Wall clock time and date at job start Tue Mar 31 2020 07:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47098 * 2 1 4 4 O 1.42900 * 109.47165 * 119.99930 * 2 1 3 5 5 C 1.42896 * 114.00032 * 149.99552 * 4 2 1 6 6 C 1.50702 * 109.47471 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99578 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00755 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46897 * 89.99800 * 14 12 10 16 16 H 1.48496 * 109.47501 * 210.00050 * 14 12 10 17 17 H 1.48501 * 109.46824 * 330.00136 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.09007 * 109.47081 * 299.99942 * 1 2 3 25 25 H 1.08998 * 109.47072 * 60.00188 * 1 2 3 26 26 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47093 * 239.99599 * 2 1 3 28 28 H 1.09004 * 109.47247 * 300.00217 * 3 2 1 29 29 H 1.09002 * 109.47561 * 60.00214 * 3 2 1 30 30 H 1.09004 * 109.47262 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47223 * 60.00544 * 5 4 2 32 32 H 1.09002 * 109.47547 * 300.00188 * 5 4 2 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9886 6 6 3.6693 -1.9989 2.2745 7 8 2.9487 -1.9293 3.2477 8 7 4.8306 -2.6793 2.3433 9 6 5.2230 -3.3344 3.5935 10 6 6.0269 -2.3749 4.4326 11 1 6.2261 -1.3770 4.0706 12 6 6.5083 -2.7709 5.6624 13 7 6.2653 -3.9859 6.1034 14 14 7.5054 -1.5818 6.7023 15 1 6.5931 -0.8111 7.5848 16 1 8.4729 -2.3422 7.5334 17 1 8.2427 -0.6467 5.8150 18 6 5.7013 -2.7628 1.1680 19 6 6.6690 -1.6076 1.1766 20 6 7.8855 -1.6047 1.7506 21 6 8.4450 -0.3273 1.5180 22 6 7.5374 0.3737 0.8153 23 8 6.4654 -0.4083 0.6073 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 4.0200 -0.5874 0.7125 32 1 3.1808 -2.0708 0.1986 33 1 4.3302 -3.6361 4.1413 34 1 5.8261 -4.2141 3.3690 35 1 6.6037 -4.2643 6.9689 36 1 6.2554 -3.7012 1.1922 37 1 5.0950 -2.7222 0.2630 38 1 8.3467 -2.4217 2.2856 39 1 9.4153 0.0191 1.8424 40 1 7.6525 1.3916 0.4730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122204853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:01 Heat of formation + Delta-G solvation = -64.770156 kcal Electronic energy + Delta-G solvation = -22846.396571 eV Core-core repulsion = 19435.513534 eV Total energy + Delta-G solvation = -3410.883038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14060 -39.25004 -37.73791 -35.17248 -32.84802 -32.57750 -32.48849 -30.03730 -28.58422 -27.26916 -26.44804 -25.17185 -22.63200 -21.35503 -21.23762 -20.35203 -18.70945 -17.21967 -16.87689 -16.68682 -16.17018 -15.59602 -15.37643 -15.10907 -14.54217 -14.39120 -14.11062 -13.54867 -13.18210 -12.69929 -12.57999 -12.45415 -12.40960 -12.25686 -12.21364 -12.07087 -11.78151 -11.49435 -11.38511 -11.21570 -10.90476 -10.68951 -10.60069 -10.18865 -9.68439 -9.51015 -9.39852 -8.88713 -8.41436 -8.14047 -7.76678 -6.01994 -4.04486 2.07170 3.01444 3.23846 3.33069 3.39483 3.39800 3.45062 3.49872 4.27835 4.49146 4.84293 4.98751 5.02256 5.10320 5.15600 5.21674 5.33370 5.35677 5.44370 5.52571 5.56409 5.64020 5.68029 5.77177 5.78051 5.81586 6.14550 6.20650 6.21446 6.42473 6.47493 6.90704 6.95429 7.29808 7.39227 7.48120 7.56542 7.95387 8.24297 8.27917 8.91965 9.05903 9.59889 11.06562 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.006061 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.598792 B = 4618.354323 C = 5581.183822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.356 6.356 5 C 0.042 3.958 6 C 0.510 3.490 7 O -0.512 6.512 8 N -0.595 5.595 9 C 0.246 3.754 10 C -0.516 4.516 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.195 3.805 19 C -0.032 4.032 20 C -0.167 4.167 21 C -0.212 4.212 22 C -0.054 4.054 23 O -0.182 6.182 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 6.309 -16.756 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.233 4.233 4 O -0.274 6.274 5 C -0.038 4.038 6 C 0.296 3.704 7 O -0.386 6.386 8 N -0.329 5.329 9 C 0.128 3.872 10 C -0.555 4.555 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.070 3.930 19 C -0.083 4.083 20 C -0.187 4.187 21 C -0.232 4.232 22 C -0.121 4.121 23 O -0.079 6.079 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.173 6.272 -16.025 17.345 hybrid contribution 1.243 0.865 0.611 1.633 sum -0.930 7.137 -15.413 17.011 Atomic orbital electron populations 1.21841 0.93608 1.02755 1.02336 1.22114 0.95087 0.92541 0.88251 1.22306 1.01762 0.96869 1.02376 1.88076 1.35097 1.69614 1.34655 1.22436 0.87603 0.96822 0.96942 1.19996 0.81864 0.79477 0.89063 1.90703 1.51941 1.58454 1.37545 1.48316 1.18053 1.52724 1.13811 1.19386 0.96614 0.92322 0.78914 1.21402 1.32495 0.99388 1.02227 0.92299 1.24883 0.96491 0.95207 0.97370 1.69929 1.46125 1.17537 1.20009 0.86571 0.79892 0.81075 0.80407 1.20660 1.21241 1.19843 1.19845 0.90732 0.92991 0.89399 1.22981 0.97589 0.86524 1.01211 1.21613 0.95428 0.98994 1.02680 1.21820 1.01641 0.95377 1.04314 1.23826 0.86403 0.96996 1.04924 1.83933 1.39832 1.22371 1.61777 0.91648 0.91462 0.91950 0.92378 0.91877 0.91668 0.92355 0.90433 0.91212 0.93543 0.94691 0.92815 0.87154 0.90252 0.83152 0.84050 0.78835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.56 37.16 0.36 -1.23 16 2 C 0.08 0.97 3.34 -26.73 -0.09 0.88 16 3 C -0.18 -1.98 9.53 37.15 0.35 -1.63 16 4 O -0.36 -6.24 9.52 -55.14 -0.52 -6.76 16 5 C 0.04 0.70 4.78 36.01 0.17 0.87 16 6 C 0.51 11.19 7.75 -10.99 -0.09 11.10 16 7 O -0.51 -13.82 16.08 -14.36 -0.23 -14.05 16 8 N -0.60 -12.50 2.44 -176.43 -0.43 -12.93 16 9 C 0.25 6.29 5.20 -5.20 -0.03 6.26 16 10 C -0.52 -14.43 9.13 -34.44 -0.31 -14.74 16 11 H 0.06 1.70 7.64 -52.49 -0.40 1.30 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 14 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.20 3.09 5.78 -5.19 -0.03 3.06 16 19 C -0.03 -0.55 6.85 -35.62 -0.24 -0.79 16 20 C -0.17 -2.94 10.39 -39.70 -0.41 -3.35 16 21 C -0.21 -3.31 10.91 -39.71 -0.43 -3.74 16 22 C -0.05 -0.76 12.09 29.41 0.36 -0.41 16 23 O -0.18 -2.92 9.56 5.68 0.05 -2.86 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.08 1.23 6.66 -51.93 -0.35 0.88 16 32 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 33 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 37 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 38 H 0.15 2.71 8.06 -52.49 -0.42 2.28 16 39 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.19 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -34.87 342.66 -6.75 -41.62 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.00 Total: 0.42 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.50 Total: -2.03 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.31 Total: -38.64 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.70 Total: -23.68 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.87 -6.75 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122204853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.155 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds