Wall clock time and date at job start Tue Mar 31 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47318 * 2 1 4 4 N 1.30172 * 126.80292 * 270.02384 * 3 2 1 5 5 O 1.20924 * 111.60656 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.56319 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.77182 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47444 * 269.96154 * 7 6 5 9 9 C 1.35447 * 106.44898 * 0.02562 * 6 5 4 10 10 C 1.50701 * 128.00779 * 180.26015 * 9 6 5 11 11 C 1.50699 * 109.47112 * 269.67457 * 10 9 6 12 12 O 1.20828 * 120.00111 * 359.97438 * 11 10 9 13 13 O 1.34223 * 119.99977 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99963 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47090 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00045 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00381 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99621 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47270 * 90.00266 * 20 18 16 22 22 H 1.48501 * 109.47241 * 210.00134 * 20 18 16 23 23 H 1.48501 * 109.47309 * 330.00118 * 20 18 16 24 24 H 1.09006 * 109.47281 * 59.99512 * 1 2 3 25 25 H 1.08995 * 109.47528 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46927 * 300.00106 * 1 2 3 27 27 H 1.08997 * 109.47196 * 239.99952 * 2 1 3 28 28 H 1.09002 * 109.47603 * 119.99799 * 2 1 3 29 29 H 1.08998 * 109.47545 * 29.96462 * 7 6 5 30 30 H 1.09001 * 109.47073 * 149.96550 * 7 6 5 31 31 H 1.09001 * 109.46661 * 60.00144 * 8 7 6 32 32 H 1.08995 * 109.47374 * 180.02562 * 8 7 6 33 33 H 1.09007 * 109.46764 * 300.00552 * 8 7 6 34 34 H 1.08997 * 109.47073 * 29.67351 * 10 9 6 35 35 H 1.09002 * 109.47300 * 149.67174 * 10 9 6 36 36 H 1.08993 * 109.47387 * 299.99788 * 14 13 11 37 37 H 1.08999 * 109.46830 * 60.00174 * 14 13 11 38 38 H 1.08993 * 109.47242 * 300.00327 * 15 14 13 39 39 H 1.08999 * 109.46816 * 60.00616 * 15 14 13 40 40 H 0.97001 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7297 3.3968 0.6069 7 6 3.1620 4.6225 1.3696 8 6 4.6685 4.5570 1.6289 9 6 2.3142 2.2195 1.1321 10 6 2.1774 1.8490 2.5864 11 6 3.4699 1.2477 3.0754 12 8 4.4059 1.1316 2.3202 13 8 3.5809 0.8404 4.3495 14 6 4.8547 0.2705 4.7507 15 6 4.7915 -0.1320 6.2255 16 6 6.1133 -0.7241 6.6418 17 1 6.9182 -0.8048 5.9261 18 6 6.2952 -1.1627 7.9362 19 7 7.4489 -1.6789 8.2996 20 14 4.9029 -1.0238 9.1737 21 1 4.0803 -2.2595 9.1342 22 1 5.4672 -0.8481 10.5360 23 1 4.0543 0.1468 8.8347 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.9323 5.5137 0.7856 30 1 2.6312 4.6646 2.3207 31 1 5.1993 4.5149 0.6778 32 1 4.9810 5.4433 2.1810 33 1 4.8981 3.6657 2.2130 34 1 1.9487 2.7415 3.1688 35 1 1.3723 1.1233 2.7024 36 1 5.0671 -0.6088 4.1426 37 1 5.6438 1.0091 4.6096 38 1 4.5793 0.7474 6.8333 39 1 4.0024 -0.8705 6.3670 40 1 7.5767 -1.9878 9.2101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176821603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:52 Heat of formation + Delta-G solvation = -55.245246 kcal Electronic energy + Delta-G solvation = -22003.040929 eV Core-core repulsion = 18592.570922 eV Total energy + Delta-G solvation = -3410.470007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.04750 -40.09598 -36.66556 -35.72607 -35.07020 -33.35781 -32.18803 -31.04504 -30.64353 -28.88077 -25.30360 -24.80481 -23.88605 -22.40992 -20.80672 -20.51583 -19.85360 -17.86488 -17.40611 -17.15264 -16.59921 -16.28901 -15.76141 -15.26463 -14.82772 -14.38299 -14.25135 -13.91117 -13.73180 -13.31206 -13.07274 -13.00590 -12.74438 -12.49342 -12.44460 -11.98677 -11.70990 -11.57743 -11.52813 -11.35883 -11.30572 -10.90276 -10.73151 -10.62174 -10.16769 -9.99247 -9.89282 -9.75024 -9.39406 -9.30487 -8.65688 -6.16029 -4.17595 1.30877 1.99851 2.43202 2.91178 3.19746 3.25065 3.32733 3.36261 3.97159 4.19767 4.35377 4.50461 4.61155 4.81425 4.93704 4.95294 5.01286 5.09101 5.15364 5.17443 5.18580 5.27540 5.44352 5.55430 5.62473 5.63397 5.75306 5.79802 5.85244 5.91779 5.92448 6.00851 6.09428 6.40424 6.74077 7.14485 7.17564 7.58811 8.07412 8.17085 8.36235 8.85498 9.43316 10.96542 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.003667 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.263148 B = 7633.677189 C = 8254.925174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.041 3.959 4 N -0.367 5.367 5 O 0.097 5.903 6 C -0.009 4.009 7 C -0.044 4.044 8 C -0.153 4.153 9 C -0.188 4.188 10 C -0.037 4.037 11 C 0.454 3.546 12 O -0.504 6.504 13 O -0.361 6.361 14 C 0.083 3.917 15 C -0.009 4.009 16 C -0.529 4.529 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 10.933 -13.909 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.118 4.118 4 N -0.072 5.072 5 O 0.034 5.966 6 C -0.073 4.073 7 C -0.082 4.082 8 C -0.211 4.211 9 C -0.192 4.192 10 C -0.075 4.075 11 C 0.296 3.704 12 O -0.392 6.392 13 O -0.278 6.278 14 C 0.011 3.989 15 C -0.046 4.046 16 C -0.567 4.567 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.708 3.292 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.188 1.188 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.565 10.606 -15.281 23.625 hybrid contribution -0.378 -0.215 1.445 1.510 sum -14.944 10.391 -13.836 22.863 Atomic orbital electron populations 1.21726 0.93796 1.02448 1.02352 1.19968 0.96345 0.88265 1.04173 1.23327 1.01337 0.98897 0.88246 1.73804 1.16839 0.92761 1.23791 1.84793 1.62682 1.26860 1.22284 1.24246 1.00463 0.98744 0.83840 1.20172 0.97988 0.91594 0.98428 1.21802 0.93228 1.03233 1.02793 1.20203 1.09260 0.93939 0.95772 1.19475 0.94844 1.03299 0.89837 1.23312 0.89821 0.76117 0.81120 1.90669 1.40434 1.51705 1.56360 1.86477 1.41602 1.71684 1.28009 1.23389 0.79995 0.97035 0.98492 1.19623 0.98663 0.97201 0.89146 1.20839 0.97233 1.41205 0.97386 0.90686 1.24937 0.95713 0.94210 0.98125 1.69894 1.23602 1.40990 1.18957 0.86749 0.82577 0.79310 0.80553 1.20042 1.21151 1.18752 0.92447 0.91480 0.92237 0.89902 0.89564 0.89279 0.88598 0.92032 0.91193 0.91479 0.86598 0.86540 0.91745 0.91704 0.95371 0.95817 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.15 0.37 -0.82 16 2 C -0.05 -0.52 6.44 -27.89 -0.18 -0.70 16 3 C 0.04 0.53 6.58 -82.10 -0.54 -0.01 16 4 N -0.37 -5.17 12.07 33.42 0.40 -4.77 16 5 O 0.10 1.27 11.20 17.16 0.19 1.46 16 6 C -0.01 -0.11 6.74 -35.31 -0.24 -0.34 16 7 C -0.04 -0.36 6.35 -27.88 -0.18 -0.54 16 8 C -0.15 -1.47 9.90 37.16 0.37 -1.10 16 9 C -0.19 -2.27 4.82 -104.42 -0.50 -2.77 16 10 C -0.04 -0.40 6.14 -29.03 -0.18 -0.57 16 11 C 0.45 7.07 7.95 36.01 0.29 7.36 16 12 O -0.50 -9.36 15.21 -18.75 -0.29 -9.65 16 13 O -0.36 -6.40 10.22 -39.24 -0.40 -6.80 16 14 C 0.08 1.73 5.40 37.16 0.20 1.93 16 15 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 16 C -0.53 -14.81 9.66 -34.44 -0.33 -15.15 16 17 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 20 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.62 7.44 -51.93 -0.39 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 34 H 0.12 0.94 7.44 -51.93 -0.39 0.55 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 37 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 38 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 39 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -32.88 343.71 -6.12 -39.01 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.17 Total: -3.40 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.15 Total: -11.08 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 1.18 Total: -31.07 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.49 Total: -14.98 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.88 -6.12 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176821603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.240 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds