Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91918 * 2 1 4 4 C 1.31776 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.33635 * 114.50289 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.03805 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46901 * 90.02014 * 6 5 4 8 8 C 1.46952 * 110.99924 * 293.79546 * 7 6 5 9 9 C 1.53044 * 109.36655 * 176.81678 * 8 7 6 10 10 N 1.46954 * 109.36804 * 58.40111 * 9 8 7 11 11 C 1.46897 * 111.00234 * 176.81667 * 10 9 8 12 12 C 1.50698 * 109.46835 * 293.79766 * 11 10 9 13 13 H 1.08001 * 120.00505 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00265 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99531 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00486 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47064 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47460 * 119.99681 * 16 14 12 19 19 H 1.48502 * 109.46942 * 240.00169 * 16 14 12 20 20 C 1.46959 * 110.88027 * 300.68171 * 10 9 8 21 21 C 1.46962 * 110.99694 * 169.99765 * 7 6 5 22 22 S 1.70977 * 124.91502 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47170 * 269.95235 * 1 2 3 24 24 H 1.09004 * 109.47224 * 29.95207 * 1 2 3 25 25 H 1.09002 * 109.47569 * 149.95396 * 1 2 3 26 26 H 1.08004 * 122.74701 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47049 * 210.01560 * 6 5 4 28 28 H 1.08991 * 109.47647 * 330.01681 * 6 5 4 29 29 H 1.09006 * 109.48995 * 296.78668 * 8 7 6 30 30 H 1.09004 * 109.48924 * 56.84546 * 8 7 6 31 31 H 1.09002 * 109.48646 * 298.43585 * 9 8 7 32 32 H 1.08997 * 109.50975 * 178.38510 * 9 8 7 33 33 H 1.09000 * 109.47506 * 53.79674 * 11 10 9 34 34 H 1.09003 * 109.47045 * 173.79940 * 11 10 9 35 35 H 0.96998 * 120.00222 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.48896 * 299.35517 * 20 10 9 37 37 H 1.08996 * 109.48958 * 179.28671 * 20 10 9 38 38 H 1.08990 * 109.49094 * 303.15407 * 21 7 6 39 39 H 1.09002 * 109.48729 * 63.22013 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3574 -0.8994 -0.0029 7 7 5.8203 -1.0628 1.3818 8 6 5.9094 0.2358 2.0639 9 6 6.3172 0.0160 3.5225 10 7 7.6060 -0.6886 3.5673 11 6 8.0689 -0.8519 4.9518 12 6 8.3825 0.4999 5.5393 13 1 8.2507 1.3913 4.9440 14 6 8.8377 0.5989 6.8371 15 7 8.9978 -0.4864 7.5623 16 14 9.2258 2.2746 7.5656 17 1 8.9634 3.3279 6.5520 18 1 8.3686 2.5077 8.7555 19 1 10.6545 2.3206 7.9680 20 6 7.5170 -1.9872 2.8852 21 6 7.1092 -1.7674 1.4265 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 -0.0009 1.0277 24 1 -0.3634 0.8904 -0.5131 25 1 -0.3634 -0.8896 -0.5145 26 1 4.2532 1.7000 -0.0002 27 1 5.4054 -1.8591 -0.5175 28 1 5.9946 -0.1796 -0.5164 29 1 6.6550 0.8570 1.5674 30 1 4.9398 0.7326 2.0282 31 1 5.5580 -0.5824 4.0261 32 1 6.4119 0.9795 4.0232 33 1 7.2883 -1.3322 5.5418 34 1 8.9663 -1.4705 4.9643 35 1 9.3177 -0.4169 8.4754 36 1 6.7714 -2.6084 3.3815 37 1 8.4866 -2.4839 2.9208 38 1 7.0144 -2.7311 0.9262 39 1 7.8685 -1.1690 0.9229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105902382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = 54.898689 kcal Electronic energy + Delta-G solvation = -19653.696239 eV Core-core repulsion = 16723.048054 eV Total energy + Delta-G solvation = -2930.648185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91698 -38.65177 -35.41433 -32.87430 -32.11976 -30.46848 -29.83070 -27.60269 -25.65366 -24.16007 -23.25376 -22.74831 -21.35803 -19.48358 -19.15555 -18.01898 -16.32184 -16.03332 -15.48437 -14.99607 -14.80394 -14.51119 -14.24298 -14.17501 -13.81782 -13.40844 -13.34063 -13.01844 -12.69098 -12.39042 -12.24940 -12.02524 -11.69535 -11.33935 -11.14600 -10.87588 -10.76035 -10.64660 -10.41352 -10.29924 -9.76487 -9.68426 -9.33180 -9.16621 -8.87227 -8.44059 -8.20668 -7.23697 -6.02646 -4.03980 0.59557 1.24514 1.68114 2.72239 3.31120 3.38465 3.43299 4.02239 4.10954 4.42660 4.74731 4.87611 4.93746 5.00706 5.18566 5.22664 5.26241 5.33135 5.43081 5.52113 5.60922 5.61598 5.76127 5.80219 5.88319 6.05050 6.08706 6.16792 6.40993 6.57398 6.68810 7.11810 7.13703 7.33689 7.36911 7.64476 7.80274 8.08704 8.20272 8.55079 9.03821 9.60345 11.08319 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024966 B = 0.003669 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.249140 B = 7630.167535 C = 8213.520919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.033 3.967 3 N -0.474 5.474 4 C 0.037 3.963 5 C -0.203 4.203 6 C 0.130 3.870 7 N -0.536 5.536 8 C 0.056 3.944 9 C 0.069 3.931 10 N -0.538 5.538 11 C 0.193 3.807 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.057 3.943 21 C 0.062 3.938 22 S 0.136 5.864 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.172 0.828 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.086 0.914 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 -2.741 -17.583 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.245 4.245 3 N -0.189 5.189 4 C -0.115 4.115 5 C -0.324 4.324 6 C 0.000 4.000 7 N -0.261 5.261 8 C -0.072 4.072 9 C -0.060 4.060 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.072 4.072 21 C -0.066 4.066 22 S 0.391 5.609 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.189 0.811 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.009 0.991 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.822 -3.357 -17.396 22.471 hybrid contribution 0.924 1.560 0.641 1.923 sum -12.899 -1.796 -16.755 21.221 Atomic orbital electron populations 1.20411 0.85419 1.03920 1.03865 1.27004 1.01745 0.91403 1.04328 1.66263 1.04872 1.31730 1.16022 1.21686 0.91079 0.95876 1.02816 1.25830 0.99749 0.95994 1.10856 1.20375 0.87949 1.00679 0.91035 1.62199 1.29181 1.21546 1.13192 1.22313 0.99963 0.89185 0.95738 1.21966 0.90350 1.00320 0.93337 1.62294 1.26230 1.17369 1.20481 1.19703 0.94784 0.97535 0.81135 1.21192 1.43488 0.92849 0.97004 0.91884 1.24994 0.95776 0.96791 0.97080 1.69969 1.46867 1.27623 1.09347 0.86453 0.77922 0.84125 0.79000 1.19663 1.21094 1.21014 1.22059 0.99870 0.92575 0.92738 1.22174 0.88702 0.97683 0.98001 1.83915 0.97377 1.12019 1.67634 0.89649 0.89465 0.90282 0.81079 0.89746 0.92591 0.94170 0.91099 0.95419 0.89537 0.99076 0.95207 0.92983 0.95120 0.90867 0.91073 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 36.01 0.38 -0.18 16 2 C 0.03 0.36 7.39 -13.46 -0.10 0.26 16 3 N -0.47 -6.26 10.54 -11.86 -0.13 -6.39 16 4 C 0.04 0.47 9.77 -19.19 -0.19 0.28 16 5 C -0.20 -2.43 5.51 -35.92 -0.20 -2.63 16 6 C 0.13 1.51 5.50 -4.97 -0.03 1.48 16 7 N -0.54 -7.83 4.70 -235.91 -1.11 -8.94 16 8 C 0.06 0.90 5.37 -3.77 -0.02 0.88 16 9 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 10 N -0.54 -11.77 4.70 -235.92 -1.11 -12.88 16 11 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 12 C -0.51 -14.32 8.47 -34.44 -0.29 -14.62 16 13 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 21 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 22 S 0.14 1.45 23.18 -107.50 -2.49 -1.04 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 27 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.09 6.15 -51.93 -0.32 0.78 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.86 6.79 -51.93 -0.35 1.51 16 33 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 34 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 38 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -31.49 328.43 -10.88 -42.37 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -6.08 Total: -3.97 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -0.63 Total: -4.70 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -1.61 Total: -54.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.49 Total: -1.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.49 -10.88 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105902382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.268 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds