Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30176 * 126.79897 * 2 1 4 4 O 1.20926 * 111.60616 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.55984 * 359.76187 * 4 3 2 6 6 C 1.50700 * 126.77267 * 180.28442 * 5 4 3 7 7 C 1.35447 * 106.45016 * 0.38628 * 5 4 3 8 8 C 1.50693 * 128.00823 * 179.91657 * 7 5 4 9 9 H 1.09003 * 109.47165 * 5.46467 * 8 7 5 10 10 C 1.52997 * 109.46991 * 245.46787 * 8 7 5 11 11 C 1.53006 * 109.47595 * 125.46299 * 8 7 5 12 12 C 1.50692 * 109.47166 * 184.99640 * 11 8 7 13 13 O 1.20822 * 120.00425 * 0.02562 * 12 11 8 14 14 O 1.34231 * 119.99936 * 180.02562 * 12 11 8 15 15 C 1.45199 * 117.00061 * 180.02562 * 14 12 11 16 16 C 1.53009 * 109.46959 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.46673 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00349 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99518 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00226 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47078 * 59.99280 * 21 19 17 23 23 H 1.48501 * 109.46766 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46804 * 299.99613 * 21 19 17 25 25 H 1.09000 * 109.47206 * 274.89743 * 1 2 3 26 26 H 1.09011 * 109.46959 * 34.89697 * 1 2 3 27 27 H 1.09001 * 109.47097 * 154.89725 * 1 2 3 28 28 H 1.08998 * 109.47616 * 265.01807 * 6 5 4 29 29 H 1.09000 * 109.47499 * 25.01914 * 6 5 4 30 30 H 1.09005 * 109.47024 * 145.01206 * 6 5 4 31 31 H 1.09003 * 109.47288 * 174.22064 * 10 8 7 32 32 H 1.09007 * 109.47180 * 294.21551 * 10 8 7 33 33 H 1.08997 * 109.47313 * 54.21885 * 10 8 7 34 34 H 1.08997 * 109.46794 * 305.00174 * 11 8 7 35 35 H 1.09005 * 109.46492 * 64.99746 * 11 8 7 36 36 H 1.08992 * 109.47786 * 300.00082 * 15 14 12 37 37 H 1.09001 * 109.47345 * 60.00437 * 15 14 12 38 38 H 1.08993 * 109.46943 * 299.99841 * 16 15 14 39 39 H 1.08998 * 109.46729 * 60.00609 * 16 15 14 40 40 H 0.97003 * 120.00177 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7255 0.0005 5 6 3.6024 -0.6067 0.0061 6 6 4.9022 -1.3694 0.0144 7 6 2.3540 -1.1320 0.0005 8 6 1.9591 -2.5863 0.0015 9 1 2.8506 -3.2048 0.1056 10 6 1.2546 -2.9243 -1.3138 11 6 1.0114 -2.8567 1.1719 12 6 0.7138 -4.3321 1.2467 13 8 1.2092 -5.0897 0.4464 14 8 -0.1016 -4.8046 2.2025 15 6 -0.3429 -6.2364 2.2145 16 6 -1.2886 -6.5845 3.3659 17 6 -1.5385 -8.0707 3.3787 18 1 -1.0694 -8.7036 2.6399 19 6 -2.3660 -8.6223 4.3337 20 7 -2.9368 -7.8517 5.2336 21 14 -2.6753 -10.4645 4.3501 22 1 -1.3876 -11.1809 4.5339 23 1 -3.5932 -10.8023 5.4675 24 1 -3.2904 -10.8746 3.0623 25 1 -0.3633 0.0877 1.0239 26 1 -0.3633 0.8430 -0.5880 27 1 -0.3633 -0.9306 -0.4360 28 1 5.1747 -1.6341 -1.0072 29 1 5.6850 -0.7486 0.4500 30 1 4.7869 -2.2773 0.6066 31 1 1.0607 -3.9961 -1.3571 32 1 0.3108 -2.3818 -1.3704 33 1 1.8902 -2.6360 -2.1510 34 1 1.4802 -2.5330 2.1012 35 1 0.0828 -2.3058 1.0222 36 1 -0.7948 -6.5367 1.2693 37 1 0.6019 -6.7630 2.3491 38 1 -0.8362 -6.2844 4.3110 39 1 -2.2335 -6.0580 3.2317 40 1 -3.5187 -8.2398 5.9057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178993736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -56.173104 kcal Electronic energy + Delta-G solvation = -21659.507673 eV Core-core repulsion = 18248.997432 eV Total energy + Delta-G solvation = -3410.510242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.12198 -40.15781 -37.26187 -35.89925 -34.00065 -33.37352 -32.69670 -30.40827 -29.01358 -28.32477 -27.80799 -25.09292 -24.02978 -21.63857 -20.83056 -20.37076 -20.04845 -17.84724 -17.49893 -16.83364 -16.35914 -16.19562 -15.83877 -14.83382 -14.63073 -14.39743 -13.93645 -13.79037 -13.50009 -13.40655 -13.17890 -13.04607 -12.89950 -12.61879 -12.37053 -12.32423 -11.75018 -11.56993 -11.48864 -11.17802 -11.07645 -10.77761 -10.74331 -10.67915 -10.16418 -10.01508 -9.66857 -9.62449 -9.35270 -9.30978 -8.46354 -6.12452 -4.17141 1.24729 1.98537 2.52921 2.87578 3.16009 3.28345 3.32664 3.36376 3.98038 4.22921 4.36959 4.40945 4.66072 4.79104 4.90453 5.05549 5.08232 5.10178 5.24029 5.25217 5.30245 5.34841 5.42235 5.45483 5.53908 5.60505 5.73203 5.80591 5.88602 6.05339 6.06119 6.06889 6.24955 6.61023 6.99313 7.53325 7.59694 7.84296 8.09189 8.16002 8.23931 8.88269 9.47391 10.98981 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.035324 B = 0.002844 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.477389 B = 9842.756910 C =10112.999691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.029 3.971 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.029 4.029 6 C -0.075 4.075 7 C -0.192 4.192 8 C 0.002 3.998 9 H 0.093 0.907 10 C -0.153 4.153 11 C -0.114 4.114 12 C 0.457 3.543 13 O -0.516 6.516 14 O -0.358 6.358 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.942 15.147 -11.063 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.196 4.196 8 C -0.017 4.017 9 H 0.112 0.888 10 C -0.210 4.210 11 C -0.151 4.151 12 C 0.300 3.700 13 O -0.406 6.406 14 O -0.274 6.274 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.726 16.205 -11.115 22.883 hybrid contribution -0.297 -1.806 0.080 1.832 sum 11.429 14.399 -11.035 21.441 Atomic orbital electron populations 1.20362 0.86031 1.04007 1.03786 1.23418 0.98902 0.88337 1.02354 1.73832 0.89283 1.23947 1.20454 1.84802 1.21661 1.22471 1.68024 1.24250 0.98192 0.83794 1.02974 1.20371 0.89976 0.98717 1.04219 1.20889 0.91651 0.97079 1.10002 1.19218 0.99133 0.88314 0.95049 0.88838 1.22005 0.99918 1.03782 0.95279 1.21488 1.02226 0.90479 1.00931 1.23413 0.76239 0.91634 0.78714 1.90592 1.49916 1.59790 1.40309 1.86530 1.60160 1.30341 1.50336 1.23637 1.00574 0.73363 1.02141 1.19166 0.93762 0.96598 0.91743 1.20943 1.29216 0.91712 1.14738 0.92312 1.24983 0.95449 0.98485 0.95199 1.69960 1.30856 1.35402 1.16621 0.86532 0.78253 0.84799 0.77716 1.20057 1.21106 1.20051 0.89755 0.90449 0.89591 0.89310 0.89811 0.88839 0.89796 0.92652 0.92565 0.87791 0.87631 0.92301 0.92327 0.95392 0.95377 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.17 36.01 0.33 -0.40 16 2 C 0.03 0.32 7.23 -82.10 -0.59 -0.28 16 3 N -0.37 -4.58 12.07 33.42 0.40 -4.18 16 4 O 0.09 1.07 11.20 17.16 0.19 1.26 16 5 C -0.03 -0.27 7.49 -35.30 -0.26 -0.54 16 6 C -0.08 -0.44 10.12 36.01 0.36 -0.07 16 7 C -0.19 -1.97 4.94 -104.43 -0.52 -2.49 16 8 C 0.00 0.02 2.30 -91.77 -0.21 -0.19 16 9 H 0.09 0.96 7.04 -51.93 -0.37 0.60 16 10 C -0.15 -1.60 8.81 37.16 0.33 -1.28 16 11 C -0.11 -1.30 5.06 -27.88 -0.14 -1.44 16 12 C 0.46 7.31 7.70 36.00 0.28 7.58 16 13 O -0.52 -9.17 13.73 -18.75 -0.26 -9.43 16 14 O -0.36 -6.87 10.22 -39.26 -0.40 -7.27 16 15 C 0.08 1.63 5.40 37.16 0.20 1.84 16 16 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 17 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.09 0.67 5.19 -51.93 -0.27 0.40 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.50 7.53 -51.93 -0.39 0.11 16 31 H 0.08 1.05 6.09 -51.93 -0.32 0.74 16 32 H 0.05 0.53 6.10 -51.93 -0.32 0.21 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.06 6.07 -51.93 -0.32 0.75 16 36 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -31.91 334.98 -5.83 -37.74 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.74 Total: -3.73 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.79 Total: -10.17 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 1.14 Total: -29.64 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.47 Total: -15.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.91 -5.83 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178993736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.431 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds