Wall clock time and date at job start Tue Mar 31 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00362 * 2 1 4 4 C 1.52998 * 109.47304 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46706 * 65.00212 * 4 3 2 6 6 C 1.46501 * 119.99675 * 274.57816 * 5 4 3 7 7 C 1.50698 * 109.47121 * 263.40806 * 6 5 4 8 8 H 1.08001 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00175 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99779 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00280 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47229 * 59.99535 * 11 9 7 13 13 H 1.48495 * 109.47011 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46901 * 299.99757 * 11 9 7 15 15 C 1.34778 * 120.00048 * 94.58397 * 5 4 3 16 16 O 1.21691 * 120.00189 * 4.22264 * 15 5 4 17 17 C 1.46658 * 119.99704 * 184.22808 * 15 5 4 18 18 C 1.36552 * 125.98538 * 173.89297 * 17 15 5 19 19 C 1.40364 * 106.70764 * 180.02562 * 18 17 15 20 20 C 1.50696 * 126.44236 * 180.02562 * 19 18 17 21 21 C 1.35131 * 107.11368 * 0.02562 * 19 18 17 22 22 C 1.50700 * 125.61283 * 180.02562 * 21 19 18 23 23 O 1.33930 * 108.76767 * 359.97438 * 21 19 18 24 24 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47285 * 299.99902 * 1 2 3 26 26 H 1.08998 * 109.47236 * 59.99805 * 1 2 3 27 27 H 1.09002 * 109.46599 * 59.99941 * 3 2 1 28 28 H 1.08995 * 109.46870 * 300.00170 * 3 2 1 29 29 H 1.09000 * 109.47021 * 305.00266 * 4 3 2 30 30 H 1.08999 * 109.47115 * 184.99682 * 4 3 2 31 31 H 1.08994 * 109.47266 * 23.41087 * 6 5 4 32 32 H 1.09006 * 109.47053 * 143.41449 * 6 5 4 33 33 H 0.97001 * 120.00058 * 180.02562 * 10 9 7 34 34 H 1.07994 * 126.64205 * 359.75790 * 18 17 15 35 35 H 1.08992 * 109.47235 * 90.01851 * 20 19 18 36 36 H 1.08997 * 109.47067 * 210.02399 * 20 19 18 37 37 H 1.09007 * 109.46579 * 330.02053 * 20 19 18 38 38 H 1.09005 * 109.46760 * 179.97438 * 22 21 19 39 39 H 1.08993 * 109.47543 * 299.96816 * 22 21 19 40 40 H 1.09000 * 109.46968 * 59.97443 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0100 -0.8957 -1.3727 7 6 5.4058 -1.3911 -1.0944 8 1 6.1896 -0.6889 -0.8516 9 6 5.6824 -2.7407 -1.1508 10 7 4.7280 -3.5956 -1.4469 11 14 7.4124 -3.3548 -0.8051 12 1 7.8106 -2.9642 0.5712 13 1 7.4463 -4.8343 -0.9286 14 1 8.3554 -2.7542 -1.7826 15 6 4.3517 1.3356 -2.2903 16 8 4.3976 2.5452 -2.1646 17 6 4.7044 0.7177 -3.5727 18 6 4.9858 1.3811 -4.7325 19 6 5.2668 0.4027 -5.6990 20 6 5.6345 0.6474 -7.1398 21 6 5.1455 -0.7997 -5.0946 22 6 5.3577 -2.1384 -5.7533 23 8 4.8067 -0.6058 -3.8134 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 3.8507 0.5684 0.8427 30 1 3.9785 2.1764 0.0902 31 1 3.3183 -1.3361 -0.6547 32 1 3.7173 -1.1829 -2.3826 33 1 4.9225 -4.5451 -1.4862 34 1 4.9872 2.4510 -4.8790 35 1 6.7172 0.7359 -7.2285 36 1 5.2868 -0.1861 -7.7501 37 1 5.1653 1.5695 -7.4829 38 1 5.1922 -2.9322 -5.0247 39 1 4.6563 -2.2520 -6.5798 40 1 6.3781 -2.1995 -6.1317 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127477906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:07 Heat of formation + Delta-G solvation = -67.493586 kcal Electronic energy + Delta-G solvation = -23133.341605 eV Core-core repulsion = 19722.340470 eV Total energy + Delta-G solvation = -3411.001135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.02392 -38.94114 -37.36044 -35.03898 -33.76643 -32.54871 -31.45117 -29.90281 -28.27464 -27.00484 -26.29096 -25.42392 -22.97300 -22.72694 -20.90762 -20.05669 -18.45771 -16.83439 -16.40776 -16.05742 -15.77267 -15.62729 -15.12217 -14.92832 -14.54543 -14.34158 -13.76721 -13.26908 -13.11107 -12.86547 -12.51616 -12.47867 -12.38583 -12.19425 -11.97791 -11.91202 -11.72583 -11.51203 -11.29652 -10.97794 -10.91450 -10.83647 -10.40398 -10.07733 -9.69807 -9.48857 -9.29522 -9.08258 -8.40052 -7.90839 -7.57825 -6.03563 -4.07796 1.80808 2.82962 3.30375 3.34082 3.37272 3.41979 3.91479 3.96789 4.17513 4.44591 5.15368 5.26041 5.29619 5.31182 5.38369 5.48950 5.59819 5.64580 5.67301 5.68701 5.75181 5.79368 5.87704 5.89291 5.99418 6.07128 6.11949 6.28901 6.33453 6.41418 6.59428 6.84112 7.02531 7.47281 7.50664 7.58331 7.76138 7.92672 8.21727 8.29436 8.82706 8.99045 9.55933 11.03679 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.008524 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.765676 B = 3284.207159 C = 4874.413162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.578 5.578 6 C 0.236 3.764 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.596 3.404 16 O -0.564 6.564 17 C -0.052 4.052 18 C -0.143 4.143 19 C -0.212 4.212 20 C -0.073 4.073 21 C 0.010 3.990 22 C -0.076 4.076 23 O -0.101 6.101 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.262 0.738 34 H 0.148 0.852 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 5.025 -5.270 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.306 5.306 6 C 0.117 3.883 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.133 4.133 10 N -0.528 5.528 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.384 3.616 16 O -0.447 6.447 17 C -0.105 4.105 18 C -0.164 4.164 19 C -0.213 4.213 20 C -0.130 4.130 21 C -0.044 4.044 22 C -0.133 4.133 23 O 0.007 5.993 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.166 0.834 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.049 4.993 -4.949 8.113 hybrid contribution 0.796 -0.149 0.165 0.827 sum -3.253 4.844 -4.784 7.545 Atomic orbital electron populations 1.22684 0.82109 1.02472 0.99139 1.88075 1.18731 1.27258 1.95192 1.23021 0.95029 0.85105 0.99842 1.21431 0.91281 0.99933 0.87827 1.48173 1.61138 1.10186 1.11097 1.19741 0.97692 0.71658 0.99209 1.21381 0.94941 0.92216 1.47965 0.92720 1.24810 0.96855 0.96538 0.95098 1.69934 1.31973 1.02412 1.48456 0.86703 0.85078 0.77549 0.78982 1.20265 1.21183 1.20292 1.16736 0.77350 0.85502 0.81980 1.90737 1.57470 1.13361 1.83145 1.21903 1.10828 0.81418 0.96360 1.21566 1.03477 1.00094 0.91240 1.20025 1.11428 0.92095 0.97779 1.20062 1.00833 1.01611 0.90505 1.22669 1.01336 0.96988 0.83440 1.20302 1.02227 0.90997 0.99740 1.84765 1.64640 1.24288 1.25640 0.89805 0.94709 0.94640 0.92941 0.93444 0.89304 0.88888 0.92822 0.93268 0.92818 0.83383 0.92034 0.92057 0.92030 0.89568 0.90214 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.83 9.22 -35.23 -0.32 -7.16 16 3 C 0.05 0.79 6.28 37.16 0.23 1.02 16 4 C 0.12 2.25 5.91 -4.04 -0.02 2.22 16 5 N -0.58 -13.09 2.46 -176.61 -0.43 -13.52 16 6 C 0.24 6.00 4.51 -5.19 -0.02 5.98 16 7 C -0.53 -14.38 8.47 -34.44 -0.29 -14.67 16 8 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 10 N -0.89 -24.94 13.29 55.43 0.74 -24.21 16 11 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.60 13.74 7.58 -12.86 -0.10 13.64 16 16 O -0.56 -13.25 16.36 5.20 0.09 -13.17 16 17 C -0.05 -1.16 6.75 -36.79 -0.25 -1.41 16 18 C -0.14 -2.76 10.58 -39.39 -0.42 -3.18 16 19 C -0.21 -3.67 6.14 -104.93 -0.64 -4.32 16 20 C -0.07 -0.93 10.17 36.00 0.37 -0.56 16 21 C 0.01 0.18 7.31 -35.41 -0.26 -0.07 16 22 C -0.08 -1.15 9.92 36.01 0.36 -0.79 16 23 O -0.10 -2.31 6.62 5.02 0.03 -2.28 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.67 8.11 -51.93 -0.42 1.25 16 30 H 0.09 1.66 7.24 -51.93 -0.38 1.28 16 31 H 0.05 1.45 6.85 -51.93 -0.36 1.10 16 32 H 0.05 1.34 5.37 -51.93 -0.28 1.06 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -31.61 339.93 -5.87 -37.48 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.04 Total: 0.26 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.03 Total: 1.23 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.30 Total: -37.73 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.21 Total: -22.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.61 -5.87 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127477906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.010 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds