.90 20.20 29.61 -169.99 -5.03 15.17 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.20 4.50 5.77 -5.19 -0.03 4.47 16 14 C 0.06 1.29 6.89 -35.40 -0.24 1.05 16 15 C -0.23 -4.62 10.77 -39.89 -0.43 -5.05 16 16 C -0.09 -1.68 10.62 -39.38 -0.42 -2.10 16 17 C -0.11 -2.17 7.18 -36.85 -0.26 -2.43 16 18 C 0.56 9.84 7.93 34.05 0.27 10.11 16 19 O -0.51 -9.28 16.66 -19.36 -0.32 -9.60 16 20 O -0.35 -5.49 10.23 -42.48 -0.43 -5.92 16 21 C 0.06 0.71 6.20 37.16 0.23 0.94 16 22 C -0.15 -1.30 10.29 37.16 0.38 -0.92 16 23 O -0.16 -3.20 10.67 4.73 0.05 -3.15 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 30 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.14 3.33 5.32 -51.93 -0.28 3.06 16 33 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 35 H 0.15 2.41 8.06 -52.48 -0.42 1.98 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -27.77 347.49 -7.01 -34.78 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.16 Total: 1.98 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.55 Total: -2.14 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.20 Total: -36.35 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.71 Total: -18.67 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.77 -7.01 -34.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.616 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds