Wall clock time and date at job start Tue Mar 31 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32121 * 122.71173 * 2 1 4 4 C 1.29684 * 116.86860 * 180.34544 * 3 2 1 5 5 N 1.38604 * 124.94954 * 179.72298 * 4 3 2 6 6 C 1.46957 * 111.00058 * 123.80164 * 5 4 3 7 7 C 1.53053 * 109.36641 * 176.81139 * 6 5 4 8 8 N 1.46960 * 109.36583 * 58.39534 * 7 6 5 9 9 C 1.46898 * 111.00223 * 176.81053 * 8 7 6 10 10 C 1.50699 * 109.46967 * 58.98370 * 9 8 7 11 11 H 1.08001 * 119.99956 * 5.00668 * 10 9 8 12 12 C 1.37877 * 120.00474 * 185.00841 * 10 9 8 13 13 N 1.31516 * 119.99666 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00378 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46926 * 60.00476 * 14 12 10 16 16 H 1.48498 * 109.47064 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47483 * 300.00297 * 14 12 10 18 18 C 1.46957 * 110.88349 * 300.68468 * 8 7 6 19 19 C 1.46961 * 111.00392 * 359.97438 * 5 4 3 20 20 S 1.70963 * 110.09931 * 359.72088 * 4 3 2 21 21 C 1.33327 * 122.71067 * 179.82184 * 2 1 3 22 22 C 1.50700 * 125.95229 * 359.95555 * 21 2 1 23 23 H 1.08998 * 109.47215 * 270.17732 * 1 2 3 24 24 H 1.09002 * 109.47219 * 30.18032 * 1 2 3 25 25 H 1.09007 * 109.46927 * 150.17905 * 1 2 3 26 26 H 1.09001 * 109.48934 * 296.77527 * 6 5 4 27 27 H 1.08991 * 109.49189 * 56.84452 * 6 5 4 28 28 H 1.09000 * 109.49071 * 298.43477 * 7 6 5 29 29 H 1.08995 * 109.49483 * 178.36928 * 7 6 5 30 30 H 1.09003 * 109.46909 * 178.98268 * 9 8 7 31 31 H 1.09003 * 109.47584 * 298.98628 * 9 8 7 32 32 H 0.96992 * 120.00290 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.48523 * 299.35000 * 18 8 7 34 34 H 1.09001 * 109.48709 * 179.28011 * 18 8 7 35 35 H 1.09004 * 109.48496 * 303.16230 * 19 5 4 36 36 H 1.09003 * 109.48351 * 63.19828 * 19 5 4 37 37 H 1.09002 * 109.47080 * 179.71943 * 22 21 2 38 38 H 1.09005 * 109.46927 * 59.72395 * 22 21 2 39 39 H 1.09000 * 109.47406 * 299.72168 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2210 1.1117 0.0000 4 6 3.5111 0.9797 -0.0070 5 7 4.4166 2.0290 -0.0136 6 6 5.3448 1.9309 1.1214 7 6 6.3750 3.0594 1.0336 8 7 5.6804 4.3545 1.0354 9 6 6.6401 5.4666 1.0284 10 6 7.5158 5.3667 -0.1939 11 1 7.3222 4.6065 -0.9362 12 6 8.5642 6.2457 -0.3647 13 7 8.7997 7.1717 0.5390 14 14 9.6502 6.1213 -1.8795 15 1 8.8228 6.3088 -3.0983 16 1 10.6969 7.1733 -1.8258 17 1 10.2936 4.7836 -1.9189 18 6 4.7521 4.4526 -0.0996 19 6 3.7220 3.3241 -0.0124 20 16 3.9321 -0.6773 -0.0067 21 6 2.2275 -1.1218 0.0035 22 6 1.6792 -2.5255 0.0088 23 1 -0.3633 0.0032 1.0276 24 1 -0.3634 0.8884 -0.5166 25 1 -0.3633 -0.8917 -0.5111 26 1 4.7885 2.0181 2.0547 27 1 5.8560 0.9688 1.0910 28 1 6.9497 2.9564 0.1132 29 1 7.0469 3.0059 1.8902 30 1 6.0994 6.4130 1.0116 31 1 7.2595 5.4178 1.9240 32 1 9.5374 7.7899 0.4191 33 1 5.3085 4.3654 -1.0329 34 1 4.2409 5.4148 -0.0691 35 1 3.0503 3.3773 -0.8692 36 1 3.1467 3.4272 0.9076 37 1 2.5042 -3.2379 0.0057 38 1 1.0638 -2.6785 -0.8778 39 1 1.0729 -2.6755 0.9022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128839236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:22 Heat of formation + Delta-G solvation = 53.001096 kcal Electronic energy + Delta-G solvation = -19885.660028 eV Core-core repulsion = 16954.929557 eV Total energy + Delta-G solvation = -2930.730471 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24582 -38.57927 -35.47677 -32.85812 -32.07224 -30.57992 -29.76610 -28.07596 -25.52042 -24.95774 -23.32825 -22.92804 -21.60477 -19.51454 -18.52349 -18.08399 -16.59182 -16.23065 -15.39434 -14.90506 -14.52206 -14.30150 -14.24707 -14.03193 -13.57574 -13.22824 -13.07293 -13.03263 -12.88952 -12.41443 -12.26730 -12.06413 -11.91911 -11.13299 -11.08718 -10.95121 -10.83151 -10.66348 -10.53394 -10.21634 -9.93348 -9.67180 -9.60623 -9.45783 -9.11061 -8.45330 -7.87558 -7.26421 -6.05264 -4.14560 0.80469 1.21620 1.77739 2.78115 3.28232 3.33164 3.36008 3.70268 4.39266 4.49327 4.87499 4.92814 4.95530 5.20201 5.25014 5.28220 5.36260 5.42315 5.49112 5.55403 5.60136 5.68758 5.70214 5.79060 5.92020 5.98204 6.14798 6.22810 6.50386 6.64492 6.73394 6.79177 7.03773 7.21467 7.48673 7.86338 7.87468 7.96820 8.18600 8.25014 8.95202 9.52642 11.00030 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.003787 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.094225 B = 7390.995661 C = 7661.990991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.086 3.914 3 N -0.518 5.518 4 C 0.241 3.759 5 N -0.447 5.447 6 C 0.060 3.940 7 C 0.065 3.935 8 N -0.544 5.544 9 C 0.188 3.812 10 C -0.552 4.552 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.060 3.940 19 C 0.075 3.925 20 S 0.122 5.878 21 C -0.264 4.264 22 C -0.063 4.063 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 -17.194 0.150 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 N -0.240 5.240 4 C -0.128 4.128 5 N -0.168 5.168 6 C -0.067 4.067 7 C -0.064 4.064 8 N -0.268 5.268 9 C 0.063 3.937 10 C -0.591 4.591 11 H 0.076 0.924 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.717 3.283 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.069 4.069 19 C -0.054 4.054 20 S 0.376 5.624 21 C -0.386 4.386 22 C -0.123 4.123 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.407 -16.982 0.217 21.033 hybrid contribution 0.036 0.182 -1.137 1.152 sum -12.372 -16.800 -0.920 20.884 Atomic orbital electron populations 1.20320 0.87509 1.03012 1.02646 1.19892 0.97687 0.86269 1.00759 1.66724 1.03476 1.31563 1.22205 1.25046 0.91096 0.96472 1.00232 1.59242 1.14915 1.01588 1.41033 1.22600 0.93904 1.00519 0.89655 1.21948 0.93924 0.88188 1.02354 1.62730 1.20140 1.03328 1.40614 1.19740 0.89274 0.88018 0.96708 1.21715 1.13946 1.16197 1.07254 0.92375 1.24954 0.97301 0.95114 0.96310 1.69929 1.30339 1.18221 1.34431 0.86695 0.80285 0.77764 0.83525 1.20238 1.21209 1.20219 1.22046 0.93854 0.96352 0.94691 1.22253 0.95765 0.85183 1.02208 1.83805 1.06709 1.00285 1.71602 1.25317 0.94670 1.00644 1.17924 1.20080 1.00490 0.89235 1.02457 0.90831 0.90762 0.90965 0.92772 0.90435 0.92699 0.90237 0.95261 0.94578 0.92712 0.93231 0.90472 0.90031 0.92631 0.91641 0.90921 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.05 36.00 0.36 -0.35 16 2 C 0.09 1.13 6.74 -84.18 -0.57 0.56 16 3 N -0.52 -8.18 9.49 -11.37 -0.11 -8.29 16 4 C 0.24 3.80 6.73 -87.69 -0.59 3.21 16 5 N -0.45 -7.54 4.78 -175.22 -0.84 -8.38 16 6 C 0.06 0.97 5.46 -3.77 -0.02 0.95 16 7 C 0.06 1.24 5.24 -3.76 -0.02 1.22 16 8 N -0.54 -11.52 4.92 -235.91 -1.16 -12.68 16 9 C 0.19 4.75 5.14 -4.98 -0.03 4.73 16 10 C -0.55 -14.94 7.66 -34.44 -0.26 -15.20 16 11 H 0.06 1.57 5.82 -52.49 -0.31 1.27 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.06 1.17 5.32 -3.77 -0.02 1.15 16 19 C 0.07 1.29 4.94 -3.77 -0.02 1.27 16 20 S 0.12 1.57 22.33 -107.50 -2.40 -0.83 16 21 C -0.26 -3.08 6.57 -36.02 -0.24 -3.32 16 22 C -0.06 -0.50 9.55 36.01 0.34 -0.15 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.52 7.43 -51.93 -0.39 0.14 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.09 7.44 -51.93 -0.39 0.71 16 28 H 0.05 1.16 6.62 -51.93 -0.34 0.81 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 1.07 6.78 -51.93 -0.35 0.71 16 34 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 35 H 0.08 1.37 7.98 -51.93 -0.41 0.96 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 324.22 15.07 4.89 4.89 Total: -1.00 -29.87 324.22 -11.02 -40.89 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.96 Total: -2.50 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.15 Total: -4.21 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.37 Total: -54.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.40 Total: -0.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.87 -11.02 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128839236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.887 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds