Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47456 * 2 1 4 4 C 1.33327 * 122.70995 * 125.00191 * 3 2 1 5 5 S 1.76159 * 108.09621 * 180.02562 * 4 3 2 6 6 C 1.70968 * 90.35822 * 0.02562 * 5 4 3 7 7 N 1.38607 * 124.94645 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00692 * 0.02562 * 7 6 5 9 9 C 1.53047 * 109.45893 * 275.03181 * 8 7 6 10 10 C 1.53194 * 109.31033 * 178.59875 * 9 8 7 11 11 N 1.46929 * 108.76492 * 54.65240 * 10 9 8 12 12 C 1.36937 * 120.62753 * 126.36060 * 11 10 9 13 13 H 1.07994 * 120.00207 * 331.86148 * 12 11 10 14 14 C 1.38809 * 119.99994 * 151.85736 * 12 11 10 15 15 N 1.31627 * 120.00003 * 343.07500 * 14 12 11 16 16 Si 1.86800 * 120.00278 * 163.06734 * 14 12 11 17 17 H 1.48494 * 109.47364 * 90.00167 * 16 14 12 18 18 H 1.48505 * 109.47299 * 210.00572 * 16 14 12 19 19 H 1.48502 * 109.46766 * 330.00399 * 16 14 12 20 20 C 1.46921 * 118.73896 * 306.38306 * 11 10 9 21 21 C 1.53039 * 109.46462 * 154.97321 * 8 7 6 22 22 N 1.29683 * 110.09744 * 0.02562 * 6 5 4 23 23 H 1.08996 * 109.47217 * 300.00183 * 1 2 3 24 24 H 1.09008 * 109.47493 * 59.99406 * 1 2 3 25 25 H 1.09000 * 109.47482 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47021 * 240.00560 * 2 1 3 27 27 H 1.08994 * 109.47604 * 120.00417 * 2 1 3 28 28 H 1.08000 * 125.95085 * 359.97438 * 4 3 2 29 29 H 0.97006 * 119.99499 * 180.02562 * 7 6 5 30 30 H 1.09003 * 109.45942 * 35.00081 * 8 7 6 31 31 H 1.08998 * 109.49452 * 298.55983 * 9 8 7 32 32 H 1.08994 * 109.49653 * 58.65888 * 9 8 7 33 33 H 1.09002 * 109.59831 * 294.86624 * 10 9 8 34 34 H 1.09003 * 109.70308 * 174.50212 * 10 9 8 35 35 H 0.97002 * 119.99877 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.58330 * 293.81714 * 20 11 10 37 37 H 1.09000 * 109.70289 * 173.46950 * 20 11 10 38 38 H 1.08997 * 109.49456 * 301.34234 * 21 8 7 39 39 H 1.08997 * 109.49552 * 61.40395 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8792 1.8855 0.9189 5 16 3.2066 3.5778 0.5553 6 6 2.1693 3.4980 -0.8015 7 7 1.9027 4.5529 -1.6601 8 6 2.5306 5.8573 -1.4353 9 6 1.6992 6.6568 -0.4295 10 6 2.3773 8.0058 -0.1704 11 7 2.5852 8.6851 -1.4566 12 6 2.1260 9.9600 -1.6544 13 1 1.2622 10.3132 -1.1110 14 6 2.7709 10.7982 -2.5534 15 7 3.9891 10.5125 -2.9622 16 14 1.9101 12.3317 -3.1834 17 1 2.2123 13.4739 -2.2838 18 1 2.3898 12.6409 -4.5543 19 1 0.4436 12.0993 -3.2127 20 6 3.2945 7.9704 -2.5264 21 6 2.6063 6.6217 -2.7589 22 7 1.6676 2.3071 -0.9094 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2919 1.3227 1.7432 29 1 1.3003 4.4275 -2.4100 30 1 3.5367 5.7129 -1.0414 31 1 0.7006 6.8231 -0.8337 32 1 1.6260 6.1011 0.5053 33 1 3.3388 7.8441 0.3169 34 1 1.7424 8.6196 0.4686 35 1 4.4399 11.0985 -3.5901 36 1 4.3307 7.8059 -2.2312 37 1 3.2650 8.5586 -3.4436 38 1 3.1787 6.0410 -3.4822 39 1 1.5991 6.7878 -3.1411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104355117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = 56.599566 kcal Electronic energy + Delta-G solvation = -19729.195191 eV Core-core repulsion = 16798.620761 eV Total energy + Delta-G solvation = -2930.574430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72794 -38.19971 -35.39009 -33.31475 -32.01846 -30.34753 -29.63952 -28.46424 -25.20346 -24.39021 -22.93928 -22.27436 -21.82300 -20.04291 -18.96804 -17.77503 -16.91678 -16.20858 -15.28671 -15.05891 -14.80332 -14.33939 -14.08603 -13.88044 -13.66188 -13.24658 -13.05231 -12.95335 -12.52481 -12.48644 -11.90355 -11.59244 -11.34653 -11.17785 -11.03771 -10.80520 -10.76808 -10.68550 -10.43019 -10.22118 -9.95717 -9.72318 -9.60617 -9.43028 -8.97267 -8.54557 -7.52655 -6.77438 -5.86747 -3.29296 1.18163 1.36709 1.99726 3.05945 3.17048 3.33903 3.41145 3.43342 4.43929 4.62762 4.97514 5.09353 5.21390 5.25980 5.32819 5.35828 5.42477 5.49933 5.60638 5.68125 5.78040 5.91470 6.01096 6.12546 6.14584 6.22002 6.31856 6.36370 6.40366 6.48551 6.66850 6.85156 6.94652 7.21056 7.48834 7.56870 7.73519 8.12216 8.37011 9.13096 9.75927 10.32002 11.22365 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.044086 B = 0.003498 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.973572 B = 8003.409918 C = 8135.032692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.117 3.883 4 C -0.322 4.322 5 S 0.093 5.907 6 C 0.332 3.668 7 N -0.685 5.685 8 C 0.155 3.845 9 C -0.146 4.146 10 C 0.148 3.852 11 N -0.592 5.592 12 C -0.255 4.255 13 H 0.066 0.934 14 C 0.004 3.996 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.175 3.825 21 C -0.145 4.145 22 N -0.563 5.563 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.167 0.833 29 H 0.408 0.592 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.059 0.941 35 H 0.255 0.745 36 H 0.022 0.978 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -16.992 5.415 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.015 4.015 4 C -0.464 4.464 5 S 0.341 5.659 6 C -0.040 4.040 7 N -0.323 5.323 8 C 0.051 3.949 9 C -0.187 4.187 10 C 0.021 3.979 11 N -0.314 5.314 12 C -0.385 4.385 13 H 0.084 0.916 14 C -0.195 4.195 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.204 1.204 20 C 0.048 3.952 21 C -0.185 4.185 22 N -0.289 5.289 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.185 0.815 29 H 0.245 0.755 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.313 -15.980 5.345 17.008 hybrid contribution -0.866 -0.099 -0.642 1.083 sum -3.179 -16.079 4.703 17.052 Atomic orbital electron populations 1.21646 0.94487 1.01209 1.02666 1.20101 0.96523 0.89480 1.02540 1.19785 0.95071 0.96309 0.90317 1.26173 1.12846 0.97774 1.09578 1.84114 1.47205 1.10249 1.24361 1.23630 0.95428 0.90465 0.94481 1.44632 1.50914 1.07415 1.29347 1.21274 0.95639 0.79655 0.98295 1.22538 1.00288 0.98157 0.97760 1.20878 0.96974 0.90782 0.89312 1.44085 1.66725 1.12940 1.07694 1.19168 1.07517 0.88446 1.23322 0.91596 1.25057 0.95031 0.97715 1.01714 1.70017 1.10628 1.38840 1.35199 0.86298 0.79250 0.83029 0.78205 1.21324 1.21516 1.20449 1.20759 0.92220 0.87680 0.94546 1.22537 1.02444 0.99395 0.94123 1.66225 1.32016 1.00008 1.30695 0.92944 0.91777 0.92662 0.90520 0.90605 0.81522 0.75491 0.90679 0.91631 0.92753 0.96120 0.92234 0.93514 0.95957 0.88782 0.92361 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.81 37.15 0.36 -1.01 16 2 C -0.05 -0.46 6.43 -27.89 -0.18 -0.64 16 3 C 0.12 1.55 6.07 -84.18 -0.51 1.04 16 4 C -0.32 -4.03 11.04 29.02 0.32 -3.70 16 5 S 0.09 1.28 21.69 -107.50 -2.33 -1.06 16 6 C 0.33 5.05 8.22 -87.69 -0.72 4.33 16 7 N -0.69 -10.16 5.23 -55.74 -0.29 -10.45 16 8 C 0.16 2.50 2.36 -67.89 -0.16 2.34 16 9 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 10 C 0.15 2.96 6.52 -3.71 -0.02 2.93 16 11 N -0.59 -14.15 2.99 -172.33 -0.52 -14.67 16 12 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 13 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 14 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 15 N -0.90 -25.37 11.19 55.49 0.62 -24.75 16 16 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.17 3.92 5.30 -3.72 -0.02 3.90 16 21 C -0.14 -2.56 5.55 -26.62 -0.15 -2.70 16 22 N -0.56 -8.62 10.40 -11.36 -0.12 -8.74 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.72 8.07 -51.92 -0.42 0.30 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 28 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.41 5.69 8.73 -40.82 -0.36 5.33 16 30 H 0.08 1.25 7.26 -51.93 -0.38 0.87 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -28.65 327.39 -10.26 -38.90 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.07 Total: 2.78 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.46 Total: -3.05 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.30 Total: -58.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.33 Total: -1.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.65 -10.26 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104355117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.504 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds