Wall clock time and date at job start Tue Mar 31 2020 05:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30174 * 126.80490 * 2 1 4 4 O 1.20920 * 111.60455 * 179.69293 * 3 2 1 5 5 C 1.34038 * 111.56572 * 0.44904 * 4 3 2 6 6 C 1.50706 * 126.77824 * 179.82988 * 5 4 3 7 7 C 1.35451 * 106.44814 * 359.56788 * 5 4 3 8 8 C 1.50697 * 128.00785 * 180.24089 * 7 5 4 9 9 H 1.09003 * 109.47655 * 359.97438 * 8 7 5 10 10 C 1.53007 * 109.47088 * 119.99990 * 8 7 5 11 11 C 1.53004 * 109.47259 * 239.99827 * 8 7 5 12 12 C 1.50701 * 109.47183 * 175.00266 * 11 8 7 13 13 O 1.20825 * 119.99818 * 359.97438 * 12 11 8 14 14 O 1.34230 * 119.99977 * 180.02562 * 12 11 8 15 15 C 1.45197 * 117.00254 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47312 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47306 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99405 * 359.97438 * 17 16 15 19 19 C 1.37868 * 120.00050 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47112 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47193 * 120.00347 * 21 19 17 24 24 H 1.48508 * 109.47061 * 240.00412 * 21 19 17 25 25 H 1.09004 * 109.46771 * 270.04586 * 1 2 3 26 26 H 1.09000 * 109.46893 * 30.03930 * 1 2 3 27 27 H 1.08995 * 109.47344 * 150.03908 * 1 2 3 28 28 H 1.08999 * 109.47015 * 269.68862 * 6 5 4 29 29 H 1.09000 * 109.46646 * 29.68015 * 6 5 4 30 30 H 1.09000 * 109.47248 * 149.68732 * 6 5 4 31 31 H 1.08999 * 109.46886 * 180.02562 * 10 8 7 32 32 H 1.08999 * 109.46908 * 299.99350 * 10 8 7 33 33 H 1.08992 * 109.47160 * 59.99930 * 10 8 7 34 34 H 1.09001 * 109.46902 * 295.00164 * 11 8 7 35 35 H 1.08998 * 109.46604 * 55.00185 * 11 8 7 36 36 H 1.09007 * 109.46732 * 299.99821 * 15 14 12 37 37 H 1.09003 * 109.46754 * 59.99443 * 15 14 12 38 38 H 1.08997 * 109.47128 * 299.99636 * 16 15 14 39 39 H 1.08999 * 109.46957 * 59.99718 * 16 15 14 40 40 H 0.97005 * 120.00165 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7252 0.0060 5 6 3.6025 -0.6069 0.0012 6 6 4.9022 -1.3697 0.0025 7 6 2.3539 -1.1321 0.0008 8 6 1.9590 -2.5864 0.0011 9 1 2.8555 -3.2064 0.0013 10 6 1.1287 -2.8891 1.2501 11 6 1.1299 -2.8900 -1.2484 12 6 0.8389 -4.3673 -1.3115 13 8 1.2526 -5.1020 -0.4461 14 8 0.1209 -4.8671 -2.3296 15 6 -0.1202 -6.2989 -2.3259 16 6 -0.9493 -6.6797 -3.5540 17 6 -1.1989 -8.1659 -3.5505 18 1 -0.8052 -8.7777 -2.7523 19 6 -1.9299 -8.7445 -4.5662 20 7 -2.4090 -7.9996 -5.5384 21 14 -2.2400 -10.5866 -4.5614 22 1 -1.5997 -11.1933 -3.3667 23 1 -3.7023 -10.8424 -4.5223 24 1 -1.6649 -11.1886 -5.7912 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3634 -0.8903 -0.5132 28 1 5.2162 -1.5543 -1.0248 29 1 5.6657 -0.7857 0.5163 30 1 4.7647 -2.3209 0.5169 31 1 0.8434 -3.9411 1.2505 32 1 1.7194 -2.6729 2.1403 33 1 0.2322 -2.2692 1.2495 34 1 0.1919 -2.3365 -1.2054 35 1 1.6877 -2.5914 -2.1360 36 1 0.8326 -6.8278 -2.3520 37 1 -0.6635 -6.5735 -1.4217 38 1 -1.9020 -6.1509 -3.5274 39 1 -0.4063 -6.4050 -4.4583 40 1 -2.9236 -8.4067 -6.2528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178993725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:01 Heat of formation + Delta-G solvation = -55.336187 kcal Electronic energy + Delta-G solvation = -21656.781899 eV Core-core repulsion = 18246.307949 eV Total energy + Delta-G solvation = -3410.473950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.12597 -40.16613 -37.26410 -35.90345 -34.00377 -33.37734 -32.69435 -30.41031 -29.01718 -28.34015 -27.80229 -25.09634 -24.03144 -21.63125 -20.83054 -20.38131 -20.06405 -17.85373 -17.50896 -16.83614 -16.37526 -16.20482 -15.84111 -14.82106 -14.62189 -14.37308 -13.99447 -13.80356 -13.47243 -13.38556 -13.17782 -13.12391 -12.89657 -12.60894 -12.38577 -12.31626 -11.71236 -11.56919 -11.48608 -11.18242 -11.05739 -10.77629 -10.75962 -10.67879 -10.15697 -10.02011 -9.67351 -9.63303 -9.34434 -9.28986 -8.47274 -6.12932 -4.17424 1.24536 1.97879 2.52099 2.87259 3.16163 3.25640 3.33466 3.38442 3.97860 4.22701 4.36871 4.41438 4.65332 4.77833 4.87309 5.03812 5.09365 5.11629 5.22234 5.23794 5.31906 5.32714 5.40796 5.47720 5.54562 5.60999 5.75388 5.81052 5.90354 6.05576 6.05882 6.06605 6.24004 6.60833 6.98956 7.53492 7.59376 7.84140 8.09006 8.15610 8.23663 8.88454 9.47292 10.98577 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035051 B = 0.002837 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.640665 B = 9866.883406 C =10088.212818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.029 3.971 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.028 4.028 6 C -0.076 4.076 7 C -0.193 4.193 8 C 0.002 3.998 9 H 0.093 0.907 10 C -0.154 4.154 11 C -0.114 4.114 12 C 0.457 3.543 13 O -0.516 6.516 14 O -0.358 6.358 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 15.469 11.654 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.196 4.196 8 C -0.017 4.017 9 H 0.111 0.889 10 C -0.211 4.211 11 C -0.151 4.151 12 C 0.300 3.700 13 O -0.406 6.406 14 O -0.274 6.274 15 C 0.003 3.997 16 C -0.014 4.014 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.627 16.526 11.718 22.877 hybrid contribution -0.299 -1.801 -0.083 1.827 sum 10.328 14.725 11.635 21.422 Atomic orbital electron populations 1.20354 0.86037 1.04070 1.03558 1.23414 0.98896 0.88346 1.02360 1.73835 0.89284 1.23938 1.20439 1.84796 1.21663 1.22475 1.68020 1.24263 0.98206 0.83795 1.02904 1.20383 0.89957 0.98684 1.04325 1.20892 0.91633 0.97078 1.10040 1.19217 0.99600 0.88285 0.94607 0.88850 1.22004 0.99400 1.03755 0.95926 1.21491 1.03015 0.90337 1.00283 1.23407 0.75443 0.91478 0.79662 1.90595 1.49827 1.61295 1.38846 1.86530 1.65118 1.29952 1.45770 1.23639 1.00432 0.73280 1.02357 1.19176 0.94913 0.96463 0.90799 1.21014 1.34416 0.91905 1.09094 0.92211 1.24985 0.95388 0.98566 0.95236 1.69982 1.35608 1.35491 1.11739 0.86423 0.78042 0.84780 0.78113 1.19578 1.20821 1.20817 0.90005 0.90381 0.89586 0.89213 0.89825 0.88845 0.89862 0.92570 0.92624 0.87630 0.87748 0.92311 0.92301 0.95366 0.95381 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.11 36.01 0.33 -0.38 16 2 C 0.03 0.32 7.20 -82.10 -0.59 -0.28 16 3 N -0.37 -4.58 12.07 33.42 0.40 -4.17 16 4 O 0.09 1.07 11.20 17.18 0.19 1.26 16 5 C -0.03 -0.27 7.49 -35.30 -0.26 -0.53 16 6 C -0.08 -0.45 10.17 36.01 0.37 -0.08 16 7 C -0.19 -1.97 4.93 -104.42 -0.51 -2.49 16 8 C 0.00 0.02 2.33 -91.77 -0.21 -0.19 16 9 H 0.09 0.96 6.94 -51.93 -0.36 0.60 16 10 C -0.15 -1.62 8.84 37.16 0.33 -1.29 16 11 C -0.11 -1.30 5.14 -27.88 -0.14 -1.44 16 12 C 0.46 7.30 7.67 36.01 0.28 7.58 16 13 O -0.52 -9.16 13.72 -18.75 -0.26 -9.41 16 14 O -0.36 -6.86 10.22 -39.26 -0.40 -7.26 16 15 C 0.08 1.63 5.40 37.16 0.20 1.84 16 16 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 17 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.67 5.36 -51.93 -0.28 0.40 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.49 7.39 -51.93 -0.38 0.11 16 31 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.53 6.71 -51.93 -0.35 0.18 16 34 H 0.11 1.07 5.54 -51.93 -0.29 0.78 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -31.93 334.88 -5.82 -37.76 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -5.73 Total: -3.80 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.79 Total: -10.16 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 1.14 Total: -29.60 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.47 Total: -15.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.93 -5.82 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178993725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds